FvH4_5g20620

Plant transposase (Ptta/En/Spm family)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000776
Physical Location & Seq
Reverse (-)
12230422 .. 12234475
4054 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g20620.t1

Sequence Viewer

Length: 1146 bp
ATGCCACCATTGACTCAGAAAAGGGCCAGGGAGATTGCGTCGGAGAGATTACGATCAGCTTGTGCAGTCCAATTTGGTTCCGGCACGACGGAGAATACGGCCCGTCCAACAGAGAATAAGGCGGGGCCGACGGGAGAACAGCCTGACCAGTCACCGGGAGATGGTGAAACGACTCCACCTCCACCACCAGCCTCGATTGCCTCTACAGCTCCTCCATTGGATGAGGACGAGCTCGACGATGTGGCCCCAGAAGCTCCACTGGTGTCCGATGGTTGTAGTGTTCGACGGGGTACTCAGAAGTCCACCGGACCTCCCCCAAAACGCCGACGAGGGTTCGGCAACTTGGACAAAGTCAAGCGTATTGTGAAGTGCACCGGCGTGATCGAAATTGTGTATGACGACTTCATCAGAGGACCGTCTTCATCAGCAGTGAACAGCCTCCTGGTCAATAGCATTGGTTGCATAATTCGATCCAAAGTCAAGTTGTCGGCCGGAAACTGGGAATGCCTCGGTGACTTTGAGAAGAAGAAGTTGATAGACGGGCTTATGCCGTATTTTAAAATTGATTTTGGGGATAAACGGATGTGGGCGTGGCTTGAAGATAAGGCGGGTACCATATATCGAGATTGGAAGGGGGACTTCTCAAGGCACTATAAGAAGTATGGGAGAGAAAGAATTCCGCCTGATTTGATACACAGGCAGGATGAGTGGGACTGGCTTTGCTGGCACTTTGAGTCGCCTGATTTCAAGACACGATCGGCGGCTAACAAGACCAACCTTGGTAAGAAGGAGTCGGAGCACCACACGGGGCGGCTACCTATCATCTATAGGGTGGTCCACCACAAAGAGAATGGTGAGGAATTTCCTGTTATCCCAGCTTACACGGAGACGTATGACACAGTCAACGACCCTAAAGCTGCCAAGAATCTTGAGGAAATGCAGAAAGAGGCCACTGAATTGAAAAATGCACAGAAGAATGTAAACCCTGACATCCCGGAGGCTGAGCTCCCACCTTTGGAGTGGTCAGTGAATCTTAAGTTAGTTTTCTTTAGTTGGAGAAGGATAGAGCTAGATGGAGAAGCCTTTAAGGTTTGTGCAGTTGGTTTTGTTCAGTTGGAGAAGGATAGGCTAGCTAAGTTAGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

382

Amino Acids

42.89

Weight (kDa)

6.69

Isoelectric Point (pI)

