FvH4_2g19090

Plant transposase (Ptta/En/Spm family)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000776
Physical Location & Seq
Forward (+)
16285891 .. 16289159
3269 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g19090.t1

Sequence Viewer

Length: 1185 bp
ATGCCGGTGCTCGGGAAAAGGAAAGCTCGGGAGGAGGCGGAGGAGCGTTTGCGACTGGAGTGTGCGCAACAATACGGCTCCTCTTCTGCCGGATCCAACACAGCCACTCCGACGACGACGGCGCCATCCCTTGCTGAATCGGCTCCCTCTCTAACCGACGACGATGACGAGTCAGTGACCCGAGTATCAGAAACACCGTCTGAGGGTGCACCCCGGGTTGTCAGCGCTCGCCGGAAACCGAAGAAAAGCGGAGGACCTCCCCAGAAAGGCAACCGGGGTGTAGTGAACTGCTCAAAGGTGTCTGATATTGTGAAAAGCACGGGGAAGAAGATTGACTTGGACTTTGATTGGGAGTTTATTGATGGACCTCGTAATTCTGATGTATGCAGCCTTTTTGTCAATACTGTTGGAAGCATCATACGCAAAAGAGTGGCAATGAAGAAGGAATCGTGTGTTTTTTTTATCATTGATTTTAATGATATAAAAGCCATTAAATGGATCAATAAAAGGGCGGCAAGTGTATTCCGTGAATGGAAGCATGACTTGTCTGAGATTCACAAGCTCGGGGGGAGAGATATGATTCCGGAAGAGCTTTTGCACAGGCGGGATGAGTGGGAGTGGCTTTGCACTCATTTTGATTCGGATAAGTACAAGAGACGATCGGTTGCCAACTCCAGCAACCGTGGTAAGAAGGAGTTGGAGCACCGCTCAGGGAGGAAACCTATCATTTACCGGGTGCCCAAGCTAAGGGATAAGGGTGCTTCATTACCGGTGGTTGACGTGTACCCGGTGACATACGACATCAACCAGCCTAAAGCTGCTGAGCATTATGAAAAGTTGAAGGAACAAGGTGCTATTGTTAAGACTTTGCAAAGCACTCAACACCCGGACATCCCACCGGATCAGTTGCCTCCTTTGGACTGGCCAACTCAACTAAGTGTTGTGCAAAATGCTATGGGAGAAACAAAAGGGTCTTACATTCGTGGTATTGGACGAGCAGGCGTCCTAGAGAAGAGCAGAAGGTCATCATCTTCCTCTTCATGCTCTCGACCGAATAATGAGGCGATGGCTGAGATAGTGGCTGTTAGAAAGGAGGCGGCTGAGGCACAAGAGAGGGCTGACAAAGCACAAGAGAGGGCTGAAAATGCCCAAAAGATCGCTGAGCAGTCTGTTGCAGATTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

395

Amino Acids

43.99

Weight (kDa)

9.09

Isoelectric Point (pI)

