FvH4_1g20162

Plant transposase (Ptta/En/Spm family)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000776
Physical Location & Seq
Forward (+)
12386329 .. 12399282
12954 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g20162.t1

Sequence Viewer

Length: 864 bp
ATGCTGAAACATTTGGCGCCGTCTGTGAGAATCATTACAAAAAGTCACGTTGCTCCACCCGAGAGGCATTCCACCAATGCATGGAGGCAGACCAACCAGCAAGCTAAAAAGGCCAGGGAGCTTGCAAGTGAGAGATTAAGAGCGGCTTGTGCAACCCAGTATGGATCCTGCACAACGGAAGATACGGCAGCGCCGACAGGAGATGTTGTTCGTGAAACGATTCCACCTCCACCACCAGTATCGATTGCCGAAACAGCTCCCCCACTGGATGAGGACGAGATCGACGATGTCACACCAGAAGATGAGGAGGCGAACGTGATCGAAGCAGTGTATGACGAATTCATCAGAGGACCATCTTCATCATCAGTGAGCAGCCTCCTGGTCAATAGCATTGGTGCAATTATTCGATCCAAAGTCAAATTGTCGGCGGGAAACTGGGAATGCCTTGGTGACTTTGAGAAGAAGAAGTTGATAGACGGGCTTACGCCGTATTTTAAAATTGATTTTGGCGATAAATGGATGTGGGCGTGGCTTGAAGATAAGGCGGGTACCATATATAGAGATTGGAATGGGGACTTTTCAAGGCACTATAAGAAGTATGGGAGAGGAACAATCCCGCCAGATTTGATACACAGGCGGGATGAGTGGGACTGGCTTTGCTGGCACTTTGAGTCGGCTGATTTCAAGTCATCTTCTTCTCCCAATGGTTCCTCTCTTGGGTCCGATGGCTCCACTCCCGGTGACCTCACCTCAAGCCCGGCAGCAGCTAGCCTCCCGGTGACATTACGTCAGGCTCGGCAGCAGCTAGCCTCCGGTGACCTTGCCTCAAGACCGGCAGCAGCTAGCCTCCCGTTCTCCGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

288

Amino Acids

31.53

Weight (kDa)

5.25

Isoelectric Point (pI)