47.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 611
AccB1I GGYRCC 1 cut(s) 611
AciI CCGC 5 cut(s) 122, 608, 680, 761, 811
AclWI GGATC 1 cut(s) 465
AcoI YGGCCR 1 cut(s) 489
AcsI RAATTY 2 cut(s) 675, 860
AfaI GTAC 2 cut(s) 292, 613
AfiI CCNNNNNNNGG 4 cut(s) 154, 161, 498, 1015
AflII CTTAAG 1 cut(s) 1034
AgsI TTSAA 3 cut(s) 599, 748, 961
AjnI CCWGG 2 cut(s) 26, 441
AleI CACNNNNGTG 1 cut(s) 377
AluBI AGCT 9 cut(s) 59, 209, 232, 254, 878, 917, 1006, 1069, 1133
AluI AGCT 9 cut(s) 59, 209, 232, 254, 878, 917, 1006, 1069, 1133
Alw21I GWGCWC 4 cut(s) 234, 374, 801, 1008
Alw26I GTCTC 1 cut(s) 881
Alw44I GTGCAC 1 cut(s) 370
AlwI GGATC 1 cut(s) 465
AoxI GGCC 6 cut(s) 24, 99, 125, 243, 489, 948
ApaLI GTGCAC 1 cut(s) 370
ApeKI GCWGC 1 cut(s) 917
ApoI RAATTY 2 cut(s) 675, 860
Asp700I GAANNNNTTC 1 cut(s) 675
Asp718I GGTACC 1 cut(s) 611
AspS9I GGNCC 7 cut(s) 24, 100, 125, 244, 308, 413, 835
AsuC2I CCSGG 2 cut(s) 156, 995
AsuHPI GGTGA 4 cut(s) 144, 176, 524, 866
AsuNHI GCTAGC 1 cut(s) 1129
AvaII GGWCC 3 cut(s) 308, 413, 835
BaeGI GKGCMC 1 cut(s) 374
BanI GGYRCC 1 cut(s) 611
BanII GRGCYC 2 cut(s) 234, 1008
BarI GAAGNNNNNNTAC 2 cut(s) 386, 418
BbsI GAAGAC 1 cut(s) 411
Bbv12I GWGCWC 4 cut(s) 234, 374, 801, 1008
BbvI GCAGC 1 cut(s) 904
BccI CCATC 3 cut(s) 155, 263, 1067
BceAI ACGGC 2 cut(s) 114, 535
BciT130I CCWGG 2 cut(s) 28, 443
BcnI CCSGG 2 cut(s) 156, 995
BcoDI GTCTC 1 cut(s) 881
BfaI CTAG 2 cut(s) 1070, 1130
BfmI CTRYAG 2 cut(s) 204, 826
BfrI CTTAAG 1 cut(s) 1034
BisI GCNGC 3 cut(s) 762, 812, 918
BlpI GCTNAGC 1 cut(s) 1002
BlsI GCNGC 3 cut(s) 763, 813, 919
Bme1390I CCNGG 4 cut(s) 28, 156, 443, 995
Bme18I GGWCC 3 cut(s) 308, 413, 835
BmgT120I GGNCC 7 cut(s) 24, 100, 125, 244, 308, 413, 835
BmiI GGNNCC 4 cut(s) 79, 126, 246, 613
BmrFI CCNGG 4 cut(s) 28, 156, 443, 995
BmrI ACTGGG 1 cut(s) 508
BmtI GCTAGC 1 cut(s) 1133
BmuI ACTGGG 1 cut(s) 508
BpiI GAAGAC 1 cut(s) 411
Bpu1102I GCTNAGC 1 cut(s) 1002
BpuEI CTTGAG 2 cut(s) 628, 950
BpuMI CCSGG 2 cut(s) 156, 995
BsaBI GATNNNNATC 1 cut(s) 52
BsaJI CCNNGG 3 cut(s) 27, 508, 778
BsaWI WCCGGW 1 cut(s) 305
BsaXI ACNNNNNCTCC 8 cut(s) 23, 53, 163, 193, 196, 226, 295, 325
Bsc4I CCNNNNNNNGG 4 cut(s) 154, 161, 498, 1015
Bse118I RCCGGY 1 cut(s) 374
Bse1I ACTGG 4 cut(s) 148, 264, 503, 719
Bse8I GATNNNNATC 1 cut(s) 52
BseBI CCWGG 2 cut(s) 28, 443
BseDI CCNNGG 3 cut(s) 27, 508, 778
BseGI GGATG 4 cut(s) 226, 588, 709, 990
BseJI GATNNNNATC 1 cut(s) 52
BseLI CCNNNNNNNGG 4 cut(s) 154, 161, 498, 1015
