FvH4_7g09590

Plant transposase (Ptta/En/Spm family)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000776
Physical Location & Seq
Forward (+)
9219010 .. 9222459
3450 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g09590.t1

Sequence Viewer

Length: 1164 bp
ATGGCACCATTGTCGAAGAAAAGGTCCAGGGAGATTGCGTCGGAGAGATTACGATCGGCTTGTGCTGCCCAATTTGGTTCCGACACGAAGGCGAATACGGCGGGGCCGACGGGAGATGTTGCTGAGCAGTCACCGACGGGAGATGGTGAAACCACTCCACCTCCACCACCAGCCTCGATTGCCTCTATAGCTCCTCCACCACCAGCCTTGATTGCGTCTACAGCTCCTCCACTGGATGAGGACGACATCGACGATGTCGCCCTAGAAGCTCAGGCGACGCTGTCTGATGGTTGCAGTGTTCGACGTGGTACTCAGAAGTCCACCAGACCTCCCCCAAAACGCCGACGAGGGTTCGGCAACCTGGACAAGGTGAAACGAATTGTGAAAGTTTCCGGCTTGATCGAAGTTGTGTATGACGACTTCATCAGAGGACCGTCTTCATCATCAGTGAACAGCCTCCTAGTCAATAGCATTGGTTGCATAATTCGATCCAAAGTCAGATTGTCGGCCGAAAACTGGGAATGCATCGGTGACTCTGAGAAGAAGAAGTTGATAGACGGGCTTACGACACGATCGGCGGCTAACAAGACCAACCGTGGTAAGAAGGAGTCGGAGCACCACACGGGGCGGCTACCTATCATCTACAGGGTGGTCCACCACAAAGAGAAGGGTAAGGAATTTCCTGTTATCCCAGCTTACACAGAGACGTATGACACAGTCAACGACCCTAAAGCTGCCAAGAATCTTGAGGAAATGCAGAAAGAGGCAACTGAATTGAAAAATGCACAGAAGAATGCAAACCCTGACATCCCGGAGGCTGAGCTCCCACCTTTGGAGTGGTCAATGAATCTTAAGGTGCTTGAAGCAGGAGTCGGCAGAAGAGCCGGGAAAGAGATCTGTGGTCTTGGAAGAGCAGGTGTCCGACAGTTATCATCTTCCACTCCACGTTCTCGAGTTCATGAGGTGGAGGAGAGATTACATATTGCTGAAGAGAGGGCCGAAAAAGCTGAGGCGGTTGCGCAAAAAGTTAGTGAAGAGATGACATTGGTGAAGCAGCAACTAGCAGCAGTGATGTCTTTTATGGCGCAGCAGACTGGGTGTCCTCCACCAGTCCCTTCCCAACAACCTCTAGAAGAAAATGTTGATGCAGTTGAGAGGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

388

Amino Acids

41.97

Weight (kDa)

7.61

Isoelectric Point (pI)

57.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 905
Acc16I TGCGCA 1 cut(s) 1020
Acc36I ACCTGC 1 cut(s) 905
AccB1I GGYRCC 1 cut(s) 4
AccI GTMKAC 1 cut(s) 218
AciI CCGC 4 cut(s) 101, 578, 628, 1013
AclWI GGATC 1 cut(s) 483
AcoI YGGCCR 1 cut(s) 507
AcsI RAATTY 1 cut(s) 677
AcuI CTGAAG 1 cut(s) 1008
AfaI GTAC 1 cut(s) 310
AfiI CCNNNNNNNGG 3 cut(s) 367, 516, 832
AflII CTTAAG 1 cut(s) 851
AgsI TTSAA 2 cut(s) 778, 863
AhdI GACNNNNNGTC 1 cut(s) 1098
AjiI CACGTC 1 cut(s) 305
AjnI CCWGG 2 cut(s) 26, 360
AluBI AGCT 7 cut(s) 191, 224, 269, 695, 734, 823, 1007
