Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0000776

Physical Location & Seq

Genomic Coordinates Forward (+)

14346471 .. 14349154

Gene Structure 2684 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g21360.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGCTGCCGACTAGTGGGAAGAGGAAGAGACAGGCGGAACAGTCTCAGCGACTGATGCAGGAGGTAGCCCAGCAATATCGACGCCCCACAGAGGTCCCCTCGCGGCCTATGGCGCCTCCGTCAAGTTCGGCTCCTCCTCTCCCTCCACCACTGCCCGATGTTGACGAACCTTCCCCAGATGATCATTGGACTGGCCAGTCATCTGCCAAGATCAGTGTTCGGCGCAAACCGCATCCTGAAGGAGCACCTCCCCCTAAAACCAAGACAAGGGTGGTAAAAGGCTTAAAAGCAGAGGAGATAGTCAAGAGGACTGGACAAAAGATTAAAGTAACTTGGGACGATTTCTGCCACGGTCCGAAGAGTAAAAAGTTAAGCAGCATGTTGACACACGATGTCGGCCACATTATATGGGATGAAATTTCCATGGTGGCTCTAACTTGGGGTGACACTACCGATGATGAGCAAAAGAAGCTGCCCACTAAACTCTTTATCTTTTATGAGTTTGATGTTGATGATAAGCTCATGTGGAAGTGGTTGGACGACAAGGCTAAAAATTGTGCTGAGCTGAATCTTGAACCAATTGAAGAAAATGAAGAAGAGCATAATTGGAATTTGACCAGTTGGAAGATGAGGCAACATGAGTCATGTGATGATTCTCAGCCTTCAATTGCAATTGGGCAATTTAATGGGGATCATGACCTAGCTCGTACTGTGCTTGAGTTTCAGATCAATGACCAACGCATTGAGGATGCAGAAGAGATGGAGCATGAGGCTGACAGTGCACAACACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Voldacs

Protein Analysis

264

Amino Acids

30.18

Weight (kDa)

5.34

Isoelectric Point (pI)

58.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000776)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15161 FvH4_1g18892 FvH4_1g18893 FvH4_1g20162 FvH4_1g26653 FvH4_1g29050 FvH4_1g29090 FvH4_1g29091 FvH4_2g00890 FvH4_2g00890 FvH4_2g14380 FvH4_2g17540 FvH4_2g19090 FvH4_2g19770 FvH4_2g30343 FvH4_2g30344 FvH4_2g30380 FvH4_2g34010 FvH4_3g18731 FvH4_3g21360 FvH4_3g23880 FvH4_3g26330 FvH4_3g26702 FvH4_3g30710 FvH4_3g30880 FvH4_3g31911 FvH4_3g32572 FvH4_3g38790 FvH4_3g45880 FvH4_4g03280 FvH4_4g08270 FvH4_4g08610 FvH4_4g08911 FvH4_4g10030 FvH4_4g10220 FvH4_4g10221 FvH4_4g10232 FvH4_4g10233 FvH4_4g10364 FvH4_4g14460 FvH4_4g16210 FvH4_4g27150 FvH4_5g06880 FvH4_5g13180 FvH4_5g19450 FvH4_5g20620 FvH4_5g22931 FvH4_5g24202 FvH4_5g24970 FvH4_5g31450 FvH4_5g31660 FvH4_5g32550 FvH4_6g06811 FvH4_6g17172 FvH4_6g17190 FvH4_6g18010 FvH4_6g21800 FvH4_6g21871 FvH4_6g23101 FvH4_6g23360 FvH4_6g24310 FvH4_6g30100 FvH4_6g31520 FvH4_6g31530 FvH4_6g34820 FvH4_6g35510 FvH4_6g40350 FvH4_6g40360 FvH4_7g09590 FvH4_7g16000