BseMII CTCAG 3 cut(s) 29, 308, 993
BseNI ACTGG 4 cut(s) 148, 264, 503, 719
BseRI GAGGAG 1 cut(s) 201
BseSI GKGCMC 1 cut(s) 374
BseX3I CGGCCG 1 cut(s) 489
BseXI GCAGC 1 cut(s) 904
BseYI CCCAGC 1 cut(s) 874
BsgI GTGCAG 2 cut(s) 84, 1116
Bsh1285I CGRYCG 2 cut(s) 492, 758
BshFI GGCC 6 cut(s) 26, 101, 127, 245, 491, 950
BshNI GGYRCC 1 cut(s) 611
BsiEI CGRYCG 2 cut(s) 492, 758
BsiHKAI GWGCWC 4 cut(s) 234, 374, 801, 1008
BsiSI CCGG 6 cut(s) 81, 155, 306, 375, 492, 995
BslFI GGGAC 2 cut(s) 650, 725
BslI CCNNNNNNNGG 4 cut(s) 154, 161, 498, 1015
BsmAI GTCTC 1 cut(s) 881
BsmBI CGTCTC 1 cut(s) 881
BsmFI GGGAC 2 cut(s) 650, 725
BsmI GAATGC 1 cut(s) 509
BsnI GGCC 6 cut(s) 26, 101, 127, 245, 491, 950
Bsp1286I GDGCHC 4 cut(s) 234, 374, 801, 1008
Bsp143I GATC 4 cut(s) 53, 381, 470, 755
Bsp1720I GCTNAGC 1 cut(s) 1002
BspACI CCGC 5 cut(s) 122, 608, 680, 761, 811
BspANI GGCC 6 cut(s) 26, 101, 127, 245, 491, 950
BspCNI CTCAG 3 cut(s) 28, 307, 994
BspLI GGNNCC 4 cut(s) 79, 126, 246, 613
BspOI GCTAGC 1 cut(s) 1133
BspPI GGATC 1 cut(s) 465
BspT107I GGYRCC 1 cut(s) 611
BspTI CTTAAG 1 cut(s) 1034
BsrFI RCCGGY 1 cut(s) 374
BsrI ACTGG 4 cut(s) 148, 264, 503, 719
BssAI RCCGGY 1 cut(s) 374
BssECI CCNNGG 3 cut(s) 27, 508, 778
BssMI GATC 4 cut(s) 53, 381, 470, 755
BssT1I CCWWGG 1 cut(s) 778
Bst2UI CCWGG 2 cut(s) 28, 443
Bst4CI ACNGT 2 cut(s) 417, 901
BstAFI CTTAAG 1 cut(s) 1034
BstAPI GCANNNNNTGC 1 cut(s) 459
BstC8I GCNNGC 2 cut(s) 725, 1131
BstDEI CTNAG 4 cut(s) 15, 294, 1002, 1134
BstF5I GGATG 4 cut(s) 226, 588, 709, 990
BstKTI GATC 4 cut(s) 56, 384, 473, 758
BstMAI GTCTC 1 cut(s) 881
BstMBI GATC 4 cut(s) 53, 381, 470, 755
BstMCI CGRYCG 2 cut(s) 492, 758
BstMWI GCNNNNNNNGC 5 cut(s) 197, 206, 251, 459, 724
BstNI CCWGG 2 cut(s) 28, 443
BstSCI CCNGG 4 cut(s) 26, 154, 441, 993
BstSFI CTRYAG 2 cut(s) 204, 826
BstSLI GKGCMC 1 cut(s) 374
BstV1I GCAGC 1 cut(s) 904
BstV2I GAAGAC 1 cut(s) 411
BstZI CGGCCG 1 cut(s) 489
BsuRI GGCC 6 cut(s) 26, 101, 127, 245, 491, 950
BtsCI GGATG 4 cut(s) 226, 588, 709, 990
BtsI GCAGTG 1 cut(s) 435
BtsIMutI CAGTG 4 cut(s) 257, 435, 951, 1032
Cac8I GCNNGC 2 cut(s) 725, 1131
Cfr10I RCCGGY 1 cut(s) 374
Cfr13I GGNCC 7 cut(s) 24, 100, 125, 244, 308, 413, 835
CseI GACGC 1 cut(s) 27
Csp6I GTAC 2 cut(s) 291, 612
CviQI GTAC 2 cut(s) 291, 612
DdeI CTNAG 4 cut(s) 15, 294, 1002, 1134
DpnI GATC 4 cut(s) 55, 383, 472, 757
DpnII GATC 4 cut(s) 53, 381, 470, 755
DraI TTTAAA 1 cut(s) 559
EaeI YGGCCR 1 cut(s) 489
EagI CGGCCG 1 cut(s) 489