AluI AGCT 7 cut(s) 191, 224, 269, 695, 734, 823, 1007
Alw21I GWGCWC 2 cut(s) 618, 825
Alw26I GTCTC 1 cut(s) 698
AlwI GGATC 1 cut(s) 483
Ama87I CYCGRG 1 cut(s) 951
AoxI GGCC 3 cut(s) 104, 507, 996
ApeKI GCWGC 5 cut(s) 65, 734, 1054, 1064, 1087
ApoI RAATTY 1 cut(s) 677
ArsI GACNNNNNNTTYG 2 cut(s) 8, 40
AspLEI GCGC 2 cut(s) 1021, 1087
AspS9I GGNCC 5 cut(s) 24, 104, 431, 652, 996
AsuC2I CCSGG 2 cut(s) 812, 886
AsuHPI GGTGA 5 cut(s) 123, 158, 382, 542, 1060
AvaI CYCGRG 1 cut(s) 951
AvaII GGWCC 3 cut(s) 24, 431, 652
BanI GGYRCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 825
BarI GAAGNNNNNNTAC 2 cut(s) 404, 436
BbsI GAAGAC 1 cut(s) 429
Bbv12I GWGCWC 2 cut(s) 618, 825
BbvCI CCTCAGC 1 cut(s) 1008
BbvI GCAGC 5 cut(s) 52, 721, 1066, 1076, 1099
BccI CCATC 2 cut(s) 137, 281
BceAI ACGGC 1 cut(s) 114
BcgI CGANNNNNNTGC 1 cut(s) 28
BciT130I CCWGG 2 cut(s) 28, 362
BcnI CCSGG 2 cut(s) 812, 886
BcoDI GTCTC 1 cut(s) 698
BfaI CTAG 5 cut(s) 263, 461, 1061, 1130, 1162
BfmI CTRYAG 3 cut(s) 186, 219, 643
BfrI CTTAAG 1 cut(s) 851
BfuAI ACCTGC 1 cut(s) 905
BglII AGATCT 1 cut(s) 894
BisI GCNGC 7 cut(s) 66, 579, 629, 735, 1055, 1065, 1088
BlpI GCTNAGC 2 cut(s) 123, 819
BlsI GCNGC 7 cut(s) 67, 580, 630, 736, 1056, 1066, 1089
Bme1390I CCNGG 4 cut(s) 28, 362, 812, 886
Bme18I GGWCC 3 cut(s) 24, 431, 652
BmeRI GACNNNNNGTC 1 cut(s) 1098
BmeT110I CYCGRG 1 cut(s) 951
BmgBI CACGTC 1 cut(s) 305
BmgT120I GGNCC 5 cut(s) 24, 104, 431, 652, 996
BmiI GGNNCC 3 cut(s) 6, 79, 105
BmrFI CCNGG 4 cut(s) 28, 362, 812, 886
BmrI ACTGGG 2 cut(s) 526, 1104
BmsI GCATC 2 cut(s) 534, 1135
BmuI ACTGGG 2 cut(s) 526, 1104
BpiI GAAGAC 1 cut(s) 429
Bpu10I CCTNAGC 2 cut(s) 270, 1008
Bpu1102I GCTNAGC 2 cut(s) 123, 819
BpuEI CTTGAG 1 cut(s) 767
BpuMI CCSGG 2 cut(s) 812, 886
BsaBI GATNNNNATC 1 cut(s) 52
BsaJI CCNNGG 2 cut(s) 27, 595
BsaXI ACNNNNNCTCC 8 cut(s) 23, 53, 145, 175, 211, 241, 313, 343
Bsc4I CCNNNNNNNGG 3 cut(s) 367, 516, 832
Bse1I ACTGG 4 cut(s) 237, 521, 1099, 1109
Bse8I GATNNNNATC 1 cut(s) 52
BseBI CCWGG 2 cut(s) 28, 362
BseDI CCNNGG 2 cut(s) 27, 595
BseGI GGATG 2 cut(s) 241, 807