Species

Orthologous Gene IDs

fragaria_vesca

FvH4_1g15161 FvH4_1g18892 FvH4_1g18893 FvH4_1g20162 FvH4_1g26653 FvH4_1g29050 FvH4_1g29090 FvH4_1g29091 FvH4_2g00890 FvH4_2g00890 FvH4_2g14380 FvH4_2g17540 FvH4_2g19090 FvH4_2g19770 FvH4_2g30343 FvH4_2g30344 FvH4_2g30380 FvH4_2g34010 FvH4_3g18731 FvH4_3g21360 FvH4_3g23880 FvH4_3g26330 FvH4_3g26702 FvH4_3g30710 FvH4_3g30880 FvH4_3g31911 FvH4_3g32572 FvH4_3g38790 FvH4_3g45880 FvH4_4g03280 FvH4_4g08270 FvH4_4g08610 FvH4_4g08911 FvH4_4g10030 FvH4_4g10220 FvH4_4g10221 FvH4_4g10232 FvH4_4g10233 FvH4_4g10364 FvH4_4g14460 FvH4_4g16210 FvH4_4g27150 FvH4_5g06880 FvH4_5g13180 FvH4_5g19450 FvH4_5g20620 FvH4_5g22931 FvH4_5g24202 FvH4_5g24970 FvH4_5g31450 FvH4_5g31660 FvH4_5g32550 FvH4_6g06811 FvH4_6g17172 FvH4_6g17190 FvH4_6g18010 FvH4_6g21800 FvH4_6g21871 FvH4_6g23101 FvH4_6g23360 FvH4_6g24310 FvH4_6g30100 FvH4_6g31520 FvH4_6g31530 FvH4_6g34820 FvH4_6g35510 FvH4_6g40350 FvH4_6g40360 FvH4_7g09590 FvH4_7g16000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	196
AccB1I	GGYRCC	1 cut(s)	112
AccII	CGCG	1 cut(s)	103
AciI	CCGC	3 cut(s)	35, 103, 230
AclWI	GGATC	1 cut(s)	699
AcoI	YGGCCR	2 cut(s)	193, 397
AcsI	RAATTY	2 cut(s)	417, 610
AcuI	CTGAAG	1 cut(s)	258
AcyI	GRCGYC	2 cut(s)	82, 113
AfaI	GTAC	1 cut(s)	709
AfiI	CCNNNNNNNGG	3 cut(s)	14, 91, 267
AgsI	TTSAA	3 cut(s)	575, 584, 666
AhlI	ACTAGT	1 cut(s)	11
AluBI	AGCT	4 cut(s)	472, 520, 565, 704
AluI	AGCT	4 cut(s)	472, 520, 565, 704
Alw21I	GWGCWC	2 cut(s)	247, 784
Alw26I	GTCTC	2 cut(s)	22, 48
Alw44I	GTGCAC	1 cut(s)	780
AlwI	GGATC	1 cut(s)	699
AlwNI	CAGNNNCTG	1 cut(s)	52
AoxI	GGCC	3 cut(s)	104, 193, 397
ApaLI	GTGCAC	1 cut(s)	780
ApeKI	GCWGC	3 cut(s)	4, 375, 472
ApoI	RAATTY	2 cut(s)	417, 610
AspLEI	GCGC	2 cut(s)	115, 225
AspS9I	GGNCC	2 cut(s)	94, 353
AsuHPI	GGTGA	1 cut(s)	455
AvaII	GGWCC	2 cut(s)	94, 353
BaeGI	GKGCMC	1 cut(s)	784
BalI	TGGCCA	1 cut(s)	195
BanI	GGYRCC	1 cut(s)	112
Bbv12I	GWGCWC	2 cut(s)	247, 784
BbvI	GCAGC	2 cut(s)	387, 459
BccI	CCATC	1 cut(s)	754
BclI	TGATCA	1 cut(s)	181
BcoDI	GTCTC	2 cut(s)	22, 48
BcuI	ACTAGT	1 cut(s)	11
BfaI	CTAG	2 cut(s)	12, 701
BfoI	RGCGCY	1 cut(s)	116
BisI	GCNGC	4 cut(s)	5, 104, 376, 473
BlpI	GCTNAGC	1 cut(s)	561
BlsI	GCNGC	4 cut(s)	6, 105, 377, 474
Bme18I	GGWCC	2 cut(s)	94, 353
BmgT120I	GGNCC	2 cut(s)	94, 353
BmiI	GGNNCC	3 cut(s)	96, 114, 132
BmsI	GCATC	3 cut(s)	45, 241, 739
BplI	GAGNNNNNCTC	2 cut(s)	83, 115
Bpu1102I	GCTNAGC	1 cut(s)	561
