FvH4_6g40350

TdcA1-ORF2 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000776
Physical Location & Seq
Forward (+)
31894407 .. 31899732
5326 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g40350.t1

Sequence Viewer

Length: 816 bp
ATGTCACATAGAGGTATTTACAGTGCAACTACATTTGAGATGGGTATTGCAAATAGAGATATTGAGAATGTGACTCTTGAACCATATCAAGAAGCCTCGACGTCTAATATCCCCGACACGGAGACTATTCGCATTAACAACGACATCCACTTCCAACCCTGCGAGTACGTTCCCATTTCTAATTTAGAGTTTGACTTCGGTTCACTTCCATTCATCCCACCAACTAAGGACTTCATTGACGACAAAGAGGAAGACTCAGACGATCATTCATATGAACGCTTGCCGAAAACCGGAGGACCTCCCCAGAAAGGCAACCGGGGTGTGGTGAACAACGCAAAGGTGGTTGATATTGTGAAAAGCACGGGGAAGAAGATCGACTTGGACTTTGATTGGGAAGTTATTAATGGACCTCGTAATTCTGATTGTTTTTTTATCATTCATTTTAATGATGTAAAAGCCATTAAATGGATCAATAAAAGGGCGGCAAGTGTATTCCGTGAATGGAAGCATGACTTGTCCGAGATTCATAAGCTCGGGGGGAGAGACGTGATTTTGGAAGAGCTTTTGCACAGGCGGGATCAGTGGGAGTGGCTTTGCACTCATTTTGAATCGGACAAGTACAAGAGACGATCGGTTGCCAACTCCAGCAACCGTGGTAAGGAGTTAGAGCACCACTCAGGGAGGAAACCTATCATTTACCGGGTGGCCGAGCTAAAGGATAAAGGTGCTTCATTACCGGTGGTTGACATGTACCCGGTGACATACGACATCAACCAGCCTAAAGTTGCTGAGCATTATGTAAGTATCAATACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4216 DUF4218 Transpos_assoc Transposase_21 Transposase_24

Protein Analysis

272

Amino Acids

31.27

Weight (kDa)

5.79

Isoelectric Point (pI)