BseJI GATNNNNATC 1 cut(s) 52
BseLI CCNNNNNNNGG 3 cut(s) 367, 516, 832
BseMII CTCAG 6 cut(s) 114, 284, 326, 528, 810, 999
BseNI ACTGG 4 cut(s) 237, 521, 1099, 1109
BseRI GAGGAG 3 cut(s) 183, 216, 983
BseX3I CGGCCG 1 cut(s) 507
BseXI GCAGC 5 cut(s) 52, 721, 1066, 1076, 1099
BseYI CCCAGC 1 cut(s) 691
Bsh1285I CGRYCG 3 cut(s) 56, 510, 575
BshFI GGCC 3 cut(s) 106, 509, 998
BshNI GGYRCC 1 cut(s) 4
BsiEI CGRYCG 3 cut(s) 56, 510, 575
BsiHKAI GWGCWC 2 cut(s) 618, 825
BsiHKCI CYCGRG 1 cut(s) 951
BsiSI CCGG 3 cut(s) 393, 812, 885
BslFI GGGAC 1 cut(s) 1097
BslI CCNNNNNNNGG 3 cut(s) 367, 516, 832
BsmAI GTCTC 1 cut(s) 698
BsmBI CGTCTC 1 cut(s) 698
BsmFI GGGAC 1 cut(s) 1097
BsmI GAATGC 2 cut(s) 527, 799
BsnI GGCC 3 cut(s) 106, 509, 998
BsoBI CYCGRG 1 cut(s) 951
Bsp1286I GDGCHC 2 cut(s) 618, 825
Bsp143I GATC 5 cut(s) 53, 399, 488, 572, 894
Bsp1720I GCTNAGC 2 cut(s) 123, 819
BspACI CCGC 4 cut(s) 101, 578, 628, 1013
BspANI GGCC 3 cut(s) 106, 509, 998
BspCNI CTCAG 6 cut(s) 115, 283, 325, 529, 811, 1000
BspHI TCATGA 1 cut(s) 958
BspLI GGNNCC 3 cut(s) 6, 79, 105
BspMI ACCTGC 1 cut(s) 905
BspPI GGATC 1 cut(s) 483
BspQI GCTCTTC 2 cut(s) 874, 904
BspT107I GGYRCC 1 cut(s) 4
BspTI CTTAAG 1 cut(s) 851
BsrI ACTGG 4 cut(s) 237, 521, 1099, 1109
BssECI CCNNGG 2 cut(s) 27, 595
BssMI GATC 5 cut(s) 53, 399, 488, 572, 894
Bst2UI CCWGG 2 cut(s) 28, 362
Bst4CI ACNGT 4 cut(s) 435, 596, 718, 927
Bst6I CTCTTC 4 cut(s) 874, 904, 984, 1029
BstAFI CTTAAG 1 cut(s) 851
BstAPI GCANNNNNTGC 1 cut(s) 477
BstDEI CTNAG 6 cut(s) 123, 270, 312, 537, 819, 1008
BstDSI CCRYGG 1 cut(s) 595
BstENI CCTNNNNNAGG 1 cut(s) 365
BstF5I GGATG 2 cut(s) 241, 807
BstHHI GCGC 2 cut(s) 1021, 1087
BstKTI GATC 5 cut(s) 56, 402, 491, 575, 897
BstMAI GTCTC 1 cut(s) 698
BstMBI GATC 5 cut(s) 53, 399, 488, 572, 894
BstMCI CGRYCG 3 cut(s) 56, 510, 575
BstMWI GCNNNNNNNGC 9 cut(s) 65, 98, 179, 188, 212, 221, 266, 477, 1004
BstNI CCWGG 2 cut(s) 28, 362
BstSCI CCNGG 4 cut(s) 26, 360, 810, 884
BstSFI CTRYAG 3 cut(s) 186, 219, 643
BstV1I GCAGC 5 cut(s) 52, 721, 1066, 1076, 1099
BstV2I GAAGAC 1 cut(s) 429
BstX2I RGATCY 1 cut(s) 894
