Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0000776

Physical Location & Seq

Genomic Coordinates Forward (+)

4057936 .. 4059182

Gene Structure 1247 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g06880.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGAACTACATACTTTGTGATTGGCAGACACGATCGGCGGCTAACAAGACCAACCGTGGTAAGAAAGAGTCGGAGCACCACACGGGGCGGCTACCTATCATCTACAGGGTGGTCCACCACAAAGAGAAGGGTAAGGAATTTCCTGTTATCCCAGCTTACACAGAGACGTATGACACAGTCAACGACCCTAAAGCTGCCAAGAATCTTGAGGAAATGCAGAAAGAGGCAACTGAATTGAAAAATGCACAGAAGAATGCAAACCCTGACATCCCGGAGGCTGAGCTCCCACCTTTGGAGTGGTCAATGAATCTTAAGGTGTTTGAAGCAGGAGTCGGCAGAAGAGCCGGGAAAGAGATCCGTGGTCTTGGAAGAGCAGGTGGCCGACAGTTATCATCTTCCACTCCACGTTCTCGAGTTCATGAGGTGGAGGAGAGATTACATATTGCTGAGGAGAGGGCCGAAAAAGCTGAGGCGGTTGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transposase_24

Protein Analysis

161

Amino Acids

18.08

Weight (kDa)

8.63

Isoelectric Point (pI)

41.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000776)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15161 FvH4_1g18892 FvH4_1g18893 FvH4_1g20162 FvH4_1g26653 FvH4_1g29050 FvH4_1g29090 FvH4_1g29091 FvH4_2g00890 FvH4_2g00890 FvH4_2g14380 FvH4_2g17540 FvH4_2g19090 FvH4_2g19770 FvH4_2g30343 FvH4_2g30344 FvH4_2g30380 FvH4_2g34010 FvH4_3g18731 FvH4_3g21360 FvH4_3g23880 FvH4_3g26330 FvH4_3g26702 FvH4_3g30710 FvH4_3g30880 FvH4_3g31911 FvH4_3g32572 FvH4_3g38790 FvH4_3g45880 FvH4_4g03280 FvH4_4g08270 FvH4_4g08610 FvH4_4g08911 FvH4_4g10030 FvH4_4g10220 FvH4_4g10221 FvH4_4g10232 FvH4_4g10233 FvH4_4g10364 FvH4_4g14460 FvH4_4g16210 FvH4_4g27150 FvH4_5g06880 FvH4_5g13180 FvH4_5g19450 FvH4_5g20620 FvH4_5g22931 FvH4_5g24202 FvH4_5g24970 FvH4_5g31450 FvH4_5g31660 FvH4_5g32550 FvH4_6g06811 FvH4_6g17172 FvH4_6g17190 FvH4_6g18010 FvH4_6g21800 FvH4_6g21871 FvH4_6g23101 FvH4_6g23360 FvH4_6g24310 FvH4_6g30100 FvH4_6g31520 FvH4_6g31530 FvH4_6g34820 FvH4_6g35510 FvH4_6g40350 FvH4_6g40360 FvH4_7g09590 FvH4_7g16000