35.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 104
AccB7I CCANNNNNTGG 1 cut(s) 465
AciI CCGC 2 cut(s) 482, 574
AclWI GGATC 2 cut(s) 476, 585
AcoI YGGCCR 1 cut(s) 705
AcyI GRCGYC 1 cut(s) 101
AfaI GTAC 3 cut(s) 167, 620, 752
AfiI CCNNNNNNNGG 6 cut(s) 118, 290, 308, 322, 465, 658
AflIII ACRYGT 1 cut(s) 747
AgeI ACCGGT 1 cut(s) 736
AgsI TTSAA 2 cut(s) 80, 608
AjiI CACGTC 1 cut(s) 547
AjuI GAANNNNNNNTTGG 2 cut(s) 362, 394
AluBI AGCT 3 cut(s) 532, 562, 712
AluI AGCT 3 cut(s) 532, 562, 712
Alw21I GWGCWC 1 cut(s) 672
Alw26I GTCTC 3 cut(s) 116, 537, 619
AlwI GGATC 2 cut(s) 476, 585
Ama87I CYCGRG 1 cut(s) 533
AoxI GGCC 1 cut(s) 705
ArsI GACNNNNNNTTYG 2 cut(s) 368, 400
AseI ATTAAT 1 cut(s) 402
AsiGI ACCGGT 1 cut(s) 736
AspS9I GGNCC 2 cut(s) 296, 407
AsuC2I CCSGG 3 cut(s) 317, 701, 755
AsuHPI GGTGA 2 cut(s) 337, 769
AvaI CYCGRG 1 cut(s) 533
AvaII GGWCC 2 cut(s) 296, 407
BbsI GAAGAC 1 cut(s) 258
Bbv12I GWGCWC 1 cut(s) 672
BccI CCATC 1 cut(s) 34
BcnI CCSGG 3 cut(s) 317, 701, 755
BcoDI GTCTC 3 cut(s) 116, 537, 619
BisI GCNGC 1 cut(s) 483
BlpI GCTNAGC 1 cut(s) 789
BlsI GCNGC 1 cut(s) 484
Bme1390I CCNGG 3 cut(s) 317, 701, 755
Bme18I GGWCC 2 cut(s) 296, 407
BmeT110I CYCGRG 1 cut(s) 533
BmgBI CACGTC 1 cut(s) 547
BmgT120I GGNCC 2 cut(s) 296, 407
BmrFI CCNGG 3 cut(s) 317, 701, 755
BpiI GAAGAC 1 cut(s) 258
BplI GAGNNNNNCTC 4 cut(s) 239, 271, 659, 691
BpmI CTGGAG 1 cut(s) 628
Bpu1102I GCTNAGC 1 cut(s) 789
BpuMI CCSGG 3 cut(s) 317, 701, 755
BsaHI GRCGYC 1 cut(s) 101
BsaJI CCNNGG 2 cut(s) 316, 652
BsaWI WCCGGW 2 cut(s) 290, 736
Bsc4I CCNNNNNNNGG 6 cut(s) 118, 290, 308, 322, 465, 658
Bse118I RCCGGY 1 cut(s) 736
BseDI CCNNGG 2 cut(s) 316, 652
BseGI GGATG 2 cut(s) 144, 213
BseLI CCNNNNNNNGG 6 cut(s) 118, 290, 308, 322, 465, 658
BseMII CTCAG 3 cut(s) 270, 690, 780
Bsh1285I CGRYCG 1 cut(s) 632
BshFI GGCC 1 cut(s) 707
BshTI ACCGGT 1 cut(s) 736
BsiEI CGRYCG 1 cut(s) 632
BsiHKAI GWGCWC 1 cut(s) 672
BsiHKCI CYCGRG 1 cut(s) 533
BsiSI CCGG 5 cut(s) 291, 316, 700, 737, 755
BslI CCNNNNNNNGG 6 cut(s) 118, 290, 308, 322, 465, 658
BsmAI GTCTC 3 cut(s) 116, 537, 619
BsmBI CGTCTC 2 cut(s) 537, 619
BsnI GGCC 1 cut(s) 707
BsoBI CYCGRG 1 cut(s) 533
Bsp1286I GDGCHC 1 cut(s) 672
Bsp143I GATC 5 cut(s) 262, 372, 468, 577, 629
Bsp1720I GCTNAGC 1 cut(s) 789
BspACI CCGC 2 cut(s) 482, 574
BspANI GGCC 1 cut(s) 707
BspCNI CTCAG 3 cut(s) 269, 689, 781
BspPI GGATC 2 cut(s) 476, 585
BspQI GCTCTTC 1 cut(s) 552
BsrFI RCCGGY 1 cut(s) 736