BstYI RGATCY 1 cut(s) 894
BstZI CGGCCG 1 cut(s) 507
BsuRI GGCC 3 cut(s) 106, 509, 998
BtgI CCRYGG 1 cut(s) 595
BtrI CACGTC 1 cut(s) 305
BtsCI GGATG 2 cut(s) 241, 807
BtsI GCAGTG 2 cut(s) 301, 1074
BtsIMutI CAGTG 4 cut(s) 230, 301, 453, 1074
BveI ACCTGC 1 cut(s) 905
CciI TCATGA 1 cut(s) 958
CfoI GCGC 2 cut(s) 1021, 1087
Cfr13I GGNCC 5 cut(s) 24, 104, 431, 652, 996
CseI GACGC 3 cut(s) 27, 204, 286
Csp6I GTAC 1 cut(s) 309
CspCI CAANNNNNGTGG 2 cut(s) 189, 224
CviAII CATG 1 cut(s) 959
CviQI GTAC 1 cut(s) 309
DdeI CTNAG 6 cut(s) 123, 270, 312, 537, 819, 1008
DpnI GATC 5 cut(s) 55, 401, 490, 574, 896
DpnII GATC 5 cut(s) 53, 399, 488, 572, 894
DriI GACNNNNNGTC 1 cut(s) 1098
EaeI YGGCCR 1 cut(s) 507
EagI CGGCCG 1 cut(s) 507
Eam1104I CTCTTC 4 cut(s) 874, 904, 984, 1029
Eam1105I GACNNNNNGTC 1 cut(s) 1098
EarI CTCTTC 4 cut(s) 874, 904, 984, 1029
Ecl136II GAGCTC 1 cut(s) 823
EclXI CGGCCG 1 cut(s) 507
Eco24I GRGCYC 1 cut(s) 825
Eco47I GGWCC 3 cut(s) 24, 431, 652
Eco52I CGGCCG 1 cut(s) 507
Eco53kI GAGCTC 1 cut(s) 823
Eco57I CTGAAG 1 cut(s) 1008
Eco88I CYCGRG 1 cut(s) 951
EcoICRI GAGCTC 1 cut(s) 823
EcoNI CCTNNNNNAGG 1 cut(s) 365
EcoRII CCWGG 2 cut(s) 26, 360
EcoT22I ATGCAT 1 cut(s) 527
EcoT38I GRGCYC 1 cut(s) 825
Esp3I CGTCTC 1 cut(s) 698
FaeI CATG 1 cut(s) 962
FaiI YATR 7 cut(s) 188, 414, 482, 711, 960, 981, 1082
FaqI GGGAC 1 cut(s) 1097
FatI CATG 1 cut(s) 958
FauI CCCGC 1 cut(s) 94
FblI GTMKAC 1 cut(s) 218
Fnu4HI GCNGC 7 cut(s) 66, 579, 629, 735, 1055, 1065, 1088
FokI GGATG 2 cut(s) 248, 794
FriOI GRGCYC 1 cut(s) 825
Fsp4HI GCNGC 7 cut(s) 66, 579, 629, 735, 1055, 1065, 1088
FspBI CTAG 5 cut(s) 263, 461, 1061, 1130, 1162
FspI TGCGCA 1 cut(s) 1020
GlaI GCGC 2 cut(s) 1020, 1086
GluI GCNGC 7 cut(s) 66, 579, 629, 735, 1055, 1065, 1088
GsaI CCCAGC 1 cut(s) 695
HaeIII GGCC 3 cut(s) 106, 509, 998
HapII CCGG 3 cut(s) 393, 812, 885
HgaI GACGC 3 cut(s) 27, 204, 286
HhaI GCGC 2 cut(s) 1021, 1087
Hin1II CATG 1 cut(s) 962
Hin6I GCGC 2 cut(s) 1019, 1085
HinP1I GCGC 2 cut(s) 1019, 1085
HincII GTYRAC 1 cut(s) 721
HindII GTYRAC 1 cut(s) 721
HinfI GANTC 5 cut(s) 533, 608, 742, 847, 870
