Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0000776

Physical Location & Seq

Genomic Coordinates Forward (+)

11181733 .. 11183121

Gene Structure 1389 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g18893.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGAACTACATACTTTGTGATTGGCAGACACGATCGGCGGCTAACAAGACCAACCGTGGTAAGAAGGAGTCGGAGCACCACACGGGGCGGCTACCTATCATCTACAGGGTGGTCCACCACAAAGAGAAGGGTAAGGAATTTCCTGTTATCCCAACTTACACAGAGACGTATGACACAGTCAACGACCCTAAAGCTGCCAAGAATCTTAAGAATGCAAACCCTGACATCCCGGAGGCTGAGCTCCCACCTTTGGAGTGGTCAATGAATCTTAAGGTGCTTGAAGCAAGAGTCGGCAGAAGAGCCGGGAAAGAGATCCGTGGTCTTGGAAGAGCAGGTGTCCGACAGTTATCATCTTCCACTCCACGTTCTCGAGTTCATGAGGTGGAGGAGAGATTACATATTGCTGAGGAGAGGGCCGAAAAAGCTGAGGCGGTTGTGCAAAAAGTTAGTGAAGAGATGACATTGGTGAAGCAGCAACTAGCAGCAGTGATGTCTTTTATGGCGCAGCAGACTGGGCGTCCTCCACCAGTCCCTTCCCAACAACCTCTAGAAGAAAATGTTGATGCAGCTAAGAGGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transposase_24

Protein Analysis

194

Amino Acids

21.81

Weight (kDa)

9.32

Isoelectric Point (pI)

52.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000776)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15161 FvH4_1g18892 FvH4_1g18893 FvH4_1g20162 FvH4_1g26653 FvH4_1g29050 FvH4_1g29090 FvH4_1g29091 FvH4_2g00890 FvH4_2g00890 FvH4_2g14380 FvH4_2g17540 FvH4_2g19090 FvH4_2g19770 FvH4_2g30343 FvH4_2g30344 FvH4_2g30380 FvH4_2g34010 FvH4_3g18731 FvH4_3g21360 FvH4_3g23880 FvH4_3g26330 FvH4_3g26702 FvH4_3g30710 FvH4_3g30880 FvH4_3g31911 FvH4_3g32572 FvH4_3g38790 FvH4_3g45880 FvH4_4g03280 FvH4_4g08270 FvH4_4g08610 FvH4_4g08911 FvH4_4g10030 FvH4_4g10220 FvH4_4g10221 FvH4_4g10232 FvH4_4g10233 FvH4_4g10364 FvH4_4g14460 FvH4_4g16210 FvH4_4g27150 FvH4_5g06880 FvH4_5g13180 FvH4_5g19450 FvH4_5g20620 FvH4_5g22931 FvH4_5g24202 FvH4_5g24970 FvH4_5g31450 FvH4_5g31660 FvH4_5g32550 FvH4_6g06811 FvH4_6g17172 FvH4_6g17190 FvH4_6g18010 FvH4_6g21800 FvH4_6g21871 FvH4_6g23101 FvH4_6g23360 FvH4_6g24310 FvH4_6g30100 FvH4_6g31520 FvH4_6g31530 FvH4_6g34820 FvH4_6g35510 FvH4_6g40350 FvH4_6g40360 FvH4_7g09590 FvH4_7g16000

Species

Orthologous Gene IDs

fragaria_vesca

FvH4_1g15161 FvH4_1g18892 FvH4_1g18893 FvH4_1g20162 FvH4_1g26653 FvH4_1g29050 FvH4_1g29090 FvH4_1g29091 FvH4_2g00890 FvH4_2g00890 FvH4_2g14380 FvH4_2g17540 FvH4_2g19090 FvH4_2g19770 FvH4_2g30343 FvH4_2g30344 FvH4_2g30380 FvH4_2g34010 FvH4_3g18731 FvH4_3g21360 FvH4_3g23880 FvH4_3g26330 FvH4_3g26702 FvH4_3g30710 FvH4_3g30880 FvH4_3g31911 FvH4_3g32572 FvH4_3g38790 FvH4_3g45880 FvH4_4g03280 FvH4_4g08270 FvH4_4g08610 FvH4_4g08911 FvH4_4g10030 FvH4_4g10220 FvH4_4g10221 FvH4_4g10232 FvH4_4g10233 FvH4_4g10364 FvH4_4g14460 FvH4_4g16210 FvH4_4g27150 FvH4_5g06880 FvH4_5g13180 FvH4_5g19450 FvH4_5g20620 FvH4_5g22931 FvH4_5g24202 FvH4_5g24970 FvH4_5g31450 FvH4_5g31660 FvH4_5g32550 FvH4_6g06811 FvH4_6g17172 FvH4_6g17190 FvH4_6g18010 FvH4_6g21800 FvH4_6g21871 FvH4_6g23101 FvH4_6g23360 FvH4_6g24310 FvH4_6g30100 FvH4_6g31520 FvH4_6g31530 FvH4_6g34820 FvH4_6g35510 FvH4_6g40350 FvH4_6g40360 FvH4_7g09590 FvH4_7g16000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	323
Acc36I	ACCTGC	1 cut(s)	323
AciI	CCGC	3 cut(s)	38, 88, 431
AclWI	GGATC	1 cut(s)	307
AcsI	RAATTY	1 cut(s)	137
AcyI	GRCGYC	1 cut(s)	517
AfiI	CCNNNNNNNGG	1 cut(s)	250
AflII	CTTAAG	2 cut(s)	206, 269
AgsI	TTSAA	1 cut(s)	281
AhdI	GACNNNNNGTC	1 cut(s)	516
AluBI	AGCT	4 cut(s)	194, 241, 425, 569
AluI	AGCT	4 cut(s)	194, 241, 425, 569
Alw21I	GWGCWC	2 cut(s)	78, 243
Alw26I	GTCTC	1 cut(s)	158
AlwI	GGATC	1 cut(s)	307
Ama87I	CYCGRG	1 cut(s)	369
AoxI	GGCC	1 cut(s)	414
ApeKI	GCWGC	5 cut(s)	194, 472, 482, 505, 566
ApoI	RAATTY	1 cut(s)	137
AspLEI	GCGC	1 cut(s)	505
AspS9I	GGNCC	2 cut(s)	112, 414
AsuC2I	CCSGG	2 cut(s)	230, 304
AsuHPI	GGTGA	1 cut(s)	478
AvaI	CYCGRG	1 cut(s)	369
AvaII	GGWCC	1 cut(s)	112
BanII	GRGCYC	1 cut(s)	243
Bbv12I	GWGCWC	2 cut(s)	78, 243
BbvCI	CCTCAGC	2 cut(s)	405, 426
BbvI	GCAGC	5 cut(s)	181, 484, 494, 517, 578
BcnI	CCSGG	2 cut(s)	230, 304
BcoDI	GTCTC	1 cut(s)	158
BfaI	CTAG	3 cut(s)	479, 548, 580
BfmI	CTRYAG	1 cut(s)	103
BfrI	CTTAAG	2 cut(s)	206, 269
BfuAI	ACCTGC	1 cut(s)	323
BisI	GCNGC	7 cut(s)	39, 89, 195, 473, 483, 506, 567
BlpI	GCTNAGC	1 cut(s)	237
BlsI	GCNGC	7 cut(s)	40, 90, 196, 474, 484, 507, 568
Bme1390I	CCNGG	2 cut(s)	230, 304
Bme18I	GGWCC	1 cut(s)	112
BmeRI	GACNNNNNGTC	1 cut(s)	516
BmeT110I	CYCGRG	1 cut(s)	369
BmgT120I	GGNCC	2 cut(s)	112, 414
BmrFI	CCNGG	2 cut(s)	230, 304
BmrI	ACTGGG	1 cut(s)	522
BmsI	GCATC	1 cut(s)	553
BmuI	ACTGGG	1 cut(s)	522
Bpu10I	CCTNAGC	2 cut(s)	405, 426
Bpu1102I	GCTNAGC	1 cut(s)	237
BpuMI	CCSGG	2 cut(s)	230, 304
BsaHI	GRCGYC	1 cut(s)	517
BsaJI	CCNNGG	2 cut(s)	55, 316
Bsc4I	CCNNNNNNNGG	1 cut(s)	250
Bse1I	ACTGG	2 cut(s)	517, 527
BseDI	CCNNGG	2 cut(s)	55, 316
BseGI	GGATG	1 cut(s)	225
BseLI	CCNNNNNNNGG	1 cut(s)	250
BseMII	CTCAG	3 cut(s)	228, 396, 417
BseNI	ACTGG	2 cut(s)	517, 527
BseRI	GAGGAG	2 cut(s)	401, 422
BseXI	GCAGC	5 cut(s)	181, 484, 494, 517, 578
Bsh1285I	CGRYCG	1 cut(s)	35
BshFI	GGCC	1 cut(s)	416
BsiEI	CGRYCG	1 cut(s)	35
BsiHKAI	GWGCWC	2 cut(s)	78, 243
BsiHKCI	CYCGRG	1 cut(s)	369
BsiSI	CCGG	2 cut(s)	230, 303
BslFI	GGGAC	1 cut(s)	515
BslI	CCNNNNNNNGG	1 cut(s)	250
BsmAI	GTCTC	1 cut(s)	158
BsmBI	CGTCTC	1 cut(s)	158
BsmFI	GGGAC	1 cut(s)	515
BsmI	GAATGC	1 cut(s)	217
BsnI	GGCC	1 cut(s)	416
BsoBI	CYCGRG	1 cut(s)	369
Bsp1286I	GDGCHC	2 cut(s)	78, 243
Bsp143I	GATC	2 cut(s)	32, 312
Bsp1720I	GCTNAGC	1 cut(s)	237
BspACI	CCGC	3 cut(s)	38, 88, 431
BspANI	GGCC	1 cut(s)	416
BspCNI	CTCAG	3 cut(s)	229, 397, 418
BspHI	TCATGA	1 cut(s)	376
BspMI	ACCTGC	1 cut(s)	323
BspPI	GGATC	1 cut(s)	307
BspQI	GCTCTTC	2 cut(s)	292, 322
BspTI	CTTAAG	2 cut(s)	206, 269
BsrI	ACTGG	2 cut(s)	517, 527
BssECI	CCNNGG	2 cut(s)	55, 316
BssMI	GATC	2 cut(s)	32, 312
BssNI	GRCGYC	1 cut(s)	517
Bst4CI	ACNGT	3 cut(s)	56, 178, 345
Bst6I	CTCTTC	3 cut(s)	292, 322, 447
BstACI	GRCGYC	1 cut(s)	517
BstAFI	CTTAAG	2 cut(s)	206, 269
BstDEI	CTNAG	4 cut(s)	237, 405, 426, 570
BstDSI	CCRYGG	2 cut(s)	55, 316
BstF5I	GGATG	1 cut(s)	225
BstHHI	GCGC	1 cut(s)	505
BstKTI	GATC	2 cut(s)	35, 315
BstMAI	GTCTC	1 cut(s)	158
BstMBI	GATC	2 cut(s)	32, 312
BstMCI	CGRYCG	1 cut(s)	35
BstMWI	GCNNNNNNNGC	2 cut(s)	422, 514
BstSCI	CCNGG	2 cut(s)	228, 302
BstSFI	CTRYAG	1 cut(s)	103
BstV1I	GCAGC	5 cut(s)	181, 484, 494, 517, 578
BstX2I	RGATCY	1 cut(s)	312
BstYI	RGATCY	1 cut(s)	312
BsuRI	GGCC	1 cut(s)	416
BtgI	CCRYGG	2 cut(s)	55, 316
BtsCI	GGATG	1 cut(s)	225
BtsI	GCAGTG	1 cut(s)	492
BtsIMutI	CAGTG	1 cut(s)	492
BveI	ACCTGC	1 cut(s)	323
CciI	TCATGA	1 cut(s)	376
CfoI	GCGC	1 cut(s)	505
Cfr13I	GGNCC	2 cut(s)	112, 414
CseI	GACGC	1 cut(s)	506
CviAII	CATG	1 cut(s)	377
CviJI	RGCY	9 cut(s)	41, 91, 194, 236, 241, 302, 416, 425, 569
CviKI_1	RGCY	9 cut(s)	41, 91, 194, 236, 241, 302, 416, 425, 569
DdeI	CTNAG	4 cut(s)	237, 405, 426, 570
DpnI	GATC	2 cut(s)	34, 314
DpnII	GATC	2 cut(s)	32, 312
DriI	GACNNNNNGTC	1 cut(s)	516
Eam1104I	CTCTTC	3 cut(s)	292, 322, 447
Eam1105I	GACNNNNNGTC	1 cut(s)	516
EarI	CTCTTC	3 cut(s)	292, 322, 447
Ecl136II	GAGCTC	1 cut(s)	241
Eco24I	GRGCYC	1 cut(s)	243
Eco47I	GGWCC	1 cut(s)	112
Eco53kI	GAGCTC	1 cut(s)	241
Eco88I	CYCGRG	1 cut(s)	369
EcoICRI	GAGCTC	1 cut(s)	241
EcoT38I	GRGCYC	1 cut(s)	243
Esp3I	CGTCTC	1 cut(s)	158
FaeI	CATG	1 cut(s)	380
FaiI	YATR	5 cut(s)	11, 171, 378, 399, 500
FaqI	GGGAC	1 cut(s)	515
FatI	CATG	1 cut(s)	376
Fnu4HI	GCNGC	7 cut(s)	39, 89, 195, 473, 483, 506, 567
FokI	GGATG	1 cut(s)	212
FriOI	GRGCYC	1 cut(s)	243
Fsp4HI	GCNGC	7 cut(s)	39, 89, 195, 473, 483, 506, 567
FspBI	CTAG	3 cut(s)	479, 548, 580
GlaI	GCGC	1 cut(s)	504
GluI	GCNGC	7 cut(s)	39, 89, 195, 473, 483, 506, 567
HaeIII	GGCC	1 cut(s)	416
HapII	CCGG	2 cut(s)	230, 303
HgaI	GACGC	1 cut(s)	506
HhaI	GCGC	1 cut(s)	505
Hin1I	GRCGYC	1 cut(s)	517
Hin1II	CATG	1 cut(s)	380
Hin6I	GCGC	1 cut(s)	503
HinP1I	GCGC	1 cut(s)	503
HincII	GTYRAC	1 cut(s)	181
HindII	GTYRAC	1 cut(s)	181
HinfI	GANTC	4 cut(s)	68, 202, 265, 288
HpaII	CCGG	2 cut(s)	230, 303
HphI	GGTGA	1 cut(s)	478
Hpy166II	GTNNAC	2 cut(s)	115, 181
Hpy188I	TCNGA	2 cut(s)	73, 341
Hpy188III	TCNNGA	3 cut(s)	369, 377, 548
Hpy8I	GTNNAC	2 cut(s)	115, 181
HpyAV	CCTTC	3 cut(s)	58, 121, 543
HpyCH4III	ACNGT	3 cut(s)	56, 178, 345
HpyCH4IV	ACGT	2 cut(s)	167, 364
HpyCH4V	TGCA	3 cut(s)	215, 439, 566
HpyF10VI	GCNNNNNNNGC	2 cut(s)	422, 514
HpyF3I	CTNAG	4 cut(s)	237, 405, 426, 570
HpySE526I	ACGT	2 cut(s)	167, 364
Hsp92I	GRCGYC	1 cut(s)	517
Hsp92II	CATG	1 cut(s)	380
HspAI	GCGC	1 cut(s)	503
Kzo9I	GATC	2 cut(s)	32, 312
LguI	GCTCTTC	2 cut(s)	292, 322
LmnI	GCTCC	2 cut(s)	73, 246
LpnPI	CCDG	8 cut(s)	91, 156, 234, 243, 316, 318, 498, 540
Lsp1109I	GCAGC	5 cut(s)	181, 484, 494, 517, 578
LweI	GCATC	1 cut(s)	553
MaeI	CTAG	3 cut(s)	479, 548, 580
MaeII	ACGT	2 cut(s)	167, 364
MalI	GATC	2 cut(s)	34, 314
MboI	GATC	2 cut(s)	32, 312
MboII	GAAGA	5 cut(s)	309, 339, 345, 464, 563
MflI	RGATCY	1 cut(s)	312
MhlI	GDGCHC	2 cut(s)	78, 243
MluCI	AATT	1 cut(s)	137
MlyI	GAGTC	2 cut(s)	77, 297
MmeI	TCCRAC	2 cut(s)	51, 364
MnlI	CCTC	9 cut(s)	226, 373, 379, 400, 405, 421, 531, 555, 567
MseI	TTAA	2 cut(s)	207, 270
MspCI	CTTAAG	2 cut(s)	206, 269
MspI	CCGG	2 cut(s)	230, 303
MspR9I	CCNGG	2 cut(s)	230, 304
Mva1269I	GAATGC	1 cut(s)	217
MwoI	GCNNNNNNNGC	2 cut(s)	422, 514
NciI	CCSGG	2 cut(s)	230, 304
NdeII	GATC	2 cut(s)	32, 312
NlaIII	CATG	1 cut(s)	380
PaeR7I	CTCGAG	1 cut(s)	369
PagI	TCATGA	1 cut(s)	376
PaqCI	CACCTGC	1 cut(s)	323
PciSI	GCTCTTC	2 cut(s)	292, 322
PctI	GAATGC	1 cut(s)	217
PfeI	GAWTC	2 cut(s)	202, 265
PflFI	GACNNNGTC	1 cut(s)	176
PfoI	TCCNGGA	1 cut(s)	228
PkrI	GCNGC	7 cut(s)	40, 90, 196, 474, 484, 507, 568
Ple19I	CGATCG	1 cut(s)	35
PleI	GAGTC	2 cut(s)	76, 296
PpsI	GAGTC	2 cut(s)	76, 296
Psp124BI	GAGCTC	1 cut(s)	243
PspPI	GGNCC	2 cut(s)	112, 414
PsuI	RGATCY	1 cut(s)	312
PsyI	GACNNNGTC	1 cut(s)	176
PvuI	CGATCG	1 cut(s)	35
SacI	GAGCTC	1 cut(s)	243
SapI	GCTCTTC	2 cut(s)	292, 322
SaqAI	TTAA	2 cut(s)	207, 270
SatI	GCNGC	7 cut(s)	39, 89, 195, 473, 483, 506, 567
Sau3AI	GATC	2 cut(s)	32, 312
Sau96I	GGNCC	2 cut(s)	112, 414
SchI	GAGTC	2 cut(s)	77, 297
ScrFI	CCNGG	2 cut(s)	230, 304
SduI	GDGCHC	2 cut(s)	78, 243
SfaNI	GCATC	1 cut(s)	553
SfcI	CTRYAG	1 cut(s)	103
Sfr274I	CTCGAG	1 cut(s)	369
SinI	GGWCC	1 cut(s)	112
SlaI	CTCGAG	1 cut(s)	369
SmlI	CTYRAG	3 cut(s)	206, 269, 369
SmoI	CTYRAG	3 cut(s)	206, 269, 369
Sse9I	AATT	1 cut(s)	137
SsiI	CCGC	3 cut(s)	38, 88, 431
SspMI	CTAG	3 cut(s)	479, 548, 580
SstI	GAGCTC	1 cut(s)	243
StyD4I	CCNGG	2 cut(s)	228, 302
TaaI	ACNGT	3 cut(s)	56, 178, 345
TaiI	ACGT	2 cut(s)	170, 367
TaqI	TCGA	1 cut(s)	370
TasI	AATT	1 cut(s)	137
TauI	GCSGC	2 cut(s)	41, 91
TfiI	GAWTC	2 cut(s)	202, 265
Tru1I	TTAA	2 cut(s)	207, 270
Tru9I	TTAA	2 cut(s)	207, 270
TscAI	CASTG	1 cut(s)	492
TseI	GCWGC	5 cut(s)	194, 472, 482, 505, 566
TspDTI	ATGAA	3 cut(s)	17, 278, 365
TspGWI	ACGGA	1 cut(s)	305
TspRI	CASTG	1 cut(s)	492
Tth111I	GACNNNGTC	1 cut(s)	176
Vha464I	CTTAAG	2 cut(s)	206, 269
VpaK11BI	GGWCC	1 cut(s)	112
XapI	RAATTY	1 cut(s)	137
XbaI	TCTAGA	1 cut(s)	547
XcmI	CCANNNNNNNNNTGG	1 cut(s)	252
XhoI	CTCGAG	1 cut(s)	369
XspI	CTAG	3 cut(s)	479, 548, 580

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.