46.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 66
AccB1I GGYRCC 2 cut(s) 121, 736
AccB7I CCANNNNNTGG 1 cut(s) 495
AccBSI CCGCTC 1 cut(s) 708
AccIII TCCGGA 1 cut(s) 583
AciI CCGC 6 cut(s) 38, 249, 512, 604, 706, 1097
AclWI GGATC 4 cut(s) 87, 100, 506, 909
AcoI YGGCCR 1 cut(s) 923
AcyI GRCGYC 2 cut(s) 122, 1002
AfaI GTAC 2 cut(s) 650, 785
AfeI AGCGCT 1 cut(s) 226
AfiI CCNNNNNNNGG 5 cut(s) 11, 203, 266, 495, 747
AflIII ACRYGT 1 cut(s) 780
AgeI ACCGGT 1 cut(s) 769
AgsI TTSAA 1 cut(s) 841
AjiI CACGTC 1 cut(s) 781
AjuI GAANNNNNNNTTGG 2 cut(s) 320, 352
AluBI AGCT 5 cut(s) 26, 562, 592, 745, 818
AluI AGCT 5 cut(s) 26, 562, 592, 745, 818
Alw21I GWGCWC 3 cut(s) 12, 211, 705
Alw26I GTCTC 1 cut(s) 649
Alw44I GTGCAC 1 cut(s) 207
AlwI GGATC 4 cut(s) 87, 100, 506, 909
Ama87I CYCGRG 5 cut(s) 11, 27, 180, 213, 563
Aor13HI TCCGGA 1 cut(s) 583
Aor51HI AGCGCT 1 cut(s) 226
AoxI GGCC 1 cut(s) 923
ApaLI GTGCAC 1 cut(s) 207
ApeKI GCWGC 2 cut(s) 387, 818
ArsI GACNNNNNNTTYG 2 cut(s) 326, 358
AsiGI ACCGGT 1 cut(s) 769
AspLEI GCGC 3 cut(s) 67, 124, 227
AspS9I GGNCC 2 cut(s) 254, 365
AsuC2I CCSGG 6 cut(s) 214, 215, 275, 734, 788, 887
AsuHPI GGTGA 1 cut(s) 802
AvaI CYCGRG 5 cut(s) 11, 27, 180, 213, 563
AvaII GGWCC 2 cut(s) 254, 365
BaeGI GKGCMC 2 cut(s) 211, 741
BaeI ACNNNNGTAYC 2 cut(s) 168, 201
BalI TGGCCA 1 cut(s) 925
BamHI GGATCC 1 cut(s) 92
BanI GGYRCC 2 cut(s) 121, 736
Bbv12I GWGCWC 3 cut(s) 12, 211, 705
BbvCI CCTCAGC 1 cut(s) 1101
BbvI GCAGC 2 cut(s) 399, 805
BccI CCATC 3 cut(s) 133, 356, 1060
BceAI ACGGC 2 cut(s) 91, 135
BcnI CCSGG 6 cut(s) 214, 215, 275, 734, 788, 887
BcoDI GTCTC 1 cut(s) 649
BfaI CTAG 1 cut(s) 1007
BfoI RGCGCY 2 cut(s) 125, 228
BisI GCNGC 4 cut(s) 388, 513, 819, 1098
BlpI GCTNAGC 2 cut(s) 822, 1161
BlsI GCNGC 4 cut(s) 389, 514, 820, 1099
Bme1390I CCNGG 6 cut(s) 214, 215, 275, 734, 788, 887
Bme18I GGWCC 2 cut(s) 254, 365
BmeT110I CYCGRG 5 cut(s) 11, 27, 180, 213, 563
BmgBI CACGTC 1 cut(s) 781
BmgT120I GGNCC 2 cut(s) 254, 365
BmiI GGNNCC 5 cut(s) 79, 94, 123, 144, 738
BmrFI CCNGG 6 cut(s) 214, 215, 275, 734, 788, 887
BmsI GCATC 1 cut(s) 423
BplI GAGNNNNNCTC 2 cut(s) 692, 724
BpmI CTGGAG 2 cut(s) 77, 658
Bpu10I CCTNAGC 3 cut(s) 709, 746, 1101
Bpu1102I GCTNAGC 2 cut(s) 822, 1161
BpuMI CCSGG 6 cut(s) 214, 215, 275, 734, 788, 887
BsaHI GRCGYC 2 cut(s) 122, 1002
BsaJI CCNNGG 4 cut(s) 212, 213, 274, 682
BsaWI WCCGGW 3 cut(s) 583, 769, 898
BsaXI ACNNNNNCTCC 2 cut(s) 91, 121
Bsc4I CCNNNNNNNGG 5 cut(s) 11, 203, 266, 495, 747
Bse118I RCCGGY 2 cut(s) 4, 769
Bse1I ACTGG 2 cut(s) 60, 926
Bse3DI GCAATG 1 cut(s) 441
BseAI TCCGGA 1 cut(s) 583