51.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 548
AccB1I GGYRCC 2 cut(s) 16, 548
AccB7I CCANNNNNTGG 1 cut(s) 81
AccBSI CCGCTC 1 cut(s) 143
AciI CCGC 5 cut(s) 143, 428, 545, 617, 637
AclWI GGATC 3 cut(s) 159, 172, 402
AcsI RAATTY 1 cut(s) 338
AcyI GRCGYC 1 cut(s) 17
AfaI GTAC 1 cut(s) 550
AfiI CCNNNNNNNGG 2 cut(s) 81, 717
AgsI TTSAA 3 cut(s) 536, 582, 685
AhdI GACNNNNNGTC 1 cut(s) 786
AjnI CCWGG 2 cut(s) 113, 378
AloI GAACNNNNNNTCC 2 cut(s) 192, 224
AluBI AGCT 6 cut(s) 104, 121, 257, 767, 805, 842
AluI AGCT 6 cut(s) 104, 121, 257, 767, 805, 842
AlwI GGATC 3 cut(s) 159, 172, 402
Ama87I CYCGRG 1 cut(s) 59
AoxI GGCC 1 cut(s) 111
ApeKI GCWGC 8 cut(s) 188, 372, 761, 764, 799, 802, 836, 839
ApoI RAATTY 1 cut(s) 338
Asp700I GAANNNNTTC 1 cut(s) 219
Asp718I GGTACC 1 cut(s) 548
AspLEI GCGC 2 cut(s) 19, 193
AspS9I GGNCC 2 cut(s) 350, 720
AsuC2I CCSGG 3 cut(s) 738, 758, 776
AsuHPI GGTGA 5 cut(s) 461, 739, 752, 790, 827
AsuNHI GCTAGC 3 cut(s) 767, 805, 842
AvaI CYCGRG 1 cut(s) 59
AvaII GGWCC 2 cut(s) 350, 720
BamHI GGATCC 1 cut(s) 164
BanI GGYRCC 2 cut(s) 16, 548
BbvI GCAGC 8 cut(s) 200, 384, 773, 776, 811, 814, 848, 851
BccI CCATC 2 cut(s) 361, 719
BceAI ACGGC 3 cut(s) 4, 201, 472
BciT130I CCWGG 2 cut(s) 115, 380
BcnI CCSGG 3 cut(s) 738, 758, 776
BfaI CTAG 4 cut(s) 768, 806, 843, 862
BfoI RGCGCY 2 cut(s) 20, 194
BisI GCNGC 9 cut(s) 144, 189, 373, 762, 765, 800, 803, 837, 840
BlsI GCNGC 9 cut(s) 145, 190, 374, 763, 766, 801, 804, 838, 841
Bme1390I CCNGG 5 cut(s) 115, 380, 738, 758, 776
Bme18I GGWCC 2 cut(s) 350, 720
BmeRI GACNNNNNGTC 1 cut(s) 786
BmeT110I CYCGRG 1 cut(s) 59
BmgT120I GGNCC 2 cut(s) 350, 720
BmiI GGNNCC 6 cut(s) 18, 166, 550, 709, 721, 730
BmrFI CCNGG 5 cut(s) 115, 380, 738, 758, 776
BmrI ACTGGG 2 cut(s) 151, 445
BmtI GCTAGC 3 cut(s) 771, 809, 846
BmuI ACTGGG 2 cut(s) 151, 445
BpuEI CTTGAG 2 cut(s) 736, 811
BpuMI CCSGG 3 cut(s) 738, 758, 776
Bsa29I ATCGAT 1 cut(s) 242
BsaHI GRCGYC 1 cut(s) 17
BsaJI CCNNGG 2 cut(s) 114, 445
BsaWI WCCGGW 1 cut(s) 812
BsaXI ACNNNNNCTCC 2 cut(s) 192, 222
Bsc4I CCNNNNNNNGG 2 cut(s) 81, 717
Bse118I RCCGGY 1 cut(s) 832
Bse1I ACTGG 5 cut(s) 157, 236, 270, 440, 656
BseBI CCWGG 2 cut(s) 115, 380
BseCI ATCGAT 1 cut(s) 242
BseDI CCNNGG 2 cut(s) 114, 445
BseGI GGATG 3 cut(s) 274, 525, 646
BseLI CCNNNNNNNGG 2 cut(s) 81, 717