BssAI RCCGGY 1 cut(s) 736
BssECI CCNNGG 2 cut(s) 316, 652
BssMI GATC 5 cut(s) 262, 372, 468, 577, 629
BssNI GRCGYC 1 cut(s) 101
Bst4CI ACNGT 2 cut(s) 23, 653
Bst6I CTCTTC 1 cut(s) 552
BstACI GRCGYC 1 cut(s) 101
BstC8I GCNNGC 1 cut(s) 281
BstDEI CTNAG 4 cut(s) 225, 256, 676, 789
BstDSI CCRYGG 1 cut(s) 652
BstF5I GGATG 2 cut(s) 144, 213
BstKTI GATC 5 cut(s) 265, 375, 471, 580, 632
BstMAI GTCTC 3 cut(s) 116, 537, 619
BstMBI GATC 5 cut(s) 262, 372, 468, 577, 629
BstMCI CGRYCG 1 cut(s) 632
BstNSI RCATGY 1 cut(s) 751
BstSCI CCNGG 3 cut(s) 315, 699, 753
BstV2I GAAGAC 1 cut(s) 258
BsuRI GGCC 1 cut(s) 707
BtgI CCRYGG 1 cut(s) 652
BtrI CACGTC 1 cut(s) 547
BtsCI GGATG 2 cut(s) 144, 213
BtsIMutI CAGTG 2 cut(s) 28, 587
Cac8I GCNNGC 1 cut(s) 281
Cfr10I RCCGGY 1 cut(s) 736
Cfr13I GGNCC 2 cut(s) 296, 407
Csp6I GTAC 3 cut(s) 166, 619, 751
CspAI ACCGGT 1 cut(s) 736
CviAII CATG 2 cut(s) 509, 748
CviJI RGCY 8 cut(s) 95, 458, 532, 562, 592, 707, 712, 778
CviKI_1 RGCY 8 cut(s) 95, 458, 532, 562, 592, 707, 712, 778
CviQI GTAC 3 cut(s) 166, 619, 751
DdeI CTNAG 4 cut(s) 225, 256, 676, 789
DpnI GATC 5 cut(s) 264, 374, 470, 579, 631
DpnII GATC 5 cut(s) 262, 372, 468, 577, 629
EaeI YGGCCR 1 cut(s) 705
Eam1104I CTCTTC 1 cut(s) 552
EarI CTCTTC 1 cut(s) 552
Eco47I GGWCC 2 cut(s) 296, 407
Eco88I CYCGRG 1 cut(s) 533
EcoO109I RGGNCCY 1 cut(s) 296
Esp3I CGTCTC 2 cut(s) 537, 619
FaeI CATG 2 cut(s) 512, 751
FaiI YATR 9 cut(s) 9, 85, 271, 273, 510, 528, 749, 763, 798
FalI AAGNNNNNCTT 4 cut(s) 362, 394, 497, 529
FatI CATG 2 cut(s) 508, 747
FauI CCCGC 1 cut(s) 567
FauNDI CATATG 1 cut(s) 271
Fnu4HI GCNGC 1 cut(s) 483
FokI GGATG 2 cut(s) 131, 200
Fsp4HI GCNGC 1 cut(s) 483
GluI GCNGC 1 cut(s) 483
GsuI CTGGAG 1 cut(s) 628
HaeIII GGCC 1 cut(s) 707
HapII CCGG 5 cut(s) 291, 316, 700, 737, 755
Hin1I GRCGYC 1 cut(s) 101
Hin1II CATG 2 cut(s) 512, 751
HincII GTYRAC 1 cut(s) 745
HindII GTYRAC 1 cut(s) 745
HinfI GANTC 4 cut(s) 73, 254, 523, 608
HpaII CCGG 5 cut(s) 291, 316, 700, 737, 755
HphI GGTGA 2 cut(s) 337, 769
Hpy166II GTNNAC 3 cut(s) 203, 328, 745
Hpy188I TCNGA 4 cut(s) 259, 421, 520, 613
Hpy188III TCNNGA 2 cut(s) 77, 89
Hpy8I GTNNAC 3 cut(s) 203, 328, 745
Hpy99I CGWCG 1 cut(s) 103
HpyCH4III ACNGT 2 cut(s) 23, 653
HpyCH4IV ACGT 3 cut(s) 101, 168, 546
HpyCH4V TGCA 4 cut(s) 26, 50, 568, 597
HpyF3I CTNAG 4 cut(s) 225, 256, 676, 789
HpySE526I ACGT 3 cut(s) 101, 168, 546
Hsp92I GRCGYC 1 cut(s) 101
Hsp92II CATG 2 cut(s) 512, 751