Species

Orthologous Gene IDs

fragaria_vesca

FvH4_1g15161 FvH4_1g18892 FvH4_1g18893 FvH4_1g20162 FvH4_1g26653 FvH4_1g29050 FvH4_1g29090 FvH4_1g29091 FvH4_2g00890 FvH4_2g00890 FvH4_2g14380 FvH4_2g17540 FvH4_2g19090 FvH4_2g19770 FvH4_2g30343 FvH4_2g30344 FvH4_2g30380 FvH4_2g34010 FvH4_3g18731 FvH4_3g21360 FvH4_3g23880 FvH4_3g26330 FvH4_3g26702 FvH4_3g30710 FvH4_3g30880 FvH4_3g31911 FvH4_3g32572 FvH4_3g38790 FvH4_3g45880 FvH4_4g03280 FvH4_4g08270 FvH4_4g08610 FvH4_4g08911 FvH4_4g10030 FvH4_4g10220 FvH4_4g10221 FvH4_4g10232 FvH4_4g10233 FvH4_4g10364 FvH4_4g14460 FvH4_4g16210 FvH4_4g27150 FvH4_5g06880 FvH4_5g13180 FvH4_5g19450 FvH4_5g20620 FvH4_5g22931 FvH4_5g24202 FvH4_5g24970 FvH4_5g31450 FvH4_5g31660 FvH4_5g32550 FvH4_6g06811 FvH4_6g17172 FvH4_6g17190 FvH4_6g18010 FvH4_6g21800 FvH4_6g21871 FvH4_6g23101 FvH4_6g23360 FvH4_6g24310 FvH4_6g30100 FvH4_6g31520 FvH4_6g31530 FvH4_6g34820 FvH4_6g35510 FvH4_6g40350 FvH4_6g40360 FvH4_7g09590 FvH4_7g16000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	365
Acc36I	ACCTGC	1 cut(s)	365
AciI	CCGC	3 cut(s)	38, 88, 473
AclWI	GGATC	1 cut(s)	349
AcoI	YGGCCR	1 cut(s)	379
AcsI	RAATTY	1 cut(s)	137
AfiI	CCNNNNNNNGG	1 cut(s)	292
AflII	CTTAAG	1 cut(s)	311
AgsI	TTSAA	2 cut(s)	238, 323
AluBI	AGCT	4 cut(s)	155, 194, 283, 467
AluI	AGCT	4 cut(s)	155, 194, 283, 467
Alw21I	GWGCWC	2 cut(s)	78, 285
Alw26I	GTCTC	1 cut(s)	158
AlwI	GGATC	1 cut(s)	349
Ama87I	CYCGRG	1 cut(s)	411
AoxI	GGCC	2 cut(s)	379, 456
ApeKI	GCWGC	1 cut(s)	194
ApoI	RAATTY	1 cut(s)	137
AspS9I	GGNCC	2 cut(s)	112, 456
AsuC2I	CCSGG	2 cut(s)	272, 346
AvaI	CYCGRG	1 cut(s)	411
AvaII	GGWCC	1 cut(s)	112
BanII	GRGCYC	1 cut(s)	285
Bbv12I	GWGCWC	2 cut(s)	78, 285
BbvCI	CCTCAGC	2 cut(s)	447, 468
BbvI	GCAGC	1 cut(s)	181
BcnI	CCSGG	2 cut(s)	272, 346
BcoDI	GTCTC	1 cut(s)	158
BfmI	CTRYAG	1 cut(s)	103
BfrI	CTTAAG	1 cut(s)	311
BfuAI	ACCTGC	1 cut(s)	365
BisI	GCNGC	3 cut(s)	39, 89, 195
BlpI	GCTNAGC	1 cut(s)	279
BlsI	GCNGC	3 cut(s)	40, 90, 196
Bme1390I	CCNGG	2 cut(s)	272, 346
Bme18I	GGWCC	1 cut(s)	112
BmeT110I	CYCGRG	1 cut(s)	411
BmgT120I	GGNCC	2 cut(s)	112, 456
BmrFI	CCNGG	2 cut(s)	272, 346
Bpu10I	CCTNAGC	2 cut(s)	447, 468
Bpu1102I	GCTNAGC	1 cut(s)	279
BpuEI	CTTGAG	1 cut(s)	227
BpuMI	CCSGG	2 cut(s)	272, 346
BsaJI	CCNNGG	2 cut(s)	55, 358
Bsc4I	CCNNNNNNNGG	1 cut(s)	292
BseDI	CCNNGG	2 cut(s)	55, 358
BseGI	GGATG	1 cut(s)	267
BseLI	CCNNNNNNNGG	1 cut(s)	292
BseMII	CTCAG	3 cut(s)	270, 438, 459
BseRI	GAGGAG	2 cut(s)	443, 464
BseXI	GCAGC	1 cut(s)	181
BseYI	CCCAGC	1 cut(s)	151
