FvH4_3g16160

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000319
Physical Location & Seq
Forward (+)
10179582 .. 10186212
6631 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g16160.t1

Sequence Viewer

Length: 981 bp
ATGGATCCTGAGCTATATGAGGCTGTGACATTAGGTGATACTAAGATCTTGGGAAGAATTAGAGGCGCCGGCGAATGGAAGACGCCAAACGAGAGCAATATTTTTCACATCGCCGCTGAATTCAAGCAAATAGAATTCTTCAAAAAAGTCCCACTGGACGAGCAATCATTTCAGCTCTTTTGGGCCGTCAACAAGAAGGGTGACACTCCACTGCACGTTGCTGCCAGAGCCGGTTGCAATGAAATAGTTAGGTTGCTGATTGATCAGCCGAAAACGCTGCACAATGGAAGAGCTGATCAAGAAAGAGGACAAAGTGATGGTGAAGCTCAAAAGGAGTTGCTTCAAATGACTAATAAGAATCAAGATACGGCTCTGCATGTTGCTACTCGATATCGTCACTTCGAAGTTGTCAAGCTGTTAGTGGAGGCCAATCCTCAACTATGTGGACTAACTAACAACTCCAACGAATCCCCGTTGTTCGTCGCTATTCGTCAGGACTTTCTAGTGGCAGCTGATGTTTTCATCAAAAGTTCAGTACCTCCGTCTTTTGAAGGGATCAATGGTGTGACAGCTCTGCATGCCGCCGTTAATCTTACTGATAAAGAAGCTGAAGTAATCGTGAAGGATCTGGTGGGTAAGTATCCTGAGACAATCACAAAAACTGATCAACTTGGGTGGACACCTTTACATTATGCTGCATTAAGTGGGAACGTTGAAGCTAGTCGAGTGCTGGTGCAAGGTAGTACTTCTGTTACTTATATGTTAGACAGATCTGGAATGTCCGCTCTCCATGTTGCGGCCTATGCAGGCCAAACCAAAGTAATGGAAGAGTTTATTCGACGTCGACCTGATTCTTGTCACTTGGTCAATCATAAAGGGCAAACCATTCTTCATACTGCAGTCATGGGAGGAGTGGAGGACAGAGAAGTTCTTGTTAGACTGGTAACAGATGGGAAAAAGGAAATCTATATACAAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 Ank_5 PGG

Protein Analysis

327

Amino Acids

36.23

Weight (kDa)

6.27

Isoelectric Point (pI)