HpaII CCGG 3 cut(s) 393, 812, 885
HphI GGTGA 5 cut(s) 123, 158, 382, 542, 1060
Hpy166II GTNNAC 5 cut(s) 219, 321, 451, 655, 721
Hpy188I TCNGA 9 cut(s) 43, 82, 286, 315, 428, 500, 538, 613, 923
Hpy188III TCNNGA 4 cut(s) 746, 951, 959, 1130
Hpy8I GTNNAC 5 cut(s) 219, 321, 451, 655, 721
Hpy99I CGWCG 7 cut(s) 43, 112, 139, 254, 280, 306, 348
HpyAV CCTTC 4 cut(s) 82, 598, 661, 1125
HpyCH4III ACNGT 4 cut(s) 435, 596, 718, 927
HpyCH4IV ACGT 3 cut(s) 304, 707, 946
HpyCH4V TGCA 7 cut(s) 294, 480, 525, 757, 785, 797, 1148
HpyF10VI GCNNNNNNNGC 9 cut(s) 65, 98, 179, 188, 212, 221, 266, 477, 1004
HpyF3I CTNAG 6 cut(s) 123, 270, 312, 537, 819, 1008
HpySE526I ACGT 3 cut(s) 304, 707, 946
Hsp92II CATG 1 cut(s) 962
HspAI GCGC 2 cut(s) 1019, 1085
Kzo9I GATC 5 cut(s) 53, 399, 488, 572, 894
LguI GCTCTTC 2 cut(s) 874, 904
LmnI GCTCC 4 cut(s) 196, 229, 613, 828
Lsp1109I GCAGC 5 cut(s) 52, 721, 1066, 1076, 1099
LweI GCATC 2 cut(s) 534, 1135
MaeI CTAG 5 cut(s) 263, 461, 1061, 1130, 1162
MaeII ACGT 3 cut(s) 304, 707, 946
MaeIII GTNAC 2 cut(s) 129, 530
MalI GATC 5 cut(s) 55, 401, 490, 574, 896
MboI GATC 5 cut(s) 53, 399, 488, 572, 894
MflI RGATCY 1 cut(s) 894
MhlI GDGCHC 2 cut(s) 618, 825
MluCI AATT 5 cut(s) 71, 378, 483, 677, 773
MlyI GAGTC 3 cut(s) 527, 617, 879
MmeI TCCRAC 4 cut(s) 21, 105, 591, 946
Mph1103I ATGCAT 1 cut(s) 527
MseI TTAA 1 cut(s) 852
MspCI CTTAAG 1 cut(s) 851
MspI CCGG 3 cut(s) 393, 812, 885
MspR9I CCNGG 4 cut(s) 28, 362, 812, 886
Mva1269I GAATGC 2 cut(s) 527, 799
MvaI CCWGG 2 cut(s) 28, 362
MwoI GCNNNNNNNGC 9 cut(s) 65, 98, 179, 188, 212, 221, 266, 477, 1004
NciI CCSGG 2 cut(s) 812, 886
NdeII GATC 5 cut(s) 53, 399, 488, 572, 894
NlaIII CATG 1 cut(s) 962
NlaIV GGNNCC 3 cut(s) 6, 79, 105
NmuCI GTSAC 2 cut(s) 129, 530
NsbI TGCGCA 1 cut(s) 1020
NsiI ATGCAT 1 cut(s) 527
PaeR7I CTCGAG 1 cut(s) 951
PagI TCATGA 1 cut(s) 958
PaqCI CACCTGC 1 cut(s) 905
PciSI GCTCTTC 2 cut(s) 874, 904
PcsI WCGNNNNNNNCGW 2 cut(s) 104, 249
PctI GAATGC 2 cut(s) 527, 799
PfeI GAWTC 2 cut(s) 742, 847
PflFI GACNNNGTC 3 cut(s) 254, 280, 716
PfoI TCCNGGA 1 cut(s) 810
PkrI GCNGC 7 cut(s) 67, 580, 630, 736, 1056, 1066, 1089