Bsh1285I	CGRYCG	1 cut(s)	35
BshFI	GGCC	2 cut(s)	381, 458
BsiEI	CGRYCG	1 cut(s)	35
BsiHKAI	GWGCWC	2 cut(s)	78, 285
BsiHKCI	CYCGRG	1 cut(s)	411
BsiSI	CCGG	2 cut(s)	272, 345
BslI	CCNNNNNNNGG	1 cut(s)	292
BsmAI	GTCTC	1 cut(s)	158
BsmBI	CGTCTC	1 cut(s)	158
BsmI	GAATGC	1 cut(s)	259
BsnI	GGCC	2 cut(s)	381, 458
BsoBI	CYCGRG	1 cut(s)	411
Bsp1286I	GDGCHC	2 cut(s)	78, 285
Bsp143I	GATC	2 cut(s)	32, 354
Bsp1720I	GCTNAGC	1 cut(s)	279
BspACI	CCGC	3 cut(s)	38, 88, 473
BspANI	GGCC	2 cut(s)	381, 458
BspCNI	CTCAG	3 cut(s)	271, 439, 460
BspHI	TCATGA	1 cut(s)	418
BspMI	ACCTGC	1 cut(s)	365
BspPI	GGATC	1 cut(s)	349
BspQI	GCTCTTC	2 cut(s)	334, 364
BspTI	CTTAAG	1 cut(s)	311
BssECI	CCNNGG	2 cut(s)	55, 358
BssMI	GATC	2 cut(s)	32, 354
Bst4CI	ACNGT	3 cut(s)	56, 178, 387
Bst6I	CTCTTC	2 cut(s)	334, 364
BstAFI	CTTAAG	1 cut(s)	311
BstDEI	CTNAG	3 cut(s)	279, 447, 468
BstDSI	CCRYGG	2 cut(s)	55, 358
BstF5I	GGATG	1 cut(s)	267
BstKTI	GATC	2 cut(s)	35, 357
BstMAI	GTCTC	1 cut(s)	158
BstMBI	GATC	2 cut(s)	32, 354
BstMCI	CGRYCG	1 cut(s)	35
BstMWI	GCNNNNNNNGC	1 cut(s)	464
BstSCI	CCNGG	2 cut(s)	270, 344
BstSFI	CTRYAG	1 cut(s)	103
BstV1I	GCAGC	1 cut(s)	181
BstX2I	RGATCY	1 cut(s)	354
BstYI	RGATCY	1 cut(s)	354
BsuRI	GGCC	2 cut(s)	381, 458
BtgI	CCRYGG	2 cut(s)	55, 358
BtsCI	GGATG	1 cut(s)	267
BveI	ACCTGC	1 cut(s)	365
CciI	TCATGA	1 cut(s)	418
Cfr13I	GGNCC	2 cut(s)	112, 456
CviAII	CATG	1 cut(s)	419
DdeI	CTNAG	3 cut(s)	279, 447, 468
DpnI	GATC	2 cut(s)	34, 356
DpnII	GATC	2 cut(s)	32, 354
EaeI	YGGCCR	1 cut(s)	379
Eam1104I	CTCTTC	2 cut(s)	334, 364
EarI	CTCTTC	2 cut(s)	334, 364
Ecl136II	GAGCTC	1 cut(s)	283
Eco24I	GRGCYC	1 cut(s)	285
Eco47I	GGWCC	1 cut(s)	112
Eco53kI	GAGCTC	1 cut(s)	283
Eco88I	CYCGRG	1 cut(s)	411
EcoICRI	GAGCTC	1 cut(s)	283
EcoT38I	GRGCYC	1 cut(s)	285
Esp3I	CGTCTC	1 cut(s)	158
FaeI	CATG	1 cut(s)	422
FaiI	YATR	4 cut(s)	11, 171, 420, 441
FatI	CATG	1 cut(s)	418
Fnu4HI	GCNGC	3 cut(s)	39, 89, 195
FokI	GGATG	1 cut(s)	254
FriOI	GRGCYC	1 cut(s)	285
Fsp4HI	GCNGC	3 cut(s)	39, 89, 195
GluI	GCNGC	3 cut(s)	39, 89, 195
GsaI	CCCAGC	1 cut(s)	155
HaeIII	GGCC	2 cut(s)	381, 458
HapII	CCGG	2 cut(s)	272, 345
Hin1II	CATG	1 cut(s)	422
HincII	GTYRAC	1 cut(s)	181
HindII	GTYRAC	1 cut(s)	181
HinfI	GANTC	4 cut(s)	68, 202, 307, 330
HpaII	CCGG	2 cut(s)	272, 345
Hpy166II	GTNNAC	2 cut(s)	115, 181
Hpy188I	TCNGA	1 cut(s)	73
Hpy188III	TCNNGA	3 cut(s)	206, 411, 419
Hpy8I	GTNNAC	2 cut(s)	115, 181
HpyAV	CCTTC	1 cut(s)	121
HpyCH4III	ACNGT	3 cut(s)	56, 178, 387
HpyCH4IV	ACGT	2 cut(s)	167, 406