BseNI ACTGG 5 cut(s) 157, 236, 270, 440, 656
BseRI GAGGAG 1 cut(s) 320
BseXI GCAGC 8 cut(s) 200, 384, 773, 776, 811, 814, 848, 851
BsgI GTGCAG 1 cut(s) 154
BshFI GGCC 1 cut(s) 113
BshNI GGYRCC 2 cut(s) 16, 548
BshVI ATCGAT 1 cut(s) 242
BsiHKCI CYCGRG 1 cut(s) 59
BsiSI CCGG 5 cut(s) 738, 758, 776, 813, 833
BslFI GGGAC 2 cut(s) 587, 662
BslI CCNNNNNNNGG 2 cut(s) 81, 717
BsmFI GGGAC 2 cut(s) 587, 662
BsmI GAATGC 2 cut(s) 67, 446
BsnI GGCC 1 cut(s) 113
BsoBI CYCGRG 1 cut(s) 59
Bsp143I GATC 4 cut(s) 164, 279, 318, 407
BspACI CCGC 5 cut(s) 143, 428, 545, 617, 637
BspANI GGCC 1 cut(s) 113
BspDI ATCGAT 1 cut(s) 242
BspLI GGNNCC 6 cut(s) 18, 166, 550, 709, 721, 730
BspOI GCTAGC 3 cut(s) 771, 809, 846
BspPI GGATC 3 cut(s) 159, 172, 402
BspT107I GGYRCC 2 cut(s) 16, 548
BsrBI CCGCTC 1 cut(s) 143
BsrFI RCCGGY 1 cut(s) 832
BsrI ACTGG 5 cut(s) 157, 236, 270, 440, 656
BssAI RCCGGY 1 cut(s) 832
BssECI CCNNGG 2 cut(s) 114, 445
BssMI GATC 4 cut(s) 164, 279, 318, 407
BssNI GRCGYC 1 cut(s) 17
BssT1I CCWWGG 1 cut(s) 445
Bst2UI CCWGG 2 cut(s) 115, 380
BstACI GRCGYC 1 cut(s) 17
BstC8I GCNNGC 6 cut(s) 102, 123, 662, 769, 807, 844
BstEII GGTNACC 2 cut(s) 740, 815
BstF5I GGATG 3 cut(s) 274, 525, 646
BstH2I RGCGCY 2 cut(s) 20, 194
BstHHI GCGC 2 cut(s) 19, 193
BstKTI GATC 4 cut(s) 167, 282, 321, 410
BstMBI GATC 4 cut(s) 164, 279, 318, 407
BstMWI GCNNNNNNNGC 4 cut(s) 110, 149, 254, 661
BstNI CCWGG 2 cut(s) 115, 380
BstPI GGTNACC 2 cut(s) 740, 815
BstSCI CCNGG 5 cut(s) 113, 378, 736, 756, 774
BstV1I GCAGC 8 cut(s) 200, 384, 773, 776, 811, 814, 848, 851
BstX2I RGATCY 1 cut(s) 164
BstYI RGATCY 1 cut(s) 164
Bsu15I ATCGAT 1 cut(s) 242
BsuRI GGCC 1 cut(s) 113
BsuTUI ATCGAT 1 cut(s) 242
BtsCI GGATG 3 cut(s) 274, 525, 646
BtsI GCAGTG 1 cut(s) 333
BtsIMutI CAGTG 3 cut(s) 263, 333, 372
Cac8I GCNNGC 6 cut(s) 102, 123, 662, 769, 807, 844
CfoI GCGC 2 cut(s) 19, 193
Cfr10I RCCGGY 1 cut(s) 832
Cfr13I GGNCC 2 cut(s) 350, 720
ClaI ATCGAT 1 cut(s) 242
Csp6I GTAC 1 cut(s) 549
CviAII CATG 1 cut(s) 81
CviQI GTAC 1 cut(s) 549
DinI GGCGCC 1 cut(s) 18
DpnI GATC 4 cut(s) 166, 281, 320, 409
DpnII GATC 4 cut(s) 164, 279, 318, 407
DraI TTTAAA 1 cut(s) 496
DriI GACNNNNNGTC 1 cut(s) 786
Eam1105I GACNNNNNGTC 1 cut(s) 786
Eco130I CCWWGG 1 cut(s) 445
Eco47I GGWCC 2 cut(s) 350, 720