36.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 10 - 89 4.5e-07 Ankyrin repeats (3 copies)
Ank_2 PF12796 35 - 144 9.3e-14 Ankyrin repeats (3 copies)
Ank PF00023 67 - 88 8.4e-06 Ankyrin repeat
Ank_4 PF13637 71 - 141 2.6e-06 Ankyrin repeats (many copies)
Ank_2 PF12796 111 - 170 1.1e-07 Ankyrin repeats (3 copies)
Ank_5 PF13857 114 - 159 5.9e-07 Ankyrin repeats (many copies)
Ank_2 PF12796 187 - 246 2.9e-07 Ankyrin repeats (3 copies)
Ank_2 PF12796 192 - 279 1.5e-11 Ankyrin repeats (3 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000319)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18590 FvH4_1g18590 FvH4_3g16140 FvH4_3g16141 FvH4_3g16160
malus_domestica MD02G1193600.v1.1 MD04G1020900.v1.1 MD04G1021000.v1.1 MD05G1212100.v1.1 MD05G1212300.v1.1 MD05G1213100.v1.1 MD05G1213400.v1.1 MD10G1197300.v1.1
prunus_persica Prupe.4G144500_v2.0.a1 Prupe.4G144600_v2.0.a1 Prupe.4G144800_v2.0.a1 Prupe.4G144900_v2.0.a1 Prupe.4G145100_v2.0.a1 Prupe.4G145300_v2.0.a1
pyrus_communis pycom02g15730 pycom02g15740 pycom05g19670 pycom05g19680 pycom10g17020 pycom11g27250
rosa_chinensis RchiOBHm_Chr2g0109301 RchiOBHm_Chr2g0109321 RchiOBHm_Chr2g0109341 RchiOBHm_Chr2g0109381 RchiOBHm_Chr3g0482301 RchiOBHm_Chr5g0027111 RchiOBHm_Chr5g0027121 RchiOBHm_Chr5g0027141 RchiOBHm_Chr5g0027181 RchiOBHm_Chr5g0027241
rosa_laevigata RLG00000017731 RLG00000017732 RLG00000032990 RLG00000032992 RLG00000032993 RLG00000032995 RLG00000032997 RLG00000033002
rosa_multiflora Rmu_sc0000135.1_g000002 Rmu_sc0000332.1_g000010 Rmu_sc0000882.1_g000028 Rmu_sc0000882.1_g000032 Rmu_sc0000882.1_g000033 Rmu_sc0000882.1_g000039 Rmu_sc0000882.1_g000043 Rmu_sc0000882.1_g000046 Rmu_sc0006065.1_g000003 Rmu_sc0006065.1_g000012 Rmu_sc0006065.1_g000018 Rmu_sc0006065.1_g000019 Rmu_sc0006065.1_g000022 Rmu_sc0007497.1_g000002 Rmu_sc0013610.1_g000011 Rmu_sc0015338.1_g000006 Rmu_ssc0000357.1_g000035
rosa_roxburghii Rroxscaffold_1G00052250 Rroxscaffold_1G00052280 Rroxscaffold_1G00052290 Rroxscaffold_1G00052310 Rroxscaffold_1G00052330 Rroxscaffold_1G00052360 Rroxscaffold_1G00052380 Rroxscaffold_1G00052390 Rroxscaffold_2G00134310 Rroxscaffold_2G00134330
rosa_rugosa Rorug02G0159400 Rorug05G0097300 Rorug05G0097500 Rorug05G0097600 Rorug05G0097700 Rorug05G0097700 Rorug05G0097700 Rorug05G0122900
rosa_samantha Rh2AG210900 Rh2AG211200 Rh2AG211500 Rh2BG221200 Rh2BG221800 Rh2CG213100 Rh2CG213200 Rh2CG213600 Rh3CG277900 Rh3CG278000 Rh3CG278600 Rh3DG274600 Rh5BG188600 Rh5BG188700 Rh5BG188900 Rh5BG189100 Rh5BG189200 Rh5BG189400 Rh5CG208400 Rh5CG208500 Rh5CG208700 Rh5CG209000 Rh5CG209100 Rh5CG209400 Rh5CG209700 Rh5CG209800 Rh5CG209900 Rh5CG210000 Rh5DG190500 Rh5DG190700 Rh5DG191200 Rh5DG191500
rosa_wichuraiana Rw3G022160 Rw5G017410 Rw5G017420 Rw5G017450 Rw5G017460 Rw5G017470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 844