EciI GGCGGA 1 cut(s) 669
Ecl136II GAGCTC 2 cut(s) 232, 1006
EclXI CGGCCG 1 cut(s) 489
Eco130I CCWWGG 1 cut(s) 778
Eco24I GRGCYC 2 cut(s) 234, 1008
Eco47I GGWCC 3 cut(s) 308, 413, 835
Eco52I CGGCCG 1 cut(s) 489
Eco53kI GAGCTC 2 cut(s) 232, 1006
EcoICRI GAGCTC 2 cut(s) 232, 1006
EcoRI GAATTC 1 cut(s) 675
EcoRII CCWGG 2 cut(s) 26, 441
EcoT14I CCWWGG 1 cut(s) 778
EcoT38I GRGCYC 2 cut(s) 234, 1008
ErhI CCWWGG 1 cut(s) 778
Esp3I CGTCTC 1 cut(s) 881
FaiI YATR 9 cut(s) 396, 464, 548, 617, 619, 654, 663, 828, 894
FalI AAGNNNNNCTT 2 cut(s) 623, 655
FaqI GGGAC 2 cut(s) 650, 725
FauI CCCGC 2 cut(s) 115, 601
Fnu4HI GCNGC 3 cut(s) 762, 812, 918
FokI GGATG 4 cut(s) 233, 595, 716, 977
FriOI GRGCYC 2 cut(s) 234, 1008
Fsp4HI GCNGC 3 cut(s) 762, 812, 918
FspBI CTAG 2 cut(s) 1070, 1130
GluI GCNGC 3 cut(s) 762, 812, 918
GsaI CCCAGC 1 cut(s) 878
HaeIII GGCC 6 cut(s) 26, 101, 127, 245, 491, 950
HapII CCGG 6 cut(s) 81, 155, 306, 375, 492, 995
HgaI GACGC 1 cut(s) 27
HincII GTYRAC 1 cut(s) 904
HindII GTYRAC 1 cut(s) 904
HinfI GANTC 6 cut(s) 13, 172, 734, 791, 925, 1030
HpaII CCGG 6 cut(s) 81, 155, 306, 375, 492, 995
HphI GGTGA 4 cut(s) 144, 176, 524, 866
Hpy166II GTNNAC 6 cut(s) 303, 372, 433, 838, 904, 982
Hpy188I TCNGA 6 cut(s) 18, 43, 268, 297, 410, 796
Hpy188III TCNNGA 3 cut(s) 623, 748, 929
Hpy8I GTNNAC 6 cut(s) 303, 372, 433, 838, 904, 982
Hpy99I CGWCG 6 cut(s) 43, 91, 133, 239, 288, 330
HpyAV CCTTC 4 cut(s) 625, 781, 1053, 1114
HpyCH4III ACNGT 2 cut(s) 417, 901
HpyCH4IV ACGT 1 cut(s) 890
HpyCH4V TGCA 6 cut(s) 65, 372, 462, 940, 968, 1097
HpyF10VI GCNNNNNNNGC 5 cut(s) 197, 206, 251, 459, 724
HpyF3I CTNAG 4 cut(s) 15, 294, 1002, 1134
HpySE526I ACGT 1 cut(s) 890
KpnI GGTACC 1 cut(s) 615
Kzo9I GATC 4 cut(s) 53, 381, 470, 755
LmnI GCTCC 4 cut(s) 214, 259, 796, 1011
Lsp1109I GCAGC 1 cut(s) 904
MaeI CTAG 2 cut(s) 1070, 1130
MaeII ACGT 1 cut(s) 890
MaeIII GTNAC 2 cut(s) 150, 512
MalI GATC 4 cut(s) 55, 383, 472, 757
MboI GATC 4 cut(s) 53, 381, 470, 755
MboII GAAGA 5 cut(s) 411, 535, 538, 611, 985
MhlI GDGCHC 4 cut(s) 234, 374, 801, 1008
MluCI AATT 7 cut(s) 71, 387, 465, 561, 675, 860, 956
MlyI GAGTC 4 cut(s) 7, 166, 743, 800
MmeI TCCRAC 5 cut(s) 21, 131, 774, 1034, 1095
MroXI GAANNNNTTC 1 cut(s) 675
MseI TTAA 3 cut(s) 558, 1035, 1086
MslI CAYNNNNRTG 1 cut(s) 377
MspCI CTTAAG 1 cut(s) 1034
MspI CCGG 6 cut(s) 81, 155, 306, 375, 492, 995
MspR9I CCNGG 4 cut(s) 28, 156, 443, 995
Mva1269I GAATGC 1 cut(s) 509
MvaI CCWGG 2 cut(s) 28, 443