BpuEI	CTTGAG	1 cut(s)	737
BsaHI	GRCGYC	2 cut(s)	82, 113
BsaJI	CCNNGG	2 cut(s)	349, 423
Bsc4I	CCNNNNNNNGG	3 cut(s)	14, 91, 267
Bse1I	ACTGG	4 cut(s)	196, 196, 316, 618
BseDI	CCNNGG	2 cut(s)	349, 423
BseGI	GGATG	3 cut(s)	232, 418, 754
BseLI	CCNNNNNNNGG	3 cut(s)	14, 91, 267
BseMII	CTCAG	3 cut(s)	59, 552, 671
BseNI	ACTGG	4 cut(s)	196, 196, 316, 618
BseRI	GAGGAG	3 cut(s)	123, 126, 308
BseSI	GKGCMC	1 cut(s)	784
BseXI	GCAGC	2 cut(s)	387, 459
BseYI	CCCAGC	1 cut(s)	69
Bsh1236I	CGCG	1 cut(s)	103
BshFI	GGCC	3 cut(s)	106, 195, 399
BshNI	GGYRCC	1 cut(s)	112
BsiHKAI	GWGCWC	2 cut(s)	247, 784
BslFI	GGGAC	2 cut(s)	80, 350
BslI	CCNNNNNNNGG	3 cut(s)	14, 91, 267
BsmAI	GTCTC	2 cut(s)	22, 48
BsmFI	GGGAC	2 cut(s)	80, 350
BsnI	GGCC	3 cut(s)	106, 195, 399
Bsp1286I	GDGCHC	2 cut(s)	247, 784
Bsp143I	GATC	4 cut(s)	181, 210, 691, 726
Bsp1720I	GCTNAGC	1 cut(s)	561
Bsp19I	CCATGG	1 cut(s)	423
BspACI	CCGC	3 cut(s)	35, 103, 230
BspANI	GGCC	3 cut(s)	106, 195, 399
BspCNI	CTCAG	3 cut(s)	58, 553, 670
BspFNI	CGCG	1 cut(s)	103
BspHI	TCATGA	1 cut(s)	694
BspLI	GGNNCC	3 cut(s)	96, 114, 132
BspPI	GGATC	1 cut(s)	699
BspQI	GCTCTTC	1 cut(s)	591
BspT107I	GGYRCC	1 cut(s)	112
BsrI	ACTGG	4 cut(s)	196, 196, 316, 618
BssECI	CCNNGG	2 cut(s)	349, 423
BssMI	GATC	4 cut(s)	181, 210, 691, 726
BssNI	GRCGYC	2 cut(s)	82, 113
BssT1I	CCWWGG	1 cut(s)	423
Bst4CI	ACNGT	4 cut(s)	42, 353, 712, 779
Bst6I	CTCTTC	5 cut(s)	14, 20, 353, 591, 750
BstACI	GRCGYC	2 cut(s)	82, 113
BstDEI	CTNAG	3 cut(s)	45, 561, 657
BstDSI	CCRYGG	2 cut(s)	349, 423
BstF5I	GGATG	3 cut(s)	232, 418, 754
BstFNI	CGCG	1 cut(s)	103
BstH2I	RGCGCY	1 cut(s)	116
BstHHI	GCGC	2 cut(s)	115, 225
BstKTI	GATC	4 cut(s)	184, 213, 694, 729
BstMAI	GTCTC	2 cut(s)	22, 48
BstMBI	GATC	4 cut(s)	181, 210, 691, 726
BstMWI	GCNNNNNNNGC	5 cut(s)	55, 112, 229, 469, 779
BstNSI	RCATGY	1 cut(s)	382
BstSLI	GKGCMC	1 cut(s)	784
BstUI	CGCG	1 cut(s)	103
BstV1I	GCAGC	2 cut(s)	387, 459
BsuRI	GGCC	3 cut(s)	106, 195, 399
BtgI	CCRYGG	2 cut(s)	349, 423
BtsCI	GGATG	3 cut(s)	232, 418, 754
BtsI	GCAGTG	1 cut(s)	149
BtsIMutI	CAGTG	4 cut(s)	149, 220, 784, 787
CaiI	CAGNNNCTG	1 cut(s)	52
CciI	TCATGA	1 cut(s)	694
CfoI	GCGC	2 cut(s)	115, 225
Cfr13I	GGNCC	2 cut(s)	94, 353
CpoI	CGGWCCG	1 cut(s)	353
CseI	GACGC	1 cut(s)	90
Csp6I	GTAC	1 cut(s)	708
CspI	CGGWCCG	1 cut(s)	353
CviAII	CATG	7 cut(s)	379, 424, 523, 638, 645, 695, 767
CviQI	GTAC	1 cut(s)	708
DdeI	CTNAG	3 cut(s)	45, 561, 657