AccB1I GGYRCC 1 cut(s) 65
AccBSI CCGCTC 1 cut(s) 785
AccI GTMKAC 1 cut(s) 844
AciI CCGC 4 cut(s) 114, 582, 783, 797
AclI AACGTT 1 cut(s) 711
AclWI GGATC 3 cut(s) 12, 563, 633
AcsI RAATTY 2 cut(s) 119, 134
AcuI CTGAAG 1 cut(s) 630
AcyI GRCGYC 3 cut(s) 66, 83, 841
AfaI GTAC 2 cut(s) 537, 745
AfiI CCNNNNNNNGG 2 cut(s) 75, 796
AgsI TTSAA 5 cut(s) 124, 142, 344, 551, 716
AluBI AGCT 9 cut(s) 13, 175, 293, 326, 415, 512, 572, 608, 719
AluI AGCT 9 cut(s) 13, 175, 293, 326, 415, 512, 572, 608, 719
Alw26I GTCTC 1 cut(s) 641
AlwI GGATC 3 cut(s) 12, 563, 633
AoxI GGCC 4 cut(s) 183, 426, 798, 808
ApeKI GCWGC 4 cut(s) 221, 277, 509, 695
ApoI RAATTY 2 cut(s) 119, 134
AspLEI GCGC 1 cut(s) 68
AspS9I GGNCC 1 cut(s) 183
AsuHPI GGTGA 3 cut(s) 47, 212, 332
AsuII TTCGAA 1 cut(s) 402
BamHI GGATCC 1 cut(s) 4
BanI GGYRCC 1 cut(s) 65
BbsI GAAGAC 1 cut(s) 86
BbvI GCAGC 4 cut(s) 208, 264, 521, 682
BccI CCATC 2 cut(s) 311, 944
BceAI ACGGC 3 cut(s) 170, 384, 569
BcgI CGANNNNNNTGC 2 cut(s) 259, 293
BciVI GTATCC 1 cut(s) 651
BclI TGATCA 3 cut(s) 262, 295, 664
BcoDI GTCTC 1 cut(s) 641
BfaI CTAG 2 cut(s) 503, 720
BfmI CTRYAG 1 cut(s) 897
BfoI RGCGCY 1 cut(s) 69
BfuI GTATCC 1 cut(s) 651
BglII AGATCT 2 cut(s) 45, 770
BisI GCNGC 7 cut(s) 114, 222, 278, 510, 582, 696, 798
BlsI GCNGC 7 cut(s) 115, 223, 279, 511, 583, 697, 799
BmcAI AGTACT 1 cut(s) 745
BmgT120I GGNCC 1 cut(s) 183
BmiI GGNNCC 2 cut(s) 6, 67
BpiI GAAGAC 1 cut(s) 86
Bpu10I CCTNAGC 1 cut(s) 9
Bpu14I TTCGAA 1 cut(s) 402
BsaHI GRCGYC 3 cut(s) 66, 83, 841
Bsc4I CCNNNNNNNGG 2 cut(s) 75, 796
Bse118I RCCGGY 2 cut(s) 68, 230
Bse1I ACTGG 2 cut(s) 159, 945
Bse3DI GCAATG 1 cut(s) 244
BseLI CCNNNNNNNGG 2 cut(s) 75, 796
BseMI GCAATG 1 cut(s) 244
BseMII CTCAG 1 cut(s) 636
BseNI ACTGG 2 cut(s) 159, 945
BseRI GAGGAG 1 cut(s) 924
BseXI GCAGC 4 cut(s) 208, 264, 521, 682
BsgI GTGCAG 2 cut(s) 197, 263
BshFI GGCC 4 cut(s) 185, 428, 800, 810
BshNI GGYRCC 1 cut(s) 65
BsiSI CCGG 2 cut(s) 69, 231
BslFI GGGAC 1 cut(s) 134
BslI CCNNNNNNNGG 2 cut(s) 75, 796
BsmAI GTCTC 1 cut(s) 641
BsmFI GGGAC 1 cut(s) 134
BsnI GGCC 4 cut(s) 185, 428, 800, 810
Bsp119I TTCGAA 1 cut(s) 402
Bsp143I GATC 8 cut(s) 4, 45, 262, 295, 555, 625, 664, 770
BspACI CCGC 4 cut(s) 114, 582, 783, 797
BspANI GGCC 4 cut(s) 185, 428, 800, 810
BspCNI CTCAG 1 cut(s) 637
BspLI GGNNCC 2 cut(s) 6, 67
BspMAI CTGCAG 1 cut(s) 901
BspPI GGATC 3 cut(s) 12, 563, 633
BspQI GCTCTTC 1 cut(s) 283
BspT104I TTCGAA 1 cut(s) 402
BspT107I GGYRCC 1 cut(s) 65
BsrBI CCGCTC 1 cut(s) 785
BsrDI GCAATG 1 cut(s) 244
BsrFI RCCGGY 2 cut(s) 68, 230
BsrI ACTGG 2 cut(s) 159, 945
BssAI RCCGGY 2 cut(s) 68, 230
BssMI GATC 8 cut(s) 4, 45, 262, 295, 555, 625, 664, 770
BssNI GRCGYC 3 cut(s) 66, 83, 841
Bst6I CTCTTC 2 cut(s) 283, 822
BstACI GRCGYC 3 cut(s) 66, 83, 841
