Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0000776

Physical Location & Seq

Genomic Coordinates Reverse (-)

21571079 .. 21573713

Gene Structure 2635 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g29090.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGACGGAGGATGTGAAAGTCATTGGTTTATTGTATGGAATACTATCTTTTACTAGTAGACGATCGGTTGCCAACTCCAACAACCGTGGTAAAAAGGAGTTGGAGCACCACTCAGGGAGGAAACCTATCATTTACCGGGTGGCCGAGCTAAAGGATAAGGGTGCTTCATTACCGGTGGTTGACGTGTACCCGGTGACATACGACATCAACCAGCCTAAAGCTGCTGAGCATTATGAAAAGTTGAAGGAACAAGGTGCTATTGCCAAGACTTTGCAGAGCACTCAACACCCGGACATCCCACCGGATCAGCTACCTCATTTGGACTGGCCAACTCAACTAAGTGTTGTCAAAAACGCTATGGGAAAAACAAAAGGGTCTTACCTTCATGGTATTGGACAAGCAGGCATCCTAGAGAAGAGCACAAGGTCAACATCTTCGTCTTCACGCTCTCGACCGAATAATGAGACCCAAGTAGCGATAGAGGCTGCTAGAAAGGATGCGGCTGAGGCACAAGAGAGGGCCCAAAAAGCCGAGAAGATCGCTGAGCAGTCTGCTGCAGATTATCAAGCTTTGAAGTTACAAATGGAACAAATCATAGCTCGAATAGGGCTACAGCCTATGTGTTCACCCTCGGTCCCAAGCCAACAACCTCGGGATGACGATGATGATAGGGGCCTTGACACTACTCCGATTAGTTTAGGAAATCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transposase_24

Protein Analysis

237

Amino Acids

25.95

Weight (kDa)

7.82

Isoelectric Point (pI)

39.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000776)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15161 FvH4_1g18892 FvH4_1g18893 FvH4_1g20162 FvH4_1g26653 FvH4_1g29050 FvH4_1g29090 FvH4_1g29091 FvH4_2g00890 FvH4_2g00890 FvH4_2g14380 FvH4_2g17540 FvH4_2g19090 FvH4_2g19770 FvH4_2g30343 FvH4_2g30344 FvH4_2g30380 FvH4_2g34010 FvH4_3g18731 FvH4_3g21360 FvH4_3g23880 FvH4_3g26330 FvH4_3g26702 FvH4_3g30710 FvH4_3g30880 FvH4_3g31911 FvH4_3g32572 FvH4_3g38790 FvH4_3g45880 FvH4_4g03280 FvH4_4g08270 FvH4_4g08610 FvH4_4g08911 FvH4_4g10030 FvH4_4g10220 FvH4_4g10221 FvH4_4g10232 FvH4_4g10233 FvH4_4g10364 FvH4_4g14460 FvH4_4g16210 FvH4_4g27150 FvH4_5g06880 FvH4_5g13180 FvH4_5g19450 FvH4_5g20620 FvH4_5g22931 FvH4_5g24202 FvH4_5g24970 FvH4_5g31450 FvH4_5g31660 FvH4_5g32550 FvH4_6g06811 FvH4_6g17172 FvH4_6g17190 FvH4_6g18010 FvH4_6g21800 FvH4_6g21871 FvH4_6g23101 FvH4_6g23360 FvH4_6g24310 FvH4_6g30100 FvH4_6g31520 FvH4_6g31530 FvH4_6g34820 FvH4_6g35510 FvH4_6g40350 FvH4_6g40360 FvH4_7g09590 FvH4_7g16000

