FvH4_4g10233

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000776
Physical Location & Seq
Forward (+)
13466820 .. 13467122
303 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g10233.t1

Sequence Viewer

Length: 303 bp
ATGCAGAAAGAGGCCTCTAAATTGAAAAATGAGCAGAAGAATGCAAACCTTGATGTCCCGGAGGGTGAGCTCCCACCTTTGGAGTGGTCAATAAACATTAAGGTGCTTGAAGTAGGAGTTGGTAGAAGAGCCGGGAAGGAGATTCGTGGTCTTGGAAGAGCAGGTGTACGAGAGTCATCATCTTCTGCTCCATGTTCTCGAGTTTATGAGGTGGAGGACAGATTACATATTGCTGAGGAGAGAGCCGAAAAAGCCGAGGCGGTTGCGCAGAACCTTAGTGAAGAGATGGCATTGGTGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

101

Amino Acids

11.03

Weight (kDa)

5.53

Isoelectric Point (pI)

45.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 152
Acc16I TGCGCA 1 cut(s) 267
Acc36I ACCTGC 1 cut(s) 152
AciI CCGC 1 cut(s) 260
AfaI GTAC 1 cut(s) 168
AfiI CCNNNNNNNGG 1 cut(s) 79
AgsI TTSAA 2 cut(s) 25, 110
AjuI GAANNNNNNNTTGG 2 cut(s) 102, 134
AluBI AGCT 1 cut(s) 70
AluI AGCT 1 cut(s) 70
Alw21I GWGCWC 1 cut(s) 72
Ama87I CYCGRG 1 cut(s) 198
AoxI GGCC 1 cut(s) 12
AspLEI GCGC 1 cut(s) 268
AsuC2I CCSGG 2 cut(s) 59, 133
AsuHPI GGTGA 1 cut(s) 77
AvaI CYCGRG 1 cut(s) 198
BanII GRGCYC 1 cut(s) 72
Bbv12I GWGCWC 1 cut(s) 72
BbvCI CCTCAGC 1 cut(s) 234
BccI CCATC 1 cut(s) 280
BcgI CGANNNNNNTGC 2 cut(s) 245, 279
BcnI CCSGG 2 cut(s) 59, 133
BfuAI ACCTGC 1 cut(s) 152
Bme1390I CCNGG 2 cut(s) 59, 133
BmeT110I CYCGRG 1 cut(s) 198
BmrFI CCNGG 2 cut(s) 59, 133
Bpu10I CCTNAGC 1 cut(s) 234
BpuMI CCSGG 2 cut(s) 59, 133
BsaJI CCNNGG 1 cut(s) 255
Bsc4I CCNNNNNNNGG 1 cut(s) 79
BseDI CCNNGG 1 cut(s) 255
BseLI CCNNNNNNNGG 1 cut(s) 79
BseMII CTCAG 1 cut(s) 225
BseRI GAGGAG 1 cut(s) 251
BshFI GGCC 1 cut(s) 14
BsiHKAI GWGCWC 1 cut(s) 72
BsiHKCI CYCGRG 1 cut(s) 198
BsiSI CCGG 2 cut(s) 59, 132
BslFI GGGAC 1 cut(s) 41
BslI CCNNNNNNNGG 1 cut(s) 79
BsmFI GGGAC 1 cut(s) 41
BsmI GAATGC 1 cut(s) 46
BsnI GGCC 1 cut(s) 14
BsoBI CYCGRG 1 cut(s) 198
Bsp1286I GDGCHC 1 cut(s) 72
BspACI CCGC 1 cut(s) 260
BspANI GGCC 1 cut(s) 14
BspCNI CTCAG 1 cut(s) 226
BspMI ACCTGC 1 cut(s) 152
BspQI GCTCTTC 2 cut(s) 121, 151
BssECI CCNNGG 1 cut(s) 255
Bst6I CTCTTC 3 cut(s) 121, 151, 276
BstDEI CTNAG 2 cut(s) 234, 275
BstHHI GCGC 1 cut(s) 268
BstMWI GCNNNNNNNGC 1 cut(s) 251
BstSCI CCNGG 2 cut(s) 57, 131
BsuRI GGCC 1 cut(s) 14
BveI ACCTGC 1 cut(s) 152
CfoI GCGC 1 cut(s) 268
Csp6I GTAC 1 cut(s) 167
CviAII CATG 1 cut(s) 192
CviJI RGCY 5 cut(s) 14, 70, 131, 245, 254
CviKI_1 RGCY 5 cut(s) 14, 70, 131, 245, 254
CviQI GTAC 1 cut(s) 167
DdeI CTNAG 2 cut(s) 234, 275