BseDI CCNNGG 4 cut(s) 212, 213, 274, 682
BseGI GGATG 3 cut(s) 125, 613, 891
BseLI CCNNNNNNNGG 5 cut(s) 11, 203, 266, 495, 747
BseMI GCAATG 1 cut(s) 441
BseMII CTCAG 7 cut(s) 192, 540, 723, 813, 1062, 1092, 1152
BseNI ACTGG 2 cut(s) 60, 926
BseRI GAGGAG 3 cut(s) 47, 56, 70
BseSI GKGCMC 2 cut(s) 211, 741
BseXI GCAGC 2 cut(s) 399, 805
Bsh1285I CGRYCG 2 cut(s) 662, 1052
BshFI GGCC 1 cut(s) 925
BshNI GGYRCC 2 cut(s) 121, 736
BshTI ACCGGT 1 cut(s) 769
BsiEI CGRYCG 2 cut(s) 662, 1052
BsiHKAI GWGCWC 3 cut(s) 12, 211, 705
BsiHKCI CYCGRG 5 cut(s) 11, 27, 180, 213, 563
BslI CCNNNNNNNGG 5 cut(s) 11, 203, 266, 495, 747
BsmAI GTCTC 1 cut(s) 649
BsmBI CGTCTC 1 cut(s) 649
BsnI GGCC 1 cut(s) 925
BsoBI CYCGRG 5 cut(s) 11, 27, 180, 213, 563
Bsp1286I GDGCHC 4 cut(s) 12, 211, 705, 741
Bsp13I TCCGGA 1 cut(s) 583
Bsp143I GATC 5 cut(s) 92, 498, 659, 901, 1155
Bsp1720I GCTNAGC 2 cut(s) 822, 1161
BspACI CCGC 6 cut(s) 38, 249, 512, 604, 706, 1097
BspANI GGCC 1 cut(s) 925
BspCNI CTCAG 7 cut(s) 193, 541, 722, 814, 1063, 1093, 1153
BspEI TCCGGA 1 cut(s) 583
BspLI GGNNCC 5 cut(s) 79, 94, 123, 144, 738
BspPI GGATC 4 cut(s) 87, 100, 506, 909
BspQI GCTCTTC 2 cut(s) 582, 1007
BspT107I GGYRCC 2 cut(s) 121, 736
BsrBI CCGCTC 1 cut(s) 708
BsrDI GCAATG 1 cut(s) 441
BsrFI RCCGGY 2 cut(s) 4, 769
BsrI ACTGG 2 cut(s) 60, 926
BssAI RCCGGY 2 cut(s) 4, 769
BssECI CCNNGG 4 cut(s) 212, 213, 274, 682
BssMI GATC 5 cut(s) 92, 498, 659, 901, 1155
BssNI GRCGYC 2 cut(s) 122, 1002
Bst4CI ACNGT 3 cut(s) 198, 406, 683
Bst6I CTCTTC 4 cut(s) 88, 582, 1007, 1042
BstACI GRCGYC 2 cut(s) 122, 1002
BstC8I GCNNGC 2 cut(s) 229, 1000
BstDEI CTNAG 9 cut(s) 201, 549, 709, 746, 822, 935, 1071, 1101, 1161
BstDSI CCRYGG 1 cut(s) 682
BstF5I GGATG 3 cut(s) 125, 613, 891
BstH2I RGCGCY 2 cut(s) 125, 228
BstHHI GCGC 3 cut(s) 67, 124, 227
BstKTI GATC 5 cut(s) 95, 501, 662, 904, 1158
BstMAI GTCTC 1 cut(s) 649
BstMBI GATC 5 cut(s) 92, 498, 659, 901, 1155
BstMCI CGRYCG 2 cut(s) 662, 1052
BstMWI GCNNNNNNNGC 5 cut(s) 140, 420, 1103, 1124, 1145
BstSCI CCNGG 6 cut(s) 212, 213, 273, 732, 786, 885
BstSLI GKGCMC 2 cut(s) 211, 741
BstV1I GCAGC 2 cut(s) 399, 805
BstX2I RGATCY 1 cut(s) 92
BstYI RGATCY 1 cut(s) 92
BsuRI GGCC 1 cut(s) 925
BtgI CCRYGG 1 cut(s) 682
BtgZI GCGATG 1 cut(s) 1079
BtrI CACGTC 1 cut(s) 781
BtsCI GGATG 3 cut(s) 125, 613, 891
BtsIMutI CAGTG 1 cut(s) 180
Cac8I GCNNGC 2 cut(s) 229, 1000
CfoI GCGC 3 cut(s) 67, 124, 227
Cfr10I RCCGGY 2 cut(s) 4, 769
Cfr13I GGNCC 2 cut(s) 254, 365
Cfr9I CCCGGG 1 cut(s) 213
CseI GACGC 1 cut(s) 991
Csp6I GTAC 2 cut(s) 649, 784
CspAI ACCGGT 1 cut(s) 769