DinI	GGCGCC	1 cut(s)	114
DpnI	GATC	4 cut(s)	183, 212, 693, 728
DpnII	GATC	4 cut(s)	181, 210, 691, 726
DrdI	GACNNNNNNGTC	1 cut(s)	196
DseDI	GACNNNNNNGTC	1 cut(s)	196
EaeI	YGGCCR	2 cut(s)	193, 397
Eam1104I	CTCTTC	5 cut(s)	14, 20, 353, 591, 750
EarI	CTCTTC	5 cut(s)	14, 20, 353, 591, 750
EciI	GGCGGA	1 cut(s)	50
Eco130I	CCWWGG	1 cut(s)	423
Eco47I	GGWCC	2 cut(s)	94, 353
Eco57I	CTGAAG	1 cut(s)	258
EcoO109I	RGGNCCY	1 cut(s)	94
EcoT14I	CCWWGG	1 cut(s)	423
EgeI	GGCGCC	1 cut(s)	114
EheI	GGCGCC	1 cut(s)	114
ErhI	CCWWGG	1 cut(s)	423
FaeI	CATG	7 cut(s)	382, 427, 526, 641, 648, 698, 770
FaqI	GGGAC	2 cut(s)	80, 350
FatI	CATG	7 cut(s)	378, 423, 522, 637, 644, 694, 766
FbaI	TGATCA	1 cut(s)	181
Fnu4HI	GCNGC	4 cut(s)	5, 104, 376, 473
FokI	GGATG	3 cut(s)	219, 425, 761
Fsp4HI	GCNGC	4 cut(s)	5, 104, 376, 473
FspBI	CTAG	2 cut(s)	12, 701
GlaI	GCGC	2 cut(s)	114, 224
GluI	GCNGC	4 cut(s)	5, 104, 376, 473
GsaI	CCCAGC	1 cut(s)	73
HaeII	RGCGCY	1 cut(s)	116
HaeIII	GGCC	3 cut(s)	106, 195, 399
HgaI	GACGC	1 cut(s)	90
HhaI	GCGC	2 cut(s)	115, 225
Hin1I	GRCGYC	2 cut(s)	82, 113
Hin1II	CATG	7 cut(s)	382, 427, 526, 641, 648, 698, 770
Hin6I	GCGC	2 cut(s)	113, 223
HinP1I	GCGC	2 cut(s)	113, 223
HincII	GTYRAC	2 cut(s)	163, 384
HindII	GTYRAC	2 cut(s)	163, 384
HinfI	GANTC	3 cut(s)	568, 641, 653
HphI	GGTGA	1 cut(s)	455
Hpy166II	GTNNAC	3 cut(s)	163, 384, 782
Hpy188I	TCNGA	2 cut(s)	357, 726
Hpy188III	TCNNGA	4 cut(s)	236, 304, 572, 695
Hpy8I	GTNNAC	3 cut(s)	163, 384, 782
Hpy99I	CGWCG	1 cut(s)	84
HpyAV	CCTTC	3 cut(s)	180, 233, 672
HpyCH4III	ACNGT	4 cut(s)	42, 353, 712, 779
HpyCH4V	TGCA	4 cut(s)	58, 671, 752, 782
HpyF10VI	GCNNNNNNNGC	5 cut(s)	55, 112, 229, 469, 779
HpyF3I	CTNAG	3 cut(s)	45, 561, 657
Hsp92I	GRCGYC	2 cut(s)	82, 113
Hsp92II	CATG	7 cut(s)	382, 427, 526, 641, 648, 698, 770
HspAI	GCGC	2 cut(s)	113, 223
KasI	GGCGCC	1 cut(s)	112
Ksp22I	TGATCA	1 cut(s)	181
Kzo9I	GATC	4 cut(s)	181, 210, 691, 726
LguI	GCTCTTC	1 cut(s)	591
LmnI	GCTCC	3 cut(s)	136, 242, 763
LpnPI	CCDG	9 cut(s)	17, 44, 83, 177, 189, 209, 249, 297, 631
Lsp1109I	GCAGC	2 cut(s)	387, 459
LweI	GCATC	3 cut(s)	45, 241, 739
MaeI	CTAG	2 cut(s)	12, 701
MaeIII	GTNAC	2 cut(s)	328, 443
MalI	GATC	4 cut(s)	183, 212, 693, 728
MboI	GATC	4 cut(s)	181, 210, 691, 726
MboII	GAAGA	8 cut(s)	31, 37, 370, 596, 605, 608, 637, 767
MfeI	CAATTG	3 cut(s)	579, 666, 672
MhlI	GDGCHC	2 cut(s)	247, 784
MlsI	TGGCCA	1 cut(s)	195
MluCI	AATT	8 cut(s)	417, 553, 579, 604, 610, 666, 672, 680