Kzo9I GATC 5 cut(s) 262, 372, 468, 577, 629
LguI GCTCTTC 1 cut(s) 552
MaeII ACGT 3 cut(s) 101, 168, 546
MaeIII GTNAC 3 cut(s) 3, 70, 757
MalI GATC 5 cut(s) 264, 374, 470, 579, 631
MboI GATC 5 cut(s) 262, 372, 468, 577, 629
MboII GAAGA 4 cut(s) 263, 379, 382, 569
MhlI GDGCHC 1 cut(s) 672
MluCI AATT 2 cut(s) 181, 415
MlyI GAGTC 2 cut(s) 67, 248
MmeI TCCRAC 1 cut(s) 178
MnlI CCTC 7 cut(s) 5, 106, 241, 287, 309, 420, 675
MseI TTAA 4 cut(s) 135, 402, 444, 462
MslI CAYNNNNRTG 2 cut(s) 270, 444
MspI CCGG 5 cut(s) 291, 316, 700, 737, 755
MspR9I CCNGG 3 cut(s) 317, 701, 755
NciI CCSGG 3 cut(s) 317, 701, 755
NdeI CATATG 1 cut(s) 271
NdeII GATC 5 cut(s) 262, 372, 468, 577, 629
NlaIII CATG 2 cut(s) 512, 751
NmeAIII GCCGAG 1 cut(s) 733
NmuCI GTSAC 3 cut(s) 3, 70, 757
NspI RCATGY 1 cut(s) 751
PciI ACATGT 1 cut(s) 747
PciSI GCTCTTC 1 cut(s) 552
PfeI GAWTC 2 cut(s) 523, 608
PflMI CCANNNNNTGG 1 cut(s) 465
PinAI ACCGGT 1 cut(s) 736
PkrI GCNGC 1 cut(s) 484
Ple19I CGATCG 1 cut(s) 632
PleI GAGTC 2 cut(s) 67, 248
PpsI GAGTC 2 cut(s) 67, 248
PpuMI RGGWCCY 1 cut(s) 296
PscI ACATGT 1 cut(s) 747
PshBI ATTAAT 1 cut(s) 402
Psp5II RGGWCCY 1 cut(s) 296
PspPI GGNCC 2 cut(s) 296, 407
PspPPI RGGWCCY 1 cut(s) 296
PvuI CGATCG 1 cut(s) 632
RsaI GTAC 3 cut(s) 167, 620, 752
RsaNI GTAC 3 cut(s) 166, 619, 751
RseI CAYNNNNRTG 2 cut(s) 270, 444
SapI GCTCTTC 1 cut(s) 552
SaqAI TTAA 4 cut(s) 135, 402, 444, 462
SatI GCNGC 1 cut(s) 483
Sau3AI GATC 5 cut(s) 262, 372, 468, 577, 629
Sau96I GGNCC 2 cut(s) 296, 407
SchI GAGTC 2 cut(s) 67, 248
ScrFI CCNGG 3 cut(s) 317, 701, 755
SduI GDGCHC 1 cut(s) 672
SinI GGWCC 2 cut(s) 296, 407
SmiMI CAYNNNNRTG 2 cut(s) 270, 444
Sse9I AATT 2 cut(s) 181, 415
SsiI CCGC 2 cut(s) 482, 574
StyD4I CCNGG 3 cut(s) 315, 699, 753
TaaI ACNGT 2 cut(s) 23, 653
TaiI ACGT 3 cut(s) 104, 171, 549
TaqI TCGA 2 cut(s) 98, 375
TasI AATT 2 cut(s) 181, 415
TatI WGTACW 1 cut(s) 618
TauI GCSGC 1 cut(s) 485
TfiI GAWTC 2 cut(s) 523, 608
Tru1I TTAA 4 cut(s) 135, 402, 444, 462
Tru9I TTAA 4 cut(s) 135, 402, 444, 462
TscAI CASTG 2 cut(s) 28, 587
TseFI GTSAC 3 cut(s) 3, 70, 757
Tsp45I GTSAC 3 cut(s) 3, 70, 757
TspDTI ATGAA 7 cut(s) 202, 223, 258, 288, 428, 515, 720
TspGWI ACGGA 2 cut(s) 134, 485
TspRI CASTG 2 cut(s) 28, 587
Van91I CCANNNNNTGG 1 cut(s) 465
VpaK11BI GGWCC 2 cut(s) 296, 407
VspI ATTAAT 1 cut(s) 402
XceI RCATGY 1 cut(s) 751
ZraI GACGTC 1 cut(s) 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.