CviAII CATG 2 cut(s) 539, 1041
CviQI GTAC 2 cut(s) 649, 784
DdeI CTNAG 9 cut(s) 201, 549, 709, 746, 822, 935, 1071, 1101, 1161
DinI GGCGCC 1 cut(s) 123
DpnI GATC 5 cut(s) 94, 500, 661, 903, 1157
DpnII GATC 5 cut(s) 92, 498, 659, 901, 1155
EaeI YGGCCR 1 cut(s) 923
Eam1104I CTCTTC 4 cut(s) 88, 582, 1007, 1042
EarI CTCTTC 4 cut(s) 88, 582, 1007, 1042
EciI GGCGGA 1 cut(s) 53
Eco47I GGWCC 2 cut(s) 254, 365
Eco47III AGCGCT 1 cut(s) 226
Eco88I CYCGRG 5 cut(s) 11, 27, 180, 213, 563
EcoO109I RGGNCCY 1 cut(s) 254
EgeI GGCGCC 1 cut(s) 123
EheI GGCGCC 1 cut(s) 123
Esp3I CGTCTC 1 cut(s) 649
FaeI CATG 2 cut(s) 542, 1044
FaiI YATR 9 cut(s) 385, 419, 482, 540, 578, 796, 831, 956, 1042
FalI AAGNNNNNCTT 4 cut(s) 320, 352, 527, 559
FatI CATG 2 cut(s) 538, 1040
FauI CCCGC 1 cut(s) 597
Fnu4HI GCNGC 4 cut(s) 388, 513, 819, 1098
FokI GGATG 3 cut(s) 112, 620, 878
Fsp4HI GCNGC 4 cut(s) 388, 513, 819, 1098
FspBI CTAG 1 cut(s) 1007
FspI TGCGCA 1 cut(s) 66
GlaI GCGC 3 cut(s) 66, 123, 226
GluI GCNGC 4 cut(s) 388, 513, 819, 1098
GsuI CTGGAG 2 cut(s) 77, 658
HaeII RGCGCY 2 cut(s) 125, 228
HaeIII GGCC 1 cut(s) 925
HgaI GACGC 1 cut(s) 991
HhaI GCGC 3 cut(s) 67, 124, 227
Hin1I GRCGYC 2 cut(s) 122, 1002
Hin1II CATG 2 cut(s) 542, 1044
Hin6I GCGC 3 cut(s) 65, 122, 225
HinP1I GCGC 3 cut(s) 65, 122, 225
HincII GTYRAC 1 cut(s) 778
HindII GTYRAC 1 cut(s) 778
HinfI GANTC 6 cut(s) 137, 170, 446, 553, 580, 638
HphI GGTGA 1 cut(s) 802
Hpy166II GTNNAC 4 cut(s) 209, 286, 778, 784
Hpy188I TCNGA 7 cut(s) 111, 190, 202, 304, 379, 550, 643
Hpy188III TCNNGA 4 cut(s) 13, 29, 584, 1047
Hpy8I GTNNAC 4 cut(s) 209, 286, 778, 784
Hpy99I CGWCG 5 cut(s) 115, 118, 121, 161, 164
HpyAV CCTTC 4 cut(s) 436, 685, 835, 1014
HpyCH4III ACNGT 3 cut(s) 198, 406, 683
HpyCH4IV ACGT 1 cut(s) 780
HpyCH4V TGCA 7 cut(s) 209, 387, 598, 627, 871, 946, 1175
HpyF10VI GCNNNNNNNGC 5 cut(s) 140, 420, 1103, 1124, 1145
HpyF3I CTNAG 9 cut(s) 201, 549, 709, 746, 822, 935, 1071, 1101, 1161
HpySE526I ACGT 1 cut(s) 780
Hsp92I GRCGYC 2 cut(s) 122, 1002
Hsp92II CATG 2 cut(s) 542, 1044
HspAI GCGC 3 cut(s) 65, 122, 225
KasI GGCGCC 1 cut(s) 121
Kpn2I TCCGGA 1 cut(s) 583
Kzo9I GATC 5 cut(s) 92, 498, 659, 901, 1155
LguI GCTCTTC 2 cut(s) 582, 1007
LmnI GCTCC 4 cut(s) 43, 83, 148, 700
Lsp1109I GCAGC 2 cut(s) 399, 805
LweI GCATC 1 cut(s) 423
MaeI CTAG 1 cut(s) 1007
MaeII ACGT 1 cut(s) 780
MaeIII GTNAC 2 cut(s) 175, 790
MalI GATC 5 cut(s) 94, 500, 661, 903, 1157
MbiI CCGCTC 1 cut(s) 708
MboI GATC 5 cut(s) 92, 498, 659, 901, 1155
MboII GAAGA 9 cut(s) 75, 253, 337, 340, 451, 599, 1023, 1024, 1029
MflI RGATCY 1 cut(s) 92