Eco88I CYCGRG 1 cut(s) 59
Eco91I GGTNACC 2 cut(s) 740, 815
EcoO65I GGTNACC 2 cut(s) 740, 815
EcoRI GAATTC 1 cut(s) 338
EcoRII CCWGG 2 cut(s) 113, 378
EcoT14I CCWWGG 1 cut(s) 445
EcoT22I ATGCAT 1 cut(s) 82
EgeI GGCGCC 1 cut(s) 18
EheI GGCGCC 1 cut(s) 18
ErhI CCWWGG 1 cut(s) 445
FaeI CATG 1 cut(s) 84
FaiI YATR 8 cut(s) 82, 162, 333, 554, 556, 558, 591, 600
FalI AAGNNNNNCTT 2 cut(s) 130, 162
FaqI GGGAC 2 cut(s) 587, 662
FatI CATG 1 cut(s) 80
FauI CCCGC 4 cut(s) 421, 538, 624, 630
Fnu4HI GCNGC 9 cut(s) 144, 189, 373, 762, 765, 800, 803, 837, 840
FokI GGATG 3 cut(s) 281, 532, 653
Fsp4HI GCNGC 9 cut(s) 144, 189, 373, 762, 765, 800, 803, 837, 840
FspBI CTAG 4 cut(s) 768, 806, 843, 862
GlaI GCGC 2 cut(s) 18, 192
GluI GCNGC 9 cut(s) 144, 189, 373, 762, 765, 800, 803, 837, 840
HaeII RGCGCY 2 cut(s) 20, 194
HaeIII GGCC 1 cut(s) 113
HapII CCGG 5 cut(s) 738, 758, 776, 813, 833
HhaI GCGC 2 cut(s) 19, 193
Hin1I GRCGYC 1 cut(s) 17
Hin1II CATG 1 cut(s) 84
Hin6I GCGC 2 cut(s) 17, 191
HinP1I GCGC 2 cut(s) 17, 191
HinfI GANTC 3 cut(s) 30, 220, 671
HpaII CCGG 5 cut(s) 738, 758, 776, 813, 833
HphI GGTGA 5 cut(s) 461, 739, 752, 790, 827
Hpy188I TCNGA 3 cut(s) 347, 724, 859
Hpy188III TCNNGA 2 cut(s) 212, 828
Hpy99I CGWCG 1 cut(s) 287
HpyCH4IV ACGT 3 cut(s) 48, 315, 787
HpyCH4V TGCA 5 cut(s) 80, 125, 152, 171, 398
HpyF10VI GCNNNNNNNGC 4 cut(s) 110, 149, 254, 661
HpySE526I ACGT 3 cut(s) 48, 315, 787
Hsp92I GRCGYC 1 cut(s) 17
Hsp92II CATG 1 cut(s) 84
HspAI GCGC 2 cut(s) 17, 191
KasI GGCGCC 1 cut(s) 16
KpnI GGTACC 1 cut(s) 552
Kzo9I GATC 4 cut(s) 164, 279, 318, 407
LmnI GCTCC 4 cut(s) 58, 118, 262, 734
Lsp1109I GCAGC 8 cut(s) 200, 384, 773, 776, 811, 814, 848, 851
MaeI CTAG 4 cut(s) 768, 806, 843, 862
MaeII ACGT 3 cut(s) 48, 315, 787
MaeIII GTNAC 6 cut(s) 44, 289, 449, 740, 778, 815
MalI GATC 4 cut(s) 166, 281, 320, 409
MbiI CCGCTC 1 cut(s) 143
MboI GATC 4 cut(s) 164, 279, 318, 407
MboII GAAGA 8 cut(s) 191, 311, 348, 472, 475, 548, 684, 687
MflI RGATCY 1 cut(s) 164
MluCI AATT 4 cut(s) 338, 399, 419, 498
Mly113I GGCGCC 1 cut(s) 17
MlyI GAGTC 1 cut(s) 680
Mph1103I ATGCAT 1 cut(s) 82
MroXI GAANNNNTTC 1 cut(s) 219
MseI TTAA 2 cut(s) 137, 495
MspI CCGG 5 cut(s) 738, 758, 776, 813, 833
MspR9I CCNGG 5 cut(s) 115, 380, 738, 758, 776
Mva1269I GAATGC 2 cut(s) 67, 446
MvaI CCWGG 2 cut(s) 115, 380
MwoI GCNNNNNNNGC 4 cut(s) 110, 149, 254, 661
NarI GGCGCC 1 cut(s) 17
NciI CCSGG 3 cut(s) 738, 758, 776
NdeII GATC 4 cut(s) 164, 279, 318, 407
NheI GCTAGC 3 cut(s) 767, 805, 842
NlaIII CATG 1 cut(s) 84
NlaIV GGNNCC 6 cut(s) 18, 166, 550, 709, 721, 730
NmeAIII GCCGAG 1 cut(s) 775
NmuCI GTSAC 6 cut(s) 44, 289, 449, 740, 778, 815
NsiI ATGCAT 1 cut(s) 82
PcsI WCGNNNNNNNCGW 2 cut(s) 191, 282
PctI GAATGC 2 cut(s) 67, 446
PdmI GAANNNNTTC 1 cut(s) 219
PfeI GAWTC 2 cut(s) 30, 220
PflFI GACNNNGTC 1 cut(s) 287
PflMI CCANNNNNTGG 1 cut(s) 81
PkrI GCNGC 9 cut(s) 145, 190, 374, 763, 766, 801, 804, 838, 841
PleI GAGTC 1 cut(s) 679
PluTI GGCGCC 1 cut(s) 20
PpsI GAGTC 1 cut(s) 679
Psp6I CCWGG 2 cut(s) 113, 378
PspEI GGTNACC 2 cut(s) 740, 815
PspGI CCWGG 2 cut(s) 113, 378
PspN4I GGNNCC 6 cut(s) 18, 166, 550, 709, 721, 730
PspPI GGNCC 2 cut(s) 350, 720
PsuI RGATCY 1 cut(s) 164
PsyI GACNNNGTC 1 cut(s) 287
RsaI GTAC 1 cut(s) 550
RsaNI GTAC 1 cut(s) 549
SaqAI TTAA 2 cut(s) 137, 495
SatI GCNGC 9 cut(s) 144, 189, 373, 762, 765, 800, 803, 837, 840
Sau3AI GATC 4 cut(s) 164, 279, 318, 407
Sau96I GGNCC 2 cut(s) 350, 720
SchI GAGTC 1 cut(s) 680
ScrFI CCNGG 5 cut(s) 115, 380, 738, 758, 776
SfoI GGCGCC 1 cut(s) 18
SinI GGWCC 2 cut(s) 350, 720
SmlI CTYRAG 2 cut(s) 751, 826
SmoI CTYRAG 2 cut(s) 751, 826
Sse9I AATT 4 cut(s) 338, 399, 419, 498
SsiI CCGC 5 cut(s) 143, 428, 545, 617, 637
SspDI GGCGCC 1 cut(s) 16
SspMI CTAG 4 cut(s) 768, 806, 843, 862
StyD4I CCNGG 5 cut(s) 113, 378, 736, 756, 774
StyI CCWWGG 1 cut(s) 445
TaiI ACGT 3 cut(s) 51, 318, 790
TaqI TCGA 4 cut(s) 242, 282, 321, 406
TasI AATT 4 cut(s) 338, 399, 419, 498
TauI GCSGC 1 cut(s) 146
TfiI GAWTC 2 cut(s) 30, 220
Tru1I TTAA 2 cut(s) 137, 495
Tru9I TTAA 2 cut(s) 137, 495
TscAI CASTG 3 cut(s) 270, 333, 372
TseFI GTSAC 6 cut(s) 44, 289, 449, 740, 778, 815
TseI GCWGC 8 cut(s) 188, 372, 761, 764, 799, 802, 836, 839
Tsp45I GTSAC 6 cut(s) 44, 289, 449, 740, 778, 815
TspDTI ATGAA 2 cut(s) 331, 348
TspGWI ACGGA 1 cut(s) 191
TspRI CASTG 3 cut(s) 270, 333, 372
Tth111I GACNNNGTC 1 cut(s) 287
Van91I CCANNNNNTGG 1 cut(s) 81
VpaK11BI GGWCC 2 cut(s) 350, 720
XapI RAATTY 1 cut(s) 338
XmnI GAANNNNTTC 1 cut(s) 219
XspI CTAG 4 cut(s) 768, 806, 843, 862
Zsp2I ATGCAT 1 cut(s) 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.