MwoI GCNNNNNNNGC 5 cut(s) 197, 206, 251, 459, 724
NciI CCSGG 2 cut(s) 156, 995
NdeII GATC 4 cut(s) 53, 381, 470, 755
NheI GCTAGC 1 cut(s) 1129
NlaIV GGNNCC 4 cut(s) 79, 126, 246, 613
NmuCI GTSAC 2 cut(s) 150, 512
OliI CACNNNNGTG 1 cut(s) 377
PcsI WCGNNNNNNNCGW 1 cut(s) 234
PctI GAATGC 1 cut(s) 509
PdmI GAANNNNTTC 1 cut(s) 675
PfeI GAWTC 2 cut(s) 925, 1030
PflFI GACNNNGTC 2 cut(s) 350, 899
PfoI TCCNGGA 1 cut(s) 993
PkrI GCNGC 3 cut(s) 763, 813, 919
Ple19I CGATCG 1 cut(s) 758
PleI GAGTC 4 cut(s) 7, 166, 742, 799
PpsI GAGTC 4 cut(s) 7, 166, 742, 799
Psp124BI GAGCTC 2 cut(s) 234, 1008
Psp6I CCWGG 2 cut(s) 26, 441
PspFI CCCAGC 1 cut(s) 874
PspGI CCWGG 2 cut(s) 26, 441
PspN4I GGNNCC 4 cut(s) 79, 126, 246, 613
PspPI GGNCC 7 cut(s) 24, 100, 125, 244, 308, 413, 835
PsyI GACNNNGTC 2 cut(s) 350, 899
PvuI CGATCG 1 cut(s) 758
RsaI GTAC 2 cut(s) 292, 613
RsaNI GTAC 2 cut(s) 291, 612
RseI CAYNNNNRTG 1 cut(s) 377
SacI GAGCTC 2 cut(s) 234, 1008
SaqAI TTAA 3 cut(s) 558, 1035, 1086
SatI GCNGC 3 cut(s) 762, 812, 918
Sau3AI GATC 4 cut(s) 53, 381, 470, 755
Sau96I GGNCC 7 cut(s) 24, 100, 125, 244, 308, 413, 835
SchI GAGTC 4 cut(s) 7, 166, 743, 800
ScrFI CCNGG 4 cut(s) 28, 156, 443, 995
SduI GDGCHC 4 cut(s) 234, 374, 801, 1008
SfcI CTRYAG 2 cut(s) 204, 826
SgrAI CRCCGGYG 1 cut(s) 374
SinI GGWCC 3 cut(s) 308, 413, 835
SmiMI CAYNNNNRTG 1 cut(s) 377
SmlI CTYRAG 3 cut(s) 643, 929, 1034
SmoI CTYRAG 3 cut(s) 643, 929, 1034
Sse9I AATT 7 cut(s) 71, 387, 465, 561, 675, 860, 956
SsiI CCGC 5 cut(s) 122, 608, 680, 761, 811
SspMI CTAG 2 cut(s) 1070, 1130
SstI GAGCTC 2 cut(s) 234, 1008
StyD4I CCNGG 4 cut(s) 26, 154, 441, 993
StyI CCWWGG 1 cut(s) 778
TaaI ACNGT 2 cut(s) 417, 901
TaiI ACGT 1 cut(s) 893
TaqI TCGA 6 cut(s) 194, 234, 283, 384, 469, 622
TasI AATT 7 cut(s) 71, 387, 465, 561, 675, 860, 956
TauI GCSGC 2 cut(s) 764, 814
TfiI GAWTC 2 cut(s) 925, 1030
Tru1I TTAA 3 cut(s) 558, 1035, 1086
Tru9I TTAA 3 cut(s) 558, 1035, 1086
TscAI CASTG 4 cut(s) 264, 435, 958, 1032
TseFI GTSAC 2 cut(s) 150, 512
TseI GCWGC 1 cut(s) 917
Tsp45I GTSAC 2 cut(s) 150, 512
TspDTI ATGAA 2 cut(s) 394, 411
TspGWI ACGGA 3 cut(s) 104, 595, 899
TspRI CASTG 4 cut(s) 264, 435, 958, 1032
Tth111I GACNNNGTC 2 cut(s) 350, 899
Vha464I CTTAAG 1 cut(s) 1034
VneI GTGCAC 1 cut(s) 370
VpaK11BI GGWCC 3 cut(s) 308, 413, 835
XapI RAATTY 2 cut(s) 675, 860
XcmI CCANNNNNNNNNTGG 2 cut(s) 848, 1017
XmnI GAANNNNTTC 1 cut(s) 675
XspI CTAG 2 cut(s) 1070, 1130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.