Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0000776

Physical Location & Seq

Genomic Coordinates Forward (+)

24106563 .. 24112529

Gene Structure 5967 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g30710.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGAAGATCGACTTGGACTTTGATTGGGAGGTTATTGATGGACCTCGTAATTCTGATGTATGCAGCCTGTTTGTCAATAGTATTGGAAGCATTATACGGAAAAGGGTGGCAATGAAGAAGGAATCATGGTATGATTTAGACAAAGAGGAGAGGAAGAAGCTTTTTGACGGTCTCACTTGCTTTTTTATCATTGATTTTAATGATATAAAAGCTATTAAATGGATCAATAAAAAGGCGGCAAGTGTATTCCGTGAATGGAAGCACGACTTGTCCGAGATTCACAAGCTTGGGGGGAGAGATGTGATTCTGGAAGAGCTTTTGCATAGGCGGGATGAGTGGAAGTGGCTTTGCACGCATTTTGATTCGGACAAGTACAAGAGACAATCGATTGCCAACTCCAGCAACCGTGGCAAGAAGGAGTTGGAGCACCACTCAGGGAGGAAACCTATCATTTACCGGGTGGCCGAGCTTAGGGATAAGGGTGCTTCATTACCGGTGGTTAACGTGTACCCGGTGACATACGATATCAACCAGCCTAAAGCTGCTGAGCATTATGAAAAGTTGAAGGAACAAGGTGCTATTGCCAAGACTTTGCAGAGCATTCAACACCCGGACATCCCACCGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transposase_24

Protein Analysis

210

Amino Acids

24.49

Weight (kDa)

8.61

Isoelectric Point (pI)

37.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transposase_24	PF03004	111 - 190	2.4e-06	Plant transposase (Ptta/En/Spm family)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000776)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15161 FvH4_1g18892 FvH4_1g18893 FvH4_1g20162 FvH4_1g26653 FvH4_1g29050 FvH4_1g29090 FvH4_1g29091 FvH4_2g00890 FvH4_2g00890 FvH4_2g14380 FvH4_2g17540 FvH4_2g19090 FvH4_2g19770 FvH4_2g30343 FvH4_2g30344 FvH4_2g30380 FvH4_2g34010 FvH4_3g18731 FvH4_3g21360 FvH4_3g23880 FvH4_3g26330 FvH4_3g26702 FvH4_3g30710 FvH4_3g30880 FvH4_3g31911 FvH4_3g32572 FvH4_3g38790 FvH4_3g45880 FvH4_4g03280 FvH4_4g08270 FvH4_4g08610 FvH4_4g08911 FvH4_4g10030 FvH4_4g10220 FvH4_4g10221 FvH4_4g10232 FvH4_4g10233 FvH4_4g10364 FvH4_4g14460 FvH4_4g16210 FvH4_4g27150 FvH4_5g06880 FvH4_5g13180 FvH4_5g19450 FvH4_5g20620 FvH4_5g22931 FvH4_5g24202 FvH4_5g24970 FvH4_5g31450 FvH4_5g31660 FvH4_5g32550 FvH4_6g06811 FvH4_6g17172 FvH4_6g17190 FvH4_6g18010 FvH4_6g21800 FvH4_6g21871 FvH4_6g23101 FvH4_6g23360 FvH4_6g24310 FvH4_6g30100 FvH4_6g31520 FvH4_6g31530 FvH4_6g34820 FvH4_6g35510 FvH4_6g40350 FvH4_6g40360 FvH4_7g09590 FvH4_7g16000