MluNI	TGGCCA	1 cut(s)	195
Mly113I	GGCGCC	1 cut(s)	113
MlyI	GAGTC	1 cut(s)	650
MmeI	TCCRAC	2 cut(s)	516, 602
Mox20I	TGGCCA	1 cut(s)	195
MscI	TGGCCA	1 cut(s)	195
MseI	TTAA	4 cut(s)	284, 324, 371, 684
Msp20I	TGGCCA	1 cut(s)	195
MunI	CAATTG	3 cut(s)	579, 666, 672
MvnI	CGCG	1 cut(s)	103
MwoI	GCNNNNNNNGC	5 cut(s)	55, 112, 229, 469, 779
NarI	GGCGCC	1 cut(s)	113
NcoI	CCATGG	1 cut(s)	423
NdeII	GATC	4 cut(s)	181, 210, 691, 726
NlaIII	CATG	7 cut(s)	382, 427, 526, 641, 648, 698, 770
NlaIV	GGNNCC	3 cut(s)	96, 114, 132
NmuCI	GTSAC	1 cut(s)	443
NspI	RCATGY	1 cut(s)	382
PagI	TCATGA	1 cut(s)	694
PciSI	GCTCTTC	1 cut(s)	591
PfeI	GAWTC	2 cut(s)	568, 653
PkrI	GCNGC	4 cut(s)	6, 105, 377, 474
PleI	GAGTC	1 cut(s)	649
PluTI	GGCGCC	1 cut(s)	116
PpsI	GAGTC	1 cut(s)	649
PpuMI	RGGWCCY	1 cut(s)	94
Psp5II	RGGWCCY	1 cut(s)	94
PspFI	CCCAGC	1 cut(s)	69
PspN4I	GGNNCC	3 cut(s)	96, 114, 132
PspPI	GGNCC	2 cut(s)	94, 353
PspPPI	RGGWCCY	1 cut(s)	94
PstNI	CAGNNNCTG	1 cut(s)	52
RsaI	GTAC	1 cut(s)	709
RsaNI	GTAC	1 cut(s)	708
Rsr2I	CGGWCCG	1 cut(s)	353
RsrII	CGGWCCG	1 cut(s)	353
SapI	GCTCTTC	1 cut(s)	591
SaqAI	TTAA	4 cut(s)	284, 324, 371, 684
SatI	GCNGC	4 cut(s)	5, 104, 376, 473
Sau3AI	GATC	4 cut(s)	181, 210, 691, 726
Sau96I	GGNCC	2 cut(s)	94, 353
SchI	GAGTC	1 cut(s)	650
SduI	GDGCHC	2 cut(s)	247, 784
SetI	ASST	9 cut(s)	66, 96, 172, 250, 474, 522, 567, 702, 706
SfaNI	GCATC	3 cut(s)	45, 241, 739
SfoI	GGCGCC	1 cut(s)	114
SinI	GGWCC	2 cut(s)	94, 353
SmlI	CTYRAG	1 cut(s)	716
SmoI	CTYRAG	1 cut(s)	716
SpeI	ACTAGT	1 cut(s)	11
Sse9I	AATT	8 cut(s)	417, 553, 579, 604, 610, 666, 672, 680
SsiI	CCGC	3 cut(s)	35, 103, 230
SspDI	GGCGCC	1 cut(s)	112
SspMI	CTAG	2 cut(s)	12, 701
StyI	CCWWGG	1 cut(s)	423
TaaI	ACNGT	4 cut(s)	42, 353, 712, 779
TaqI	TCGA	1 cut(s)	79
TasI	AATT	8 cut(s)	417, 553, 579, 604, 610, 666, 672, 680
TauI	GCSGC	1 cut(s)	106
TfiI	GAWTC	2 cut(s)	568, 653
Tru1I	TTAA	4 cut(s)	284, 324, 371, 684
Tru9I	TTAA	4 cut(s)	284, 324, 371, 684
TscAI	CASTG	3 cut(s)	156, 220, 784
TseFI	GTSAC	1 cut(s)	443
TseI	GCWGC	3 cut(s)	4, 375, 472
Tsp45I	GTSAC	1 cut(s)	443
TspDTI	ATGAA	2 cut(s)	429, 606
TspGWI	ACGGA	1 cut(s)	108
TspRI	CASTG	3 cut(s)	156, 220, 784
VneI	GTGCAC	1 cut(s)	780
VpaK11BI	GGWCC	2 cut(s)	94, 353
XapI	RAATTY	2 cut(s)	417, 610
XceI	RCATGY	1 cut(s)	382
XcmI	CCANNNNNNNNNTGG	2 cut(s)	183, 268
XspI	CTAG	2 cut(s)	12, 701

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.