BstBI TTCGAA 1 cut(s) 402
BstC8I GCNNGC 3 cut(s) 70, 579, 808
BstDEI CTNAG 3 cut(s) 9, 42, 645
BstH2I RGCGCY 1 cut(s) 69
BstHHI GCGC 1 cut(s) 68
BstKTI GATC 8 cut(s) 7, 48, 265, 298, 558, 628, 667, 773
BstMAI GTCTC 1 cut(s) 641
BstMBI GATC 8 cut(s) 4, 45, 262, 295, 555, 625, 664, 770
BstMWI GCNNNNNNNGC 4 cut(s) 227, 274, 578, 803
BstNSI RCATGY 2 cut(s) 380, 581
BstSFI CTRYAG 1 cut(s) 897
BstV1I GCAGC 4 cut(s) 208, 264, 521, 682
BstV2I GAAGAC 1 cut(s) 86
BstX2I RGATCY 4 cut(s) 4, 45, 625, 770
BstXI CCANNNNNNTGG 1 cut(s) 823
BstYI RGATCY 4 cut(s) 4, 45, 625, 770
BsuI GTATCC 1 cut(s) 651
BsuRI GGCC 4 cut(s) 185, 428, 800, 810
BtgZI GCGATG 1 cut(s) 94
BtsI GCAGTG 1 cut(s) 209
BtsIMutI CAGTG 2 cut(s) 152, 209
Cac8I GCNNGC 3 cut(s) 70, 579, 808
CfoI GCGC 1 cut(s) 68
Cfr10I RCCGGY 2 cut(s) 68, 230
Cfr13I GGNCC 1 cut(s) 183
CseI GACGC 1 cut(s) 91
Csp6I GTAC 2 cut(s) 536, 744
CspCI CAANNNNNGTGG 2 cut(s) 656, 691
CviAII CATG 4 cut(s) 377, 578, 791, 904
CviQI GTAC 2 cut(s) 536, 744
DdeI CTNAG 3 cut(s) 9, 42, 645
DinI GGCGCC 1 cut(s) 67
DpnI GATC 8 cut(s) 6, 47, 264, 297, 557, 627, 666, 772
DpnII GATC 8 cut(s) 4, 45, 262, 295, 555, 625, 664, 770
Eam1104I CTCTTC 2 cut(s) 283, 822
EarI CTCTTC 2 cut(s) 283, 822
Eco32I GATATC 1 cut(s) 392
Eco57I CTGAAG 1 cut(s) 630
EcoRI GAATTC 2 cut(s) 119, 134
EcoRV GATATC 1 cut(s) 392
EgeI GGCGCC 1 cut(s) 67
EheI GGCGCC 1 cut(s) 67
FaeI CATG 4 cut(s) 380, 581, 794, 907
FaqI GGGAC 1 cut(s) 134
FatI CATG 4 cut(s) 376, 577, 790, 903
FbaI TGATCA 3 cut(s) 262, 295, 664
FblI GTMKAC 1 cut(s) 844
Fnu4HI GCNGC 7 cut(s) 114, 222, 278, 510, 582, 696, 798
Fsp4HI GCNGC 7 cut(s) 114, 222, 278, 510, 582, 696, 798
FspBI CTAG 2 cut(s) 503, 720
GlaI GCGC 1 cut(s) 67
GluI GCNGC 7 cut(s) 114, 222, 278, 510, 582, 696, 798
HaeII RGCGCY 1 cut(s) 69
HaeIII GGCC 4 cut(s) 185, 428, 800, 810
HapII CCGG 2 cut(s) 69, 231
HgaI GACGC 1 cut(s) 91
HhaI GCGC 1 cut(s) 68
Hin1I GRCGYC 3 cut(s) 66, 83, 841
Hin1II CATG 4 cut(s) 380, 581, 794, 907
Hin6I GCGC 1 cut(s) 66
HinP1I GCGC 1 cut(s) 66
HincII GTYRAC 2 cut(s) 190, 845
HindII GTYRAC 2 cut(s) 190, 845
HinfI GANTC 3 cut(s) 358, 467, 851
HpaII CCGG 2 cut(s) 69, 231
HphI GGTGA 3 cut(s) 47, 212, 332
Hpy166II GTNNAC 4 cut(s) 190, 446, 678, 845
Hpy188III TCNNGA 7 cut(s) 8, 299, 362, 494, 619, 644, 774
Hpy8I GTNNAC 4 cut(s) 190, 446, 678, 845
Hpy99I CGWCG 3 cut(s) 485, 843, 846
HpyAV CCTTC 3 cut(s) 190, 545, 616
HpyCH4IV ACGT 3 cut(s) 216, 711, 841
HpyCH4V TGCA 9 cut(s) 214, 237, 280, 376, 577, 698, 736, 806, 899
HpyF10VI GCNNNNNNNGC 4 cut(s) 227, 274, 578, 803
HpyF3I CTNAG 3 cut(s) 9, 42, 645
HpySE526I ACGT 3 cut(s) 216, 711, 841
Hsp92I GRCGYC 3 cut(s) 66, 83, 841
Hsp92II CATG 4 cut(s) 380, 581, 794, 907
HspAI GCGC 1 cut(s) 66
KasI GGCGCC 1 cut(s) 65
KroI GCCGGC 1 cut(s) 68
KroNI GCCGGC 1 cut(s) 70