Eam1104I CTCTTC 3 cut(s) 121, 151, 276
EarI CTCTTC 3 cut(s) 121, 151, 276
Ecl136II GAGCTC 1 cut(s) 70
Eco147I AGGCCT 1 cut(s) 14
Eco24I GRGCYC 1 cut(s) 72
Eco53kI GAGCTC 1 cut(s) 70
Eco88I CYCGRG 1 cut(s) 198
EcoICRI GAGCTC 1 cut(s) 70
EcoT38I GRGCYC 1 cut(s) 72
FaeI CATG 1 cut(s) 195
FaiI YATR 3 cut(s) 193, 207, 228
FaqI GGGAC 1 cut(s) 41
FatI CATG 1 cut(s) 191
FriOI GRGCYC 1 cut(s) 72
FspI TGCGCA 1 cut(s) 267
GlaI GCGC 1 cut(s) 267
HaeIII GGCC 1 cut(s) 14
HapII CCGG 2 cut(s) 59, 132
HhaI GCGC 1 cut(s) 268
Hin1II CATG 1 cut(s) 195
Hin6I GCGC 1 cut(s) 266
HinP1I GCGC 1 cut(s) 266
HinfI GANTC 2 cut(s) 142, 173
HpaII CCGG 2 cut(s) 59, 132
HphI GGTGA 1 cut(s) 77
Hpy166II GTNNAC 1 cut(s) 167
Hpy188III TCNNGA 1 cut(s) 198
Hpy8I GTNNAC 1 cut(s) 167
HpyAV CCTTC 1 cut(s) 130
HpyCH4V TGCA 2 cut(s) 4, 44
HpyF10VI GCNNNNNNNGC 1 cut(s) 251
HpyF3I CTNAG 2 cut(s) 234, 275
Hsp92II CATG 1 cut(s) 195
HspAI GCGC 1 cut(s) 266
LguI GCTCTTC 2 cut(s) 121, 151
LmnI GCTCC 2 cut(s) 75, 193
LpnPI CCDG 3 cut(s) 72, 145, 147
MboII GAAGA 5 cut(s) 49, 138, 168, 174, 293
MhlI GDGCHC 1 cut(s) 72
MluCI AATT 1 cut(s) 20
MlyI GAGTC 1 cut(s) 182
MnlI CCTC 7 cut(s) 4, 25, 55, 202, 208, 229, 250
MseI TTAA 1 cut(s) 99
MslI CAYNNNNRTG 1 cut(s) 101
MspI CCGG 2 cut(s) 59, 132
MspR9I CCNGG 2 cut(s) 59, 133
Mva1269I GAATGC 1 cut(s) 46
MwoI GCNNNNNNNGC 1 cut(s) 251
NciI CCSGG 2 cut(s) 59, 133
NlaIII CATG 1 cut(s) 195
NmeAIII GCCGAG 1 cut(s) 280
NsbI TGCGCA 1 cut(s) 267
PaeR7I CTCGAG 1 cut(s) 198
PaqCI CACCTGC 1 cut(s) 152
PceI AGGCCT 1 cut(s) 14
PciSI GCTCTTC 2 cut(s) 121, 151
PctI GAATGC 1 cut(s) 46
PfeI GAWTC 1 cut(s) 142
PfoI TCCNGGA 1 cut(s) 57
PleI GAGTC 1 cut(s) 181
PpsI GAGTC 1 cut(s) 181
Psp124BI GAGCTC 1 cut(s) 72
RsaI GTAC 1 cut(s) 168
RsaNI GTAC 1 cut(s) 167
RseI CAYNNNNRTG 1 cut(s) 101
SacI GAGCTC 1 cut(s) 72
SapI GCTCTTC 2 cut(s) 121, 151
SaqAI TTAA 1 cut(s) 99
SchI GAGTC 1 cut(s) 182
ScrFI CCNGG 2 cut(s) 59, 133
SduI GDGCHC 1 cut(s) 72
SetI ASST 7 cut(s) 51, 72, 79, 105, 166, 213, 276
Sfr274I CTCGAG 1 cut(s) 198
SlaI CTCGAG 1 cut(s) 198
SmiMI CAYNNNNRTG 1 cut(s) 101
SmlI CTYRAG 1 cut(s) 198
SmoI CTYRAG 1 cut(s) 198
Sse9I AATT 1 cut(s) 20
SseBI AGGCCT 1 cut(s) 14
SsiI CCGC 1 cut(s) 260
SstI GAGCTC 1 cut(s) 72
StuI AGGCCT 1 cut(s) 14
StyD4I CCNGG 2 cut(s) 57, 131
TaqI TCGA 1 cut(s) 199
TasI AATT 1 cut(s) 20
TfiI GAWTC 1 cut(s) 142
Tru1I TTAA 1 cut(s) 99
Tru9I TTAA 1 cut(s) 99
XcmI CCANNNNNNNNNTGG 1 cut(s) 81
XhoI CTCGAG 1 cut(s) 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.