Species

Orthologous Gene IDs

fragaria_vesca

FvH4_1g15161 FvH4_1g18892 FvH4_1g18893 FvH4_1g20162 FvH4_1g26653 FvH4_1g29050 FvH4_1g29090 FvH4_1g29091 FvH4_2g00890 FvH4_2g00890 FvH4_2g14380 FvH4_2g17540 FvH4_2g19090 FvH4_2g19770 FvH4_2g30343 FvH4_2g30344 FvH4_2g30380 FvH4_2g34010 FvH4_3g18731 FvH4_3g21360 FvH4_3g23880 FvH4_3g26330 FvH4_3g26702 FvH4_3g30710 FvH4_3g30880 FvH4_3g31911 FvH4_3g32572 FvH4_3g38790 FvH4_3g45880 FvH4_4g03280 FvH4_4g08270 FvH4_4g08610 FvH4_4g08911 FvH4_4g10030 FvH4_4g10220 FvH4_4g10221 FvH4_4g10232 FvH4_4g10233 FvH4_4g10364 FvH4_4g14460 FvH4_4g16210 FvH4_4g27150 FvH4_5g06880 FvH4_5g13180 FvH4_5g19450 FvH4_5g20620 FvH4_5g22931 FvH4_5g24202 FvH4_5g24970 FvH4_5g31450 FvH4_5g31660 FvH4_5g32550 FvH4_6g06811 FvH4_6g17172 FvH4_6g17190 FvH4_6g18010 FvH4_6g21800 FvH4_6g21871 FvH4_6g23101 FvH4_6g23360 FvH4_6g24310 FvH4_6g30100 FvH4_6g31520 FvH4_6g31530 FvH4_6g34820 FvH4_6g35510 FvH4_6g40350 FvH4_6g40360 FvH4_7g09590 FvH4_7g16000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	236, 328
AclWI	GGATC	1 cut(s)	230
AcoI	YGGCCR	1 cut(s)	462
AfaI	GTAC	2 cut(s)	374, 509
AfiI	CCNNNNNNNGG	1 cut(s)	471
AflIII	ACRYGT	1 cut(s)	504
AgeI	ACCGGT	1 cut(s)	493
AgsI	TTSAA	2 cut(s)	565, 605
AjuI	GAANNNNNNNTTGG	1 cut(s)	28
AluBI	AGCT	6 cut(s)	160, 212, 286, 316, 469, 542
AluI	AGCT	6 cut(s)	160, 212, 286, 316, 469, 542
Alw21I	GWGCWC	1 cut(s)	429
Alw26I	GTCTC	2 cut(s)	176, 373
AlwI	GGATC	1 cut(s)	230
AoxI	GGCC	1 cut(s)	462
ApeKI	GCWGC	2 cut(s)	63, 542
ArsI	GACNNNNNNTTYG	1 cut(s)	34
AsiGI	ACCGGT	1 cut(s)	493
AspS9I	GGNCC	1 cut(s)	41
AsuC2I	CCSGG	3 cut(s)	458, 512, 611
AsuHPI	GGTGA	1 cut(s)	526
AvaII	GGWCC	1 cut(s)	41
Bbv12I	GWGCWC	1 cut(s)	429
BbvI	GCAGC	2 cut(s)	75, 529
BccI	CCATC	1 cut(s)	32
BcnI	CCSGG	3 cut(s)	458, 512, 611
BcoDI	GTCTC	2 cut(s)	176, 373
BisI	GCNGC	3 cut(s)	64, 237, 543
BlpI	GCTNAGC	1 cut(s)	546
BlsI	GCNGC	3 cut(s)	65, 238, 544
Bme1390I	CCNGG	3 cut(s)	458, 512, 611
Bme18I	GGWCC	1 cut(s)	41
BmgT120I	GGNCC	1 cut(s)	41
BmrFI	CCNGG	3 cut(s)	458, 512, 611
BplI	GAGNNNNNCTC	2 cut(s)	416, 448
BpmI	CTGGAG	1 cut(s)	382
Bpu10I	CCTNAGC	1 cut(s)	470
Bpu1102I	GCTNAGC	1 cut(s)	546
BpuMI	CCSGG	3 cut(s)	458, 512, 611
Bsa29I	ATCGAT	1 cut(s)	386
BsaI	GGTCTC	1 cut(s)	176
BsaJI	CCNNGG	1 cut(s)	406
BsaWI	WCCGGW	2 cut(s)	493, 622
Bsc4I	CCNNNNNNNGG	1 cut(s)	471
Bse118I	RCCGGY	1 cut(s)	493
Bse3DI	GCAATG	1 cut(s)	117
BseCI	ATCGAT	1 cut(s)	386