Species

Orthologous Gene IDs

fragaria_vesca

FvH4_1g15161 FvH4_1g18892 FvH4_1g18893 FvH4_1g20162 FvH4_1g26653 FvH4_1g29050 FvH4_1g29090 FvH4_1g29091 FvH4_2g00890 FvH4_2g00890 FvH4_2g14380 FvH4_2g17540 FvH4_2g19090 FvH4_2g19770 FvH4_2g30343 FvH4_2g30344 FvH4_2g30380 FvH4_2g34010 FvH4_3g18731 FvH4_3g21360 FvH4_3g23880 FvH4_3g26330 FvH4_3g26702 FvH4_3g30710 FvH4_3g30880 FvH4_3g31911 FvH4_3g32572 FvH4_3g38790 FvH4_3g45880 FvH4_4g03280 FvH4_4g08270 FvH4_4g08610 FvH4_4g08911 FvH4_4g10030 FvH4_4g10220 FvH4_4g10221 FvH4_4g10232 FvH4_4g10233 FvH4_4g10364 FvH4_4g14460 FvH4_4g16210 FvH4_4g27150 FvH4_5g06880 FvH4_5g13180 FvH4_5g19450 FvH4_5g20620 FvH4_5g22931 FvH4_5g24202 FvH4_5g24970 FvH4_5g31450 FvH4_5g31660 FvH4_5g32550 FvH4_6g06811 FvH4_6g17172 FvH4_6g17190 FvH4_6g18010 FvH4_6g21800 FvH4_6g21871 FvH4_6g23101 FvH4_6g23360 FvH4_6g24310 FvH4_6g30100 FvH4_6g31520 FvH4_6g31530 FvH4_6g34820 FvH4_6g35510 FvH4_6g40350 FvH4_6g40360 FvH4_7g09590 FvH4_7g16000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	58
AciI	CCGC	1 cut(s)	500
AclWI	GGATC	1 cut(s)	312
AcoI	YGGCCR	2 cut(s)	141, 326
AfaI	GTAC	1 cut(s)	188
AflIII	ACRYGT	1 cut(s)	183
AgeI	ACCGGT	1 cut(s)	172
AgsI	TTSAA	2 cut(s)	244, 574
AhlI	ACTAGT	1 cut(s)	53
AjiI	CACGTC	1 cut(s)	184
AluBI	AGCT	5 cut(s)	148, 221, 310, 569, 599
AluI	AGCT	5 cut(s)	148, 221, 310, 569, 599
Alw21I	GWGCWC	3 cut(s)	108, 281, 422
Alw26I	GTCTC	1 cut(s)	458
AlwI	GGATC	1 cut(s)	312
Ama87I	CYCGRG	1 cut(s)	651
AoxI	GGCC	4 cut(s)	141, 326, 519, 673
ApaI	GGGCCC	1 cut(s)	523
ApeKI	GCWGC	3 cut(s)	221, 485, 554
AsiGI	ACCGGT	1 cut(s)	172
AspS9I	GGNCC	4 cut(s)	519, 520, 634, 673
AsuC2I	CCSGG	3 cut(s)	137, 191, 290
AsuHPI	GGTGA	2 cut(s)	205, 618
AvaI	CYCGRG	1 cut(s)	651
AvaII	GGWCC	1 cut(s)	634
BaeGI	GKGCMC	1 cut(s)	523
BalI	TGGCCA	1 cut(s)	328
BanII	GRGCYC	1 cut(s)	523
BbsI	GAAGAC	1 cut(s)	432
Bbv12I	GWGCWC	3 cut(s)	108, 281, 422
BbvCI	CCTCAGC	1 cut(s)	504
BbvI	GCAGC	3 cut(s)	208, 472, 541
BcnI	CCSGG	3 cut(s)	137, 191, 290
BcoDI	GTCTC	1 cut(s)	458
BcuI	ACTAGT	1 cut(s)	53
BfaI	CTAG	3 cut(s)	54, 410, 489
BfmI	CTRYAG	2 cut(s)	555, 611