HpyCH4V	TGCA	3 cut(s)	217, 245, 257
HpyF10VI	GCNNNNNNNGC	1 cut(s)	464
HpyF3I	CTNAG	3 cut(s)	279, 447, 468
HpySE526I	ACGT	2 cut(s)	167, 406
Hsp92II	CATG	1 cut(s)	422
Kzo9I	GATC	2 cut(s)	32, 354
LguI	GCTCTTC	2 cut(s)	334, 364
LmnI	GCTCC	2 cut(s)	73, 288
LpnPI	CCDG	8 cut(s)	91, 156, 165, 276, 285, 312, 358, 360
Lsp1109I	GCAGC	1 cut(s)	181
MaeII	ACGT	2 cut(s)	167, 406
MalI	GATC	2 cut(s)	34, 356
MboI	GATC	2 cut(s)	32, 354
MboII	GAAGA	4 cut(s)	262, 351, 381, 387
MflI	RGATCY	1 cut(s)	354
MhlI	GDGCHC	2 cut(s)	78, 285
MluCI	AATT	2 cut(s)	137, 233
MlyI	GAGTC	2 cut(s)	77, 339
MmeI	TCCRAC	1 cut(s)	51
MnlI	CCTC	8 cut(s)	202, 217, 268, 415, 421, 442, 447, 463
MseI	TTAA	1 cut(s)	312
MspCI	CTTAAG	1 cut(s)	311
MspI	CCGG	2 cut(s)	272, 345
MspR9I	CCNGG	2 cut(s)	272, 346
Mva1269I	GAATGC	1 cut(s)	259
MwoI	GCNNNNNNNGC	1 cut(s)	464
NciI	CCSGG	2 cut(s)	272, 346
NdeII	GATC	2 cut(s)	32, 354
NlaIII	CATG	1 cut(s)	422
PaeR7I	CTCGAG	1 cut(s)	411
PagI	TCATGA	1 cut(s)	418
PaqCI	CACCTGC	1 cut(s)	365
PciSI	GCTCTTC	2 cut(s)	334, 364
PctI	GAATGC	1 cut(s)	259
PfeI	GAWTC	2 cut(s)	202, 307
PflFI	GACNNNGTC	1 cut(s)	176
PfoI	TCCNGGA	1 cut(s)	270
PkrI	GCNGC	3 cut(s)	40, 90, 196
Ple19I	CGATCG	1 cut(s)	35
PleI	GAGTC	2 cut(s)	76, 338
PpsI	GAGTC	2 cut(s)	76, 338
Psp124BI	GAGCTC	1 cut(s)	285
PspFI	CCCAGC	1 cut(s)	151
PspPI	GGNCC	2 cut(s)	112, 456
PsuI	RGATCY	1 cut(s)	354
PsyI	GACNNNGTC	1 cut(s)	176
PvuI	CGATCG	1 cut(s)	35
SacI	GAGCTC	1 cut(s)	285
SapI	GCTCTTC	2 cut(s)	334, 364
SaqAI	TTAA	1 cut(s)	312
SatI	GCNGC	3 cut(s)	39, 89, 195
Sau3AI	GATC	2 cut(s)	32, 354
Sau96I	GGNCC	2 cut(s)	112, 456
SchI	GAGTC	2 cut(s)	77, 339
ScrFI	CCNGG	2 cut(s)	272, 346
SduI	GDGCHC	2 cut(s)	78, 285
SfcI	CTRYAG	1 cut(s)	103
Sfr274I	CTCGAG	1 cut(s)	411
SinI	GGWCC	1 cut(s)	112
SlaI	CTCGAG	1 cut(s)	411
SmlI	CTYRAG	3 cut(s)	206, 311, 411
SmoI	CTYRAG	3 cut(s)	206, 311, 411
Sse9I	AATT	2 cut(s)	137, 233
SsiI	CCGC	3 cut(s)	38, 88, 473
SstI	GAGCTC	1 cut(s)	285
StyD4I	CCNGG	2 cut(s)	270, 344
TaaI	ACNGT	3 cut(s)	56, 178, 387
TaiI	ACGT	2 cut(s)	170, 409
TaqI	TCGA	1 cut(s)	412
TasI	AATT	2 cut(s)	137, 233
TauI	GCSGC	2 cut(s)	41, 91
TfiI	GAWTC	2 cut(s)	202, 307
Tru1I	TTAA	1 cut(s)	312
Tru9I	TTAA	1 cut(s)	312
TseI	GCWGC	1 cut(s)	194
TspDTI	ATGAA	3 cut(s)	17, 320, 407
TspGWI	ACGGA	1 cut(s)	347
Tth111I	GACNNNGTC	1 cut(s)	176
Vha464I	CTTAAG	1 cut(s)	311
VpaK11BI	GGWCC	1 cut(s)	112
XapI	RAATTY	1 cut(s)	137
XcmI	CCANNNNNNNNNTGG	1 cut(s)	294
XhoI	CTCGAG	1 cut(s)	411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.