BseDI	CCNNGG	1 cut(s)	406
BseGI	GGATG	2 cut(s)	337, 615
BseLI	CCNNNNNNNGG	1 cut(s)	471
BseMI	GCAATG	1 cut(s)	117
BseMII	CTCAG	2 cut(s)	447, 537
BseRI	GAGGAG	1 cut(s)	161
BseXI	GCAGC	2 cut(s)	75, 529
BshFI	GGCC	1 cut(s)	464
BshTI	ACCGGT	1 cut(s)	493
BshVI	ATCGAT	1 cut(s)	386
BsiHKAI	GWGCWC	1 cut(s)	429
BsiSI	CCGG	5 cut(s)	457, 494, 512, 611, 623
BslI	CCNNNNNNNGG	1 cut(s)	471
BsmAI	GTCTC	2 cut(s)	176, 373
BsmI	GAATGC	1 cut(s)	600
BsnI	GGCC	1 cut(s)	464
Bso31I	GGTCTC	1 cut(s)	176
Bsp1286I	GDGCHC	1 cut(s)	429
Bsp143I	GATC	2 cut(s)	6, 222
Bsp1720I	GCTNAGC	1 cut(s)	546
BspACI	CCGC	2 cut(s)	236, 328
BspANI	GGCC	1 cut(s)	464
BspCNI	CTCAG	2 cut(s)	446, 538
BspDI	ATCGAT	1 cut(s)	386
BspPI	GGATC	1 cut(s)	230
BspQI	GCTCTTC	1 cut(s)	306
BspTNI	GGTCTC	1 cut(s)	176
BsrDI	GCAATG	1 cut(s)	117
BsrFI	RCCGGY	1 cut(s)	493
BssAI	RCCGGY	1 cut(s)	493
BssECI	CCNNGG	1 cut(s)	406
BssMI	GATC	2 cut(s)	6, 222
Bst4CI	ACNGT	2 cut(s)	170, 407
Bst6I	CTCTTC	1 cut(s)	306
BstC8I	GCNNGC	1 cut(s)	353
BstDEI	CTNAG	3 cut(s)	433, 470, 546
BstDSI	CCRYGG	1 cut(s)	406
BstF5I	GGATG	2 cut(s)	337, 615
BstKTI	GATC	2 cut(s)	9, 225
BstMAI	GTCTC	2 cut(s)	176, 373
BstMBI	GATC	2 cut(s)	6, 222
BstMWI	GCNNNNNNNGC	2 cut(s)	352, 408
BstSCI	CCNGG	3 cut(s)	456, 510, 609
BstV1I	GCAGC	2 cut(s)	75, 529
Bsu15I	ATCGAT	1 cut(s)	386
BsuRI	GGCC	1 cut(s)	464
BsuTUI	ATCGAT	1 cut(s)	386
BtgI	CCRYGG	1 cut(s)	406
BtsCI	GGATG	2 cut(s)	337, 615
Cac8I	GCNNGC	1 cut(s)	353
Cfr10I	RCCGGY	1 cut(s)	493
Cfr13I	GGNCC	1 cut(s)	41
ClaI	ATCGAT	1 cut(s)	386
Csp6I	GTAC	2 cut(s)	373, 508
CspAI	ACCGGT	1 cut(s)	493
CviAII	CATG	1 cut(s)	126
CviQI	GTAC	2 cut(s)	373, 508
DdeI	CTNAG	3 cut(s)	433, 470, 546
DpnI	GATC	2 cut(s)	8, 224
DpnII	GATC	2 cut(s)	6, 222
EaeI	YGGCCR	1 cut(s)	462
Eam1104I	CTCTTC	1 cut(s)	306
EarI	CTCTTC	1 cut(s)	306
Eco31I	GGTCTC	1 cut(s)	176
Eco32I	GATATC	1 cut(s)	526
Eco47I	GGWCC	1 cut(s)	41
EcoRV	GATATC	1 cut(s)	526
FaeI	CATG	1 cut(s)	129
FaiI	YATR	8 cut(s)	61, 95, 127, 132, 206, 324, 520, 555
FalI	AAGNNNNNCTT	3 cut(s)	28, 251, 283
FatI	CATG	1 cut(s)	125
FauI	CCCGC	1 cut(s)	321
Fnu4HI	GCNGC	3 cut(s)	64, 237, 543
FokI	GGATG	2 cut(s)	344, 602
Fsp4HI	GCNGC	3 cut(s)	64, 237, 543
GluI	GCNGC	3 cut(s)	64, 237, 543
GsuI	CTGGAG	1 cut(s)	382
HaeIII	GGCC	1 cut(s)	464
HapII	CCGG	5 cut(s)	457, 494, 512, 611, 623
Hin1II	CATG	1 cut(s)	129
HincII	GTYRAC	1 cut(s)	502
HindII	GTYRAC	1 cut(s)	502
HindIII	AAGCTT	2 cut(s)	158, 284