MhlI GDGCHC 4 cut(s) 12, 211, 705, 741
MlsI TGGCCA 1 cut(s) 925
MluCI AATT 1 cut(s) 373
MluNI TGGCCA 1 cut(s) 925
Mly113I GGCGCC 1 cut(s) 122
MlyI GAGTC 1 cut(s) 179
MmeI TCCRAC 4 cut(s) 120, 134, 388, 678
Mox20I TGGCCA 1 cut(s) 925
MroI TCCGGA 1 cut(s) 583
MscI TGGCCA 1 cut(s) 925
MseI TTAA 4 cut(s) 474, 492, 861, 1183
Msp20I TGGCCA 1 cut(s) 925
MspR9I CCNGG 6 cut(s) 214, 215, 275, 734, 788, 887
MwoI GCNNNNNNNGC 5 cut(s) 140, 420, 1103, 1124, 1145
NarI GGCGCC 1 cut(s) 122
NciI CCSGG 6 cut(s) 214, 215, 275, 734, 788, 887
NdeII GATC 5 cut(s) 92, 498, 659, 901, 1155
NlaIII CATG 2 cut(s) 542, 1044
NlaIV GGNNCC 5 cut(s) 79, 94, 123, 144, 738
NmuCI GTSAC 2 cut(s) 175, 790
NsbI TGCGCA 1 cut(s) 66
PciSI GCTCTTC 2 cut(s) 582, 1007
PcsI WCGNNNNNNNCGW 1 cut(s) 165
PfeI GAWTC 5 cut(s) 137, 446, 553, 580, 638
PflMI CCANNNNNTGG 1 cut(s) 495
PinAI ACCGGT 1 cut(s) 769
PkrI GCNGC 4 cut(s) 389, 514, 820, 1099
Ple19I CGATCG 1 cut(s) 662
PleI GAGTC 1 cut(s) 178
PluTI GGCGCC 1 cut(s) 125
PpsI GAGTC 1 cut(s) 178
PpuMI RGGWCCY 1 cut(s) 254
Psp5II RGGWCCY 1 cut(s) 254
PspN4I GGNNCC 5 cut(s) 79, 94, 123, 144, 738
PspPI GGNCC 2 cut(s) 254, 365
PspPPI RGGWCCY 1 cut(s) 254
PsuI RGATCY 1 cut(s) 92
PvuI CGATCG 1 cut(s) 662
RsaI GTAC 2 cut(s) 650, 785
RsaNI GTAC 2 cut(s) 649, 784
SapI GCTCTTC 2 cut(s) 582, 1007
SaqAI TTAA 4 cut(s) 474, 492, 861, 1183
SatI GCNGC 4 cut(s) 388, 513, 819, 1098
Sau3AI GATC 5 cut(s) 92, 498, 659, 901, 1155
Sau96I GGNCC 2 cut(s) 254, 365
SchI GAGTC 1 cut(s) 179
ScrFI CCNGG 6 cut(s) 214, 215, 275, 734, 788, 887
SduI GDGCHC 4 cut(s) 12, 211, 705, 741
SfaNI GCATC 1 cut(s) 423
SfoI GGCGCC 1 cut(s) 123
SinI GGWCC 2 cut(s) 254, 365
SmaI CCCGGG 1 cut(s) 215
Sse9I AATT 1 cut(s) 373
SsiI CCGC 6 cut(s) 38, 249, 512, 604, 706, 1097
SspDI GGCGCC 1 cut(s) 121
SspMI CTAG 1 cut(s) 1007
StyD4I CCNGG 6 cut(s) 212, 213, 273, 732, 786, 885
TaaI ACNGT 3 cut(s) 198, 406, 683
TaiI ACGT 1 cut(s) 783
TaqI TCGA 1 cut(s) 1048
TaqII GACCGA 1 cut(s) 1066
TasI AATT 1 cut(s) 373
TatI WGTACW 1 cut(s) 648
TauI GCSGC 2 cut(s) 515, 1100
TfiI GAWTC 5 cut(s) 137, 446, 553, 580, 638
Tru1I TTAA 4 cut(s) 474, 492, 861, 1183
Tru9I TTAA 4 cut(s) 474, 492, 861, 1183
TscAI CASTG 1 cut(s) 180
TseFI GTSAC 2 cut(s) 175, 790
TseI GCWGC 2 cut(s) 387, 818
Tsp45I GTSAC 2 cut(s) 175, 790
TspDTI ATGAA 4 cut(s) 452, 753, 846, 1029
TspGWI ACGGA 1 cut(s) 515
TspMI CCCGGG 1 cut(s) 213
TspRI CASTG 1 cut(s) 180
Van91I CCANNNNNTGG 1 cut(s) 495
VneI GTGCAC 1 cut(s) 207
VpaK11BI GGWCC 2 cut(s) 254, 365
XmaI CCCGGG 1 cut(s) 213
XspI CTAG 1 cut(s) 1007
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.