Ksp22I TGATCA 3 cut(s) 262, 295, 664
Kzo9I GATC 8 cut(s) 4, 45, 262, 295, 555, 625, 664, 770
LguI GCTCTTC 1 cut(s) 283
Lsp1109I GCAGC 4 cut(s) 208, 264, 521, 682
MaeI CTAG 2 cut(s) 503, 720
MaeII ACGT 3 cut(s) 216, 711, 841
MaeIII GTNAC 7 cut(s) 25, 200, 395, 565, 751, 857, 943
MalI GATC 8 cut(s) 6, 47, 264, 297, 557, 627, 666, 772
MbiI CCGCTC 1 cut(s) 785
MboI GATC 8 cut(s) 4, 45, 262, 295, 555, 625, 664, 770
MboII GAAGA 6 cut(s) 66, 91, 130, 300, 839, 881
MflI RGATCY 4 cut(s) 4, 45, 625, 770
MluCI AATT 3 cut(s) 57, 119, 134
Mly113I GGCGCC 1 cut(s) 66
MmeI TCCRAC 1 cut(s) 486
MnlI CCTC 8 cut(s) 13, 56, 299, 418, 444, 549, 902, 910
MreI CGCCGGCG 1 cut(s) 68
MroNI GCCGGC 1 cut(s) 68
MseI TTAA 2 cut(s) 588, 701
MspA1I CMGCKG 2 cut(s) 116, 512
MspI CCGG 2 cut(s) 69, 231
MwoI GCNNNNNNNGC 4 cut(s) 227, 274, 578, 803
NaeI GCCGGC 1 cut(s) 70
NarI GGCGCC 1 cut(s) 66
NdeII GATC 8 cut(s) 4, 45, 262, 295, 555, 625, 664, 770
NgoMIV GCCGGC 1 cut(s) 68
NlaIII CATG 4 cut(s) 380, 581, 794, 907
NlaIV GGNNCC 2 cut(s) 6, 67
NmuCI GTSAC 5 cut(s) 25, 200, 395, 565, 857
NspI RCATGY 2 cut(s) 380, 581
NspV TTCGAA 1 cut(s) 402
PaeI GCATGC 1 cut(s) 581
PciSI GCTCTTC 1 cut(s) 283
PdiI GCCGGC 1 cut(s) 70
PfeI GAWTC 3 cut(s) 358, 467, 851
PkrI GCNGC 7 cut(s) 115, 223, 279, 511, 583, 697, 799
PluTI GGCGCC 1 cut(s) 69
Psp1406I AACGTT 1 cut(s) 711
PspN4I GGNNCC 2 cut(s) 6, 67
PspPI GGNCC 1 cut(s) 183
PstI CTGCAG 1 cut(s) 901
PsuI RGATCY 4 cut(s) 4, 45, 625, 770
PvuII CAGCTG 1 cut(s) 512
RsaI GTAC 2 cut(s) 537, 745
RsaNI GTAC 2 cut(s) 536, 744
SalI GTCGAC 1 cut(s) 843
SapI GCTCTTC 1 cut(s) 283
SaqAI TTAA 2 cut(s) 588, 701
SatI GCNGC 7 cut(s) 114, 222, 278, 510, 582, 696, 798
Sau3AI GATC 8 cut(s) 4, 45, 262, 295, 555, 625, 664, 770
Sau96I GGNCC 1 cut(s) 183
ScaI AGTACT 1 cut(s) 745
SfcI CTRYAG 1 cut(s) 897
SfoI GGCGCC 1 cut(s) 67
SfuI TTCGAA 1 cut(s) 402
SgrAI CRCCGGYG 1 cut(s) 68
SphI GCATGC 1 cut(s) 581
Sse9I AATT 3 cut(s) 57, 119, 134
SsiI CCGC 4 cut(s) 114, 582, 783, 797
SspDI GGCGCC 1 cut(s) 65
SspI AATATT 1 cut(s) 100
SspMI CTAG 2 cut(s) 503, 720
TaiI ACGT 3 cut(s) 219, 714, 844
TaqI TCGA 5 cut(s) 388, 402, 724, 838, 844
TasI AATT 3 cut(s) 57, 119, 134
TatI WGTACW 1 cut(s) 743
TauI GCSGC 3 cut(s) 116, 584, 800
TfiI GAWTC 3 cut(s) 358, 467, 851
Tru1I TTAA 2 cut(s) 588, 701
Tru9I TTAA 2 cut(s) 588, 701
TscAI CASTG 2 cut(s) 159, 216
TseFI GTSAC 5 cut(s) 25, 200, 395, 565, 857
TseI GCWGC 4 cut(s) 221, 277, 509, 695
Tsp45I GTSAC 5 cut(s) 25, 200, 395, 565, 857
TspDTI ATGAA 3 cut(s) 255, 511, 881
TspGWI ACGGA 1 cut(s) 531
TspRI CASTG 2 cut(s) 159, 216
XapI RAATTY 2 cut(s) 119, 134
XceI RCATGY 2 cut(s) 380, 581
XmiI GTMKAC 1 cut(s) 844
XspI CTAG 2 cut(s) 503, 720
ZraI GACGTC 1 cut(s) 842
ZrmI AGTACT 1 cut(s) 745
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.