HinfI	GANTC	4 cut(s)	122, 277, 304, 362
HpaI	GTTAAC	1 cut(s)	502
HpaII	CCGG	5 cut(s)	457, 494, 512, 611, 623
HphI	GGTGA	1 cut(s)	526
Hpy166II	GTNNAC	2 cut(s)	502, 508
Hpy188I	TCNGA	3 cut(s)	55, 274, 367
Hpy188III	TCNNGA	1 cut(s)	308
Hpy8I	GTNNAC	2 cut(s)	502, 508
HpyAV	CCTTC	3 cut(s)	112, 409, 559
HpyCH4III	ACNGT	2 cut(s)	170, 407
HpyCH4IV	ACGT	1 cut(s)	504
HpyCH4V	TGCA	4 cut(s)	63, 322, 351, 595
HpyF10VI	GCNNNNNNNGC	2 cut(s)	352, 408
HpyF3I	CTNAG	3 cut(s)	433, 470, 546
HpySE526I	ACGT	1 cut(s)	504
Hsp92II	CATG	1 cut(s)	129
KspAI	GTTAAC	1 cut(s)	502
Kzo9I	GATC	2 cut(s)	6, 222
LguI	GCTCTTC	1 cut(s)	306
LmnI	GCTCC	1 cut(s)	424
LpnPI	CCDG	9 cut(s)	80, 293, 412, 420, 470, 507, 525, 545, 624
Lsp1109I	GCAGC	2 cut(s)	75, 529
MaeII	ACGT	1 cut(s)	504
MaeIII	GTNAC	1 cut(s)	514
MalI	GATC	2 cut(s)	8, 224
MboI	GATC	2 cut(s)	6, 222
MboII	GAAGA	4 cut(s)	16, 127, 166, 323
MhlI	GDGCHC	1 cut(s)	429
MluCI	AATT	1 cut(s)	49
MmeI	TCCRAC	1 cut(s)	402
MnlI	CCTC	5 cut(s)	22, 54, 139, 144, 432
MseI	TTAA	3 cut(s)	198, 216, 501
MspI	CCGG	5 cut(s)	457, 494, 512, 611, 623
MspR9I	CCNGG	3 cut(s)	458, 512, 611
Mva1269I	GAATGC	1 cut(s)	600
MwoI	GCNNNNNNNGC	2 cut(s)	352, 408
NciI	CCSGG	3 cut(s)	458, 512, 611
NdeII	GATC	2 cut(s)	6, 222
NlaIII	CATG	1 cut(s)	129
NmeAIII	GCCGAG	1 cut(s)	490
NmuCI	GTSAC	1 cut(s)	514
PciSI	GCTCTTC	1 cut(s)	306
PcsI	WCGNNNNNNNCGW	1 cut(s)	270
PctI	GAATGC	1 cut(s)	600
PfeI	GAWTC	4 cut(s)	122, 277, 304, 362
PinAI	ACCGGT	1 cut(s)	493
PkrI	GCNGC	3 cut(s)	65, 238, 544
PspPI	GGNCC	1 cut(s)	41
RsaI	GTAC	2 cut(s)	374, 509
RsaNI	GTAC	2 cut(s)	373, 508
SapI	GCTCTTC	1 cut(s)	306
SaqAI	TTAA	3 cut(s)	198, 216, 501
SatI	GCNGC	3 cut(s)	64, 237, 543
Sau3AI	GATC	2 cut(s)	6, 222
Sau96I	GGNCC	1 cut(s)	41
ScrFI	CCNGG	3 cut(s)	458, 512, 611
SduI	GDGCHC	1 cut(s)	429
SinI	GGWCC	1 cut(s)	41
Sse9I	AATT	1 cut(s)	49
SsiI	CCGC	2 cut(s)	236, 328
StyD4I	CCNGG	3 cut(s)	456, 510, 609
TaaI	ACNGT	2 cut(s)	170, 407
TaiI	ACGT	1 cut(s)	507
TaqI	TCGA	2 cut(s)	9, 386
TasI	AATT	1 cut(s)	49
TatI	WGTACW	1 cut(s)	372
TauI	GCSGC	1 cut(s)	239
TfiI	GAWTC	4 cut(s)	122, 277, 304, 362
Tru1I	TTAA	3 cut(s)	198, 216, 501
Tru9I	TTAA	3 cut(s)	198, 216, 501
TseFI	GTSAC	1 cut(s)	514
TseI	GCWGC	2 cut(s)	63, 542
Tsp45I	GTSAC	1 cut(s)	514
TspDTI	ATGAA	4 cut(s)	17, 128, 477, 570
TspGWI	ACGGA	2 cut(s)	112, 239
VpaK11BI	GGWCC	1 cut(s)	41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.