Ple19I CGATCG 2 cut(s) 56, 575
PleI GAGTC 3 cut(s) 527, 616, 878
PpsI GAGTC 3 cut(s) 527, 616, 878
Psp124BI GAGCTC 1 cut(s) 825
Psp6I CCWGG 2 cut(s) 26, 360
PspFI CCCAGC 1 cut(s) 691
PspGI CCWGG 2 cut(s) 26, 360
PspN4I GGNNCC 3 cut(s) 6, 79, 105
PspPI GGNCC 5 cut(s) 24, 104, 431, 652, 996
PsuI RGATCY 1 cut(s) 894
PsyI GACNNNGTC 3 cut(s) 254, 280, 716
PvuI CGATCG 2 cut(s) 56, 575
RsaI GTAC 1 cut(s) 310
RsaNI GTAC 1 cut(s) 309
SacI GAGCTC 1 cut(s) 825
SapI GCTCTTC 2 cut(s) 874, 904
SaqAI TTAA 1 cut(s) 852
SatI GCNGC 7 cut(s) 66, 579, 629, 735, 1055, 1065, 1088
Sau3AI GATC 5 cut(s) 53, 399, 488, 572, 894
Sau96I GGNCC 5 cut(s) 24, 104, 431, 652, 996
SchI GAGTC 3 cut(s) 527, 617, 879
ScrFI CCNGG 4 cut(s) 28, 362, 812, 886
SduI GDGCHC 2 cut(s) 618, 825
SfaNI GCATC 2 cut(s) 534, 1135
SfcI CTRYAG 3 cut(s) 186, 219, 643
Sfr274I CTCGAG 1 cut(s) 951
SinI GGWCC 3 cut(s) 24, 431, 652
SlaI CTCGAG 1 cut(s) 951
SmlI CTYRAG 3 cut(s) 746, 851, 951
SmoI CTYRAG 3 cut(s) 746, 851, 951
Sse9I AATT 5 cut(s) 71, 378, 483, 677, 773
SsiI CCGC 4 cut(s) 101, 578, 628, 1013
SspMI CTAG 5 cut(s) 263, 461, 1061, 1130, 1162
SstI GAGCTC 1 cut(s) 825
StyD4I CCNGG 4 cut(s) 26, 360, 810, 884
TaaI ACNGT 4 cut(s) 435, 596, 718, 927
TaiI ACGT 3 cut(s) 307, 710, 949
TaqI TCGA 7 cut(s) 14, 176, 249, 301, 402, 487, 952
TasI AATT 5 cut(s) 71, 378, 483, 677, 773
TauI GCSGC 2 cut(s) 581, 631
TfiI GAWTC 2 cut(s) 742, 847
Tru1I TTAA 1 cut(s) 852
Tru9I TTAA 1 cut(s) 852
TscAI CASTG 4 cut(s) 237, 301, 453, 1074
TseFI GTSAC 2 cut(s) 129, 530
TseI GCWGC 5 cut(s) 65, 734, 1054, 1064, 1087
Tsp45I GTSAC 2 cut(s) 129, 530
TspDTI ATGAA 4 cut(s) 412, 429, 860, 947
TspRI CASTG 4 cut(s) 237, 301, 453, 1074
Tth111I GACNNNGTC 3 cut(s) 254, 280, 716
Vha464I CTTAAG 1 cut(s) 851
VpaK11BI GGWCC 3 cut(s) 24, 431, 652
XagI CCTNNNNNAGG 1 cut(s) 365
XapI RAATTY 1 cut(s) 677
XbaI TCTAGA 1 cut(s) 1129
XcmI CCANNNNNNNNNTGG 1 cut(s) 834
XhoI CTCGAG 1 cut(s) 951
XmiI GTMKAC 1 cut(s) 218
XspI CTAG 5 cut(s) 263, 461, 1061, 1130, 1162
Zsp2I ATGCAT 1 cut(s) 527
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.