BisI	GCNGC	4 cut(s)	222, 486, 501, 555
BlpI	GCTNAGC	2 cut(s)	225, 543
BlsI	GCNGC	4 cut(s)	223, 487, 502, 556
Bme1390I	CCNGG	3 cut(s)	137, 191, 290
Bme18I	GGWCC	1 cut(s)	634
BmeT110I	CYCGRG	1 cut(s)	651
BmgBI	CACGTC	1 cut(s)	184
BmgT120I	GGNCC	4 cut(s)	519, 520, 634, 673
BmiI	GGNNCC	3 cut(s)	521, 636, 674
BmrFI	CCNGG	3 cut(s)	137, 191, 290
BmsI	GCATC	2 cut(s)	414, 487
BpiI	GAAGAC	1 cut(s)	432
BplI	GAGNNNNNCTC	2 cut(s)	95, 127
Bpu10I	CCTNAGC	1 cut(s)	504
Bpu1102I	GCTNAGC	2 cut(s)	225, 543
BpuMI	CCSGG	3 cut(s)	137, 191, 290
BsaI	GGTCTC	1 cut(s)	458
BsaJI	CCNNGG	3 cut(s)	85, 630, 650
BsaWI	WCCGGW	2 cut(s)	172, 301
Bse118I	RCCGGY	1 cut(s)	172
Bse1I	ACTGG	1 cut(s)	329
BseDI	CCNNGG	3 cut(s)	85, 630, 650
BseGI	GGATG	5 cut(s)	16, 294, 405, 502, 661
BseMII	CTCAG	4 cut(s)	126, 216, 495, 534
BseNI	ACTGG	1 cut(s)	329
BseSI	GKGCMC	1 cut(s)	523
BseXI	GCAGC	3 cut(s)	208, 472, 541
Bsh1285I	CGRYCG	2 cut(s)	65, 455
BshFI	GGCC	4 cut(s)	143, 328, 521, 675
BshTI	ACCGGT	1 cut(s)	172
BsiEI	CGRYCG	2 cut(s)	65, 455
BsiHKAI	GWGCWC	3 cut(s)	108, 281, 422
BsiHKCI	CYCGRG	1 cut(s)	651
BsiSI	CCGG	5 cut(s)	136, 173, 191, 290, 302
BslFI	GGGAC	1 cut(s)	620
BsmAI	GTCTC	1 cut(s)	458
BsmFI	GGGAC	1 cut(s)	620
BsnI	GGCC	4 cut(s)	143, 328, 521, 675
Bso31I	GGTCTC	1 cut(s)	458
BsoBI	CYCGRG	1 cut(s)	651
Bsp120I	GGGCCC	1 cut(s)	519
Bsp1286I	GDGCHC	4 cut(s)	108, 281, 422, 523
Bsp143I	GATC	3 cut(s)	62, 304, 537
Bsp1720I	GCTNAGC	2 cut(s)	225, 543
BspACI	CCGC	1 cut(s)	500
BspANI	GGCC	4 cut(s)	143, 328, 521, 675
BspCNI	CTCAG	4 cut(s)	125, 217, 496, 535
BspLI	GGNNCC	3 cut(s)	521, 636, 674
BspMAI	CTGCAG	1 cut(s)	559
BspPI	GGATC	1 cut(s)	312
BspQI	GCTCTTC	1 cut(s)	410
BspTNI	GGTCTC	1 cut(s)	458
BsrFI	RCCGGY	1 cut(s)	172
BsrI	ACTGG	1 cut(s)	329
BssAI	RCCGGY	1 cut(s)	172
BssECI	CCNNGG	3 cut(s)	85, 630, 650
BssMI	GATC	3 cut(s)	62, 304, 537
Bst4CI	ACNGT	1 cut(s)	86
Bst6I	CTCTTC	1 cut(s)	410
BstC8I	GCNNGC	1 cut(s)	403
BstDEI	CTNAG	5 cut(s)	112, 225, 338, 504, 543
BstDSI	CCRYGG	1 cut(s)	85
BstF5I	GGATG	5 cut(s)	16, 294, 405, 502, 661
BstKTI	GATC	3 cut(s)	65, 307, 540
BstMAI	GTCTC	1 cut(s)	458
