RchiOBHm_Chr2g0109321

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000319
Physical Location & Seq
Forward (+)
20722036 .. 20722770
735 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ48316

Sequence Viewer

Length: 735 bp
ATGCATATAATGAGAAAAAATGTTATGGAAGGATTCTCAGTACCTGAGCTATTTTGTCCATACATGTTAGACATCGTGACGATGATGGTGTCCAAAAATCCTGAAATAATCAAAGAAