FvH4_3g38790

Plant transposase (Ptta/En/Spm family)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000776
Physical Location & Seq
Forward (+)
33086188 .. 33088424
2237 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g38790.t1

Sequence Viewer

Length: 789 bp
ATGAGTGGGAGTGGCTTTGCACGCATTTTGAATCGGACAAGTACAAGGTACTTGACTGATGAGGCTGCTGCACTTTTGCTTTACTCTTTATTGCAAGGAAATGATGGTTTTGCTAGACGATCGGTTGCGAACTCCAGCAACCGTGGTAAGAAAGAGTTAGAGCACCACTCAGGGAGGAAACCTATCATTTACCGGGTGGCCGAGCTAAGGGATAAGGGTGCTTCATTACCGGTGGTTGACGTGTACCCGGTGACATACGACATCAACAAGCCTAAAGCTGTTGAGCATTATGAAAAGTTGAAGGAACAAGGTGCTATTGCCAAGACTTTGCAGAGCACTCAACACCCGGACATCCCACCGGATCAGCTACCTCCTTTGGACTGGCCAACTCAACTAAGTGTTGTGCAAAACGCTATGGGAGAAACAAAAGGGTCTTACCTTCGTGGTATTGGACGAGCAGGCGTCCTAGAGAAGAGTAGAAGGTCAACATCTTCCTCTTCATGCTCTCGACCGAATAATGAGGCGATGACAAAGATAGTGGCTGCTAGAAAGGAGGCGGCTGAGGCACAAGAGAGGGCTGACAAAGCACAAGAGAAGGCTGAAAAAGCCCAGAAGATCGCTGAGCAGTTTGTTGCAGATTATCAAGTGTTGAAGTTGCAAATGGATCAAATCATGGCTCGAATAGGGCTACAGCCTATGTGTTCACCCTCGGTCCCAAGCCAACAACCTCGAGACGACGATGATGATAGGGGCCTTGACACTTCTCAGATTAGTTTAGGAAATCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

263

Amino Acids

28.91

Weight (kDa)

8.94

Isoelectric Point (pI)

39.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 557
AclWI GGATC 2 cut(s) 369, 672
AcoI YGGCCR 2 cut(s) 198, 383
AcyI GRCGYC 1 cut(s) 462
AfaI GTAC 3 cut(s) 43, 50, 245
AfiI CCNNNNNNNGG 1 cut(s) 207
AflIII ACRYGT 1 cut(s) 240
AgeI ACCGGT 1 cut(s) 229
AgsI TTSAA 3 cut(s) 31, 301, 652
AjiI CACGTC 1 cut(s) 241
AluBI AGCT 3 cut(s) 205, 278, 367
AluI AGCT 3 cut(s) 205, 278, 367
Alw21I GWGCWC 2 cut(s) 165, 338
Alw26I GTCTC 1 cut(s) 726
AlwI GGATC 2 cut(s) 369, 672
Ama87I CYCGRG 1 cut(s) 729
AoxI GGCC 3 cut(s) 198, 383, 751
ApeKI GCWGC 3 cut(s) 65, 68, 542
AsiGI ACCGGT 1 cut(s) 229
AspS9I GGNCC 2 cut(s) 712, 751
AsuC2I CCSGG 3 cut(s) 194, 248, 347
AsuHPI GGTGA 2 cut(s) 262, 696
AvaI CYCGRG 1 cut(s) 729
AvaII GGWCC 1 cut(s) 712
BalI TGGCCA 1 cut(s) 385
Bbv12I GWGCWC 2 cut(s) 165, 338
BbvCI CCTCAGC 1 cut(s) 561
BbvI GCAGC 3 cut(s) 52, 55, 529
BccI CCATC 1 cut(s) 98
BcnI CCSGG 3 cut(s) 194, 248, 347
BcoDI GTCTC 1 cut(s) 726
BfaI CTAG 3 cut(s) 114, 467, 546
BfmI CTRYAG 1 cut(s) 689
BisI GCNGC 4 cut(s) 66, 69, 543, 558
BlpI GCTNAGC 1 cut(s) 621
BlsI GCNGC 4 cut(s) 67, 70, 544, 559
Bme1390I CCNGG 3 cut(s) 194, 248, 347
Bme18I GGWCC 1 cut(s) 712
BmeT110I CYCGRG 1 cut(s) 729
BmgBI CACGTC 1 cut(s) 241
BmgT120I GGNCC 2 cut(s) 712, 751
BmiI GGNNCC 2 cut(s) 714, 752
BmrFI CCNGG 3 cut(s) 194, 248, 347
BplI GAGNNNNNCTC 2 cut(s) 152, 184
BpmI CTGGAG 1 cut(s) 118
Bpu10I CCTNAGC 2 cut(s) 206, 561
Bpu1102I GCTNAGC 1 cut(s) 621
BpuMI CCSGG 3 cut(s) 194, 248, 347
BsaHI GRCGYC 1 cut(s) 462
BsaJI CCNNGG 2 cut(s) 142, 708
BsaWI WCCGGW 2 cut(s) 229, 358
Bsc4I CCNNNNNNNGG 1 cut(s) 207
Bse118I RCCGGY 1 cut(s) 229
Bse1I ACTGG 1 cut(s) 386
BseDI CCNNGG 2 cut(s) 142, 708
BseGI GGATG 1 cut(s) 351
BseLI CCNNNNNNNGG 1 cut(s) 207
BseMII CTCAG 4 cut(s) 183, 552, 612, 779
BseNI ACTGG 1 cut(s) 386
BseXI GCAGC 3 cut(s) 52, 55, 529
BsgI GTGCAG 1 cut(s) 54
Bsh1285I CGRYCG 2 cut(s) 122, 512
BshFI GGCC 3 cut(s) 200, 385, 753
BshTI ACCGGT 1 cut(s) 229
BsiEI CGRYCG 2 cut(s) 122, 512
BsiHKAI GWGCWC 2 cut(s) 165, 338
BsiHKCI CYCGRG 1 cut(s) 729
BsiSI CCGG 5 cut(s) 193, 230, 248, 347, 359
BslFI GGGAC 1 cut(s) 698
BslI CCNNNNNNNGG 1 cut(s) 207
BsmAI GTCTC 1 cut(s) 726
BsmBI CGTCTC 1 cut(s) 726
BsmFI GGGAC 1 cut(s) 698
BsnI GGCC 3 cut(s) 200, 385, 753
BsoBI CYCGRG 1 cut(s) 729
Bsp1286I GDGCHC 2 cut(s) 165, 338
Bsp143I GATC 4 cut(s) 119, 361, 615, 664
Bsp1720I GCTNAGC 1 cut(s) 621
BspACI CCGC 1 cut(s) 557
BspANI GGCC 3 cut(s) 200, 385, 753
BspCNI CTCAG 4 cut(s) 182, 553, 613, 778
BspLI GGNNCC 2 cut(s) 714, 752
BspPI GGATC 2 cut(s) 369, 672
BsrFI RCCGGY 1 cut(s) 229
BsrI ACTGG 1 cut(s) 386
BssAI RCCGGY 1 cut(s) 229
BssECI CCNNGG 2 cut(s) 142, 708
BssMI GATC 4 cut(s) 119, 361, 615, 664
BssNI GRCGYC 1 cut(s) 462
Bst4CI ACNGT 1 cut(s) 143
Bst6I CTCTTC 2 cut(s) 467, 502
BstACI GRCGYC 1 cut(s) 462
BstC8I GCNNGC 2 cut(s) 22, 460
BstDEI CTNAG 6 cut(s) 169, 206, 395, 561, 621, 765
BstDSI CCRYGG 1 cut(s) 142
BstF5I GGATG 1 cut(s) 351
BstKTI GATC 4 cut(s) 122, 364, 618, 667
BstMAI GTCTC 1 cut(s) 726
BstMBI GATC 4 cut(s) 119, 361, 615, 664
BstMCI CGRYCG 2 cut(s) 122, 512
BstMWI GCNNNNNNNGC 4 cut(s) 21, 563, 584, 605
BstSCI CCNGG 3 cut(s) 192, 246, 345
BstSFI CTRYAG 1 cut(s) 689
BstV1I GCAGC 3 cut(s) 52, 55, 529
BsuRI GGCC 3 cut(s) 200, 385, 753
BtgI CCRYGG 1 cut(s) 142
BtgZI GCGATG 1 cut(s) 539
BtrI CACGTC 1 cut(s) 241
BtsCI GGATG 1 cut(s) 351
Cac8I GCNNGC 2 cut(s) 22, 460
Cfr10I RCCGGY 1 cut(s) 229
Cfr13I GGNCC 2 cut(s) 712, 751
CseI GACGC 1 cut(s) 451
Csp6I GTAC 3 cut(s) 42, 49, 244
CspAI ACCGGT 1 cut(s) 229
CspCI CAANNNNNGTGG 2 cut(s) 519, 554
CviAII CATG 2 cut(s) 501, 673
CviQI GTAC 3 cut(s) 42, 49, 244
DdeI CTNAG 6 cut(s) 169, 206, 395, 561, 621, 765
DpnI GATC 4 cut(s) 121, 363, 617, 666
DpnII GATC 4 cut(s) 119, 361, 615, 664
EaeI YGGCCR 2 cut(s) 198, 383
Eam1104I CTCTTC 2 cut(s) 467, 502
EarI CTCTTC 2 cut(s) 467, 502
Eco47I GGWCC 1 cut(s) 712
Eco88I CYCGRG 1 cut(s) 729
EcoO109I RGGNCCY 1 cut(s) 751
Esp3I CGTCTC 1 cut(s) 726
FaeI CATG 2 cut(s) 504, 676
FaiI YATR 6 cut(s) 256, 291, 416, 502, 674, 698
FaqI GGGAC 1 cut(s) 698
FatI CATG 2 cut(s) 500, 672
Fnu4HI GCNGC 4 cut(s) 66, 69, 543, 558
FokI GGATG 1 cut(s) 338
Fsp4HI GCNGC 4 cut(s) 66, 69, 543, 558
FspBI CTAG 3 cut(s) 114, 467, 546
GluI GCNGC 4 cut(s) 66, 69, 543, 558
GsuI CTGGAG 1 cut(s) 118
HaeIII GGCC 3 cut(s) 200, 385, 753
HapII CCGG 5 cut(s) 193, 230, 248, 347, 359
HgaI GACGC 1 cut(s) 451
Hin1I GRCGYC 1 cut(s) 462
Hin1II CATG 2 cut(s) 504, 676
HincII GTYRAC 2 cut(s) 238, 486
HindII GTYRAC 2 cut(s) 238, 486
HinfI GANTC 1 cut(s) 31
HpaII CCGG 5 cut(s) 193, 230, 248, 347, 359
HphI GGTGA 2 cut(s) 262, 696
Hpy166II GTNNAC 4 cut(s) 238, 244, 486, 704
Hpy188I TCNGA 2 cut(s) 36, 768
Hpy188III TCNNGA 2 cut(s) 507, 731
Hpy8I GTNNAC 4 cut(s) 238, 244, 486, 704
Hpy99I CGWCG 1 cut(s) 740
HpyAV CCTTC 4 cut(s) 295, 449, 474, 589
HpyCH4III ACNGT 1 cut(s) 143
HpyCH4IV ACGT 1 cut(s) 240
HpyCH4V TGCA 7 cut(s) 20, 71, 94, 331, 406, 635, 658
HpyF10VI GCNNNNNNNGC 4 cut(s) 21, 563, 584, 605
HpyF3I CTNAG 6 cut(s) 169, 206, 395, 561, 621, 765
HpySE526I ACGT 1 cut(s) 240
Hsp92I GRCGYC 1 cut(s) 462
Hsp92II CATG 2 cut(s) 504, 676
Kzo9I GATC 4 cut(s) 119, 361, 615, 664
Lsp1109I GCAGC 3 cut(s) 52, 55, 529
MaeI CTAG 3 cut(s) 114, 467, 546
MaeII ACGT 1 cut(s) 240
MaeIII GTNAC 1 cut(s) 250
MalI GATC 4 cut(s) 121, 363, 617, 666
MboI GATC 4 cut(s) 119, 361, 615, 664
MboII GAAGA 4 cut(s) 483, 484, 489, 625
MhlI GDGCHC 2 cut(s) 165, 338
MlsI TGGCCA 1 cut(s) 385
MluNI TGGCCA 1 cut(s) 385
Mox20I TGGCCA 1 cut(s) 385
MscI TGGCCA 1 cut(s) 385
Msp20I TGGCCA 1 cut(s) 385
MspI CCGG 5 cut(s) 193, 230, 248, 347, 359
MspR9I CCNGG 3 cut(s) 194, 248, 347
MwoI GCNNNNNNNGC 4 cut(s) 21, 563, 584, 605
NciI CCSGG 3 cut(s) 194, 248, 347
NdeII GATC 4 cut(s) 119, 361, 615, 664
NlaIII CATG 2 cut(s) 504, 676
NlaIV GGNNCC 2 cut(s) 714, 752
NmeAIII GCCGAG 1 cut(s) 226
NmuCI GTSAC 1 cut(s) 250
PaeR7I CTCGAG 1 cut(s) 729
PfeI GAWTC 1 cut(s) 31
PinAI ACCGGT 1 cut(s) 229
PkrI GCNGC 4 cut(s) 67, 70, 544, 559
Ple19I CGATCG 1 cut(s) 122
PspN4I GGNNCC 2 cut(s) 714, 752
PspPI GGNCC 2 cut(s) 712, 751
PvuI CGATCG 1 cut(s) 122
RsaI GTAC 3 cut(s) 43, 50, 245
RsaNI GTAC 3 cut(s) 42, 49, 244
SatI GCNGC 4 cut(s) 66, 69, 543, 558
Sau3AI GATC 4 cut(s) 119, 361, 615, 664
Sau96I GGNCC 2 cut(s) 712, 751
ScrFI CCNGG 3 cut(s) 194, 248, 347
SduI GDGCHC 2 cut(s) 165, 338
SfcI CTRYAG 1 cut(s) 689
Sfr274I CTCGAG 1 cut(s) 729
SinI GGWCC 1 cut(s) 712
SlaI CTCGAG 1 cut(s) 729
SmlI CTYRAG 1 cut(s) 729
SmoI CTYRAG 1 cut(s) 729
SsiI CCGC 1 cut(s) 557
SspMI CTAG 3 cut(s) 114, 467, 546
StyD4I CCNGG 3 cut(s) 192, 246, 345
TaaI ACNGT 1 cut(s) 143
TaiI ACGT 1 cut(s) 243
TaqI TCGA 3 cut(s) 508, 679, 730
TaqII GACCGA 2 cut(s) 526, 700
TatI WGTACW 1 cut(s) 41
TauI GCSGC 1 cut(s) 560
TfiI GAWTC 1 cut(s) 31
TseFI GTSAC 1 cut(s) 250
TseI GCWGC 3 cut(s) 65, 68, 542
Tsp45I GTSAC 1 cut(s) 250
TspDTI ATGAA 3 cut(s) 213, 306, 489
VpaK11BI GGWCC 1 cut(s) 712
XhoI CTCGAG 1 cut(s) 729
XspI CTAG 3 cut(s) 114, 467, 546
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.