BstMBI	GATC	3 cut(s)	62, 304, 537
BstMCI	CGRYCG	2 cut(s)	65, 455
BstMWI	GCNNNNNNNGC	3 cut(s)	482, 506, 527
BstSCI	CCNGG	3 cut(s)	135, 189, 288
BstSFI	CTRYAG	2 cut(s)	555, 611
BstSLI	GKGCMC	1 cut(s)	523
BstV1I	GCAGC	3 cut(s)	208, 472, 541
BstV2I	GAAGAC	1 cut(s)	432
BsuRI	GGCC	4 cut(s)	143, 328, 521, 675
BtgI	CCRYGG	1 cut(s)	85
BtrI	CACGTC	1 cut(s)	184
BtsCI	GGATG	5 cut(s)	16, 294, 405, 502, 661
Cac8I	GCNNGC	1 cut(s)	403
Cfr10I	RCCGGY	1 cut(s)	172
Cfr13I	GGNCC	4 cut(s)	519, 520, 634, 673
Csp6I	GTAC	1 cut(s)	187
CspAI	ACCGGT	1 cut(s)	172
CspCI	CAANNNNNGTGG	2 cut(s)	67, 102
CviAII	CATG	1 cut(s)	386
CviQI	GTAC	1 cut(s)	187
DdeI	CTNAG	5 cut(s)	112, 225, 338, 504, 543
DpnI	GATC	3 cut(s)	64, 306, 539
DpnII	GATC	3 cut(s)	62, 304, 537
EaeI	YGGCCR	2 cut(s)	141, 326
Eam1104I	CTCTTC	1 cut(s)	410
EarI	CTCTTC	1 cut(s)	410
Eco24I	GRGCYC	1 cut(s)	523
Eco31I	GGTCTC	1 cut(s)	458
Eco47I	GGWCC	1 cut(s)	634
Eco88I	CYCGRG	1 cut(s)	651
EcoO109I	RGGNCCY	2 cut(s)	519, 673
EcoT38I	GRGCYC	1 cut(s)	523
FaeI	CATG	1 cut(s)	389
FaiI	YATR	7 cut(s)	36, 199, 234, 359, 387, 596, 620
FaqI	GGGAC	1 cut(s)	620
FatI	CATG	1 cut(s)	385
FblI	GTMKAC	1 cut(s)	58
Fnu4HI	GCNGC	4 cut(s)	222, 486, 501, 555
FokI	GGATG	5 cut(s)	23, 281, 392, 509, 668
FriOI	GRGCYC	1 cut(s)	523
Fsp4HI	GCNGC	4 cut(s)	222, 486, 501, 555
FspBI	CTAG	3 cut(s)	54, 410, 489
GluI	GCNGC	4 cut(s)	222, 486, 501, 555
HaeIII	GGCC	4 cut(s)	143, 328, 521, 675
HapII	CCGG	5 cut(s)	136, 173, 191, 290, 302
Hin1II	CATG	1 cut(s)	389
HincII	GTYRAC	2 cut(s)	181, 429
HindII	GTYRAC	2 cut(s)	181, 429
HindIII	AAGCTT	1 cut(s)	567
HpaII	CCGG	5 cut(s)	136, 173, 191, 290, 302
HphI	GGTGA	2 cut(s)	205, 618
Hpy166II	GTNNAC	5 cut(s)	59, 181, 187, 429, 626
Hpy188I	TCNGA	1 cut(s)	690
Hpy188III	TCNNGA	2 cut(s)	450, 653
Hpy8I	GTNNAC	5 cut(s)	59, 181, 187, 429, 626
HpyAV	CCTTC	2 cut(s)	238, 392
HpyCH4III	ACNGT	1 cut(s)	86
HpyCH4IV	ACGT	1 cut(s)	183
HpyCH4V	TGCA	2 cut(s)	274, 557
HpyF10VI	GCNNNNNNNGC	3 cut(s)	482, 506, 527
HpyF3I	CTNAG	5 cut(s)	112, 225, 338, 504, 543
HpySE526I	ACGT	1 cut(s)	183
Hsp92II	CATG	1 cut(s)	389
Kzo9I	GATC	3 cut(s)	62, 304, 537
LguI	GCTCTTC	1 cut(s)	410
LmnI	GCTCC	1 cut(s)	103
LpnPI	CCDG	9 cut(s)	99, 149, 186, 204, 224, 303, 310, 315, 387
Lsp1109I	GCAGC	3 cut(s)	208, 472, 541
LweI	GCATC	2 cut(s)	414, 487
MaeI	CTAG	3 cut(s)	54, 410, 489
MaeII	ACGT	1 cut(s)	183
MaeIII	GTNAC	2 cut(s)	193, 576
MalI	GATC	3 cut(s)	64, 306, 539
MboI	GATC	3 cut(s)	62, 304, 537
MboII	GAAGA	4 cut(s)	426, 427, 432, 547
MhlI	GDGCHC	4 cut(s)	108, 281, 422, 523
MlsI	TGGCCA	1 cut(s)	328
MluNI	TGGCCA	1 cut(s)	328
MmeI	TCCRAC	2 cut(s)	81, 102
MnlI	CCTC	7 cut(s)	111, 324, 475, 499, 510, 640, 660
Mox20I	TGGCCA	1 cut(s)	328
MscI	TGGCCA	1 cut(s)	328
Msp20I	TGGCCA	1 cut(s)	328
MspI	CCGG	5 cut(s)	136, 173, 191, 290, 302
MspR9I	CCNGG	3 cut(s)	137, 191, 290
MwoI	GCNNNNNNNGC	3 cut(s)	482, 506, 527
NciI	CCSGG	3 cut(s)	137, 191, 290
NdeII	GATC	3 cut(s)	62, 304, 537
NlaIII	CATG	1 cut(s)	389
NlaIV	GGNNCC	3 cut(s)	521, 636, 674
NmeAIII	GCCGAG	2 cut(s)	169, 556
NmuCI	GTSAC	1 cut(s)	193
PciSI	GCTCTTC	1 cut(s)	410
PinAI	ACCGGT	1 cut(s)	172
PkrI	GCNGC	4 cut(s)	223, 487, 502, 556
Ple19I	CGATCG	1 cut(s)	65
PspN4I	GGNNCC	3 cut(s)	521, 636, 674
PspOMI	GGGCCC	1 cut(s)	519
PspPI	GGNCC	4 cut(s)	519, 520, 634, 673
PstI	CTGCAG	1 cut(s)	559
PvuI	CGATCG	1 cut(s)	65
RsaI	GTAC	1 cut(s)	188
RsaNI	GTAC	1 cut(s)	187
SapI	GCTCTTC	1 cut(s)	410
SatI	GCNGC	4 cut(s)	222, 486, 501, 555
Sau3AI	GATC	3 cut(s)	62, 304, 537
Sau96I	GGNCC	4 cut(s)	519, 520, 634, 673
ScrFI	CCNGG	3 cut(s)	137, 191, 290
SduI	GDGCHC	4 cut(s)	108, 281, 422, 523
SfaNI	GCATC	2 cut(s)	414, 487
SfcI	CTRYAG	2 cut(s)	555, 611
SinI	GGWCC	1 cut(s)	634
SpeI	ACTAGT	1 cut(s)	53
SsiI	CCGC	1 cut(s)	500
SspMI	CTAG	3 cut(s)	54, 410, 489
StyD4I	CCNGG	3 cut(s)	135, 189, 288
TaaI	ACNGT	1 cut(s)	86
TaiI	ACGT	1 cut(s)	186
TaqI	TCGA	2 cut(s)	451, 601
TaqII	GACCGA	2 cut(s)	469, 622
TauI	GCSGC	1 cut(s)	503
TseFI	GTSAC	1 cut(s)	193
TseI	GCWGC	3 cut(s)	221, 485, 554
Tsp45I	GTSAC	1 cut(s)	193
TspDTI	ATGAA	3 cut(s)	156, 249, 374
TspGWI	ACGGA	1 cut(s)	20
VpaK11BI	GGWCC	1 cut(s)	634
XmiI	GTMKAC	1 cut(s)	58
XspI	CTAG	3 cut(s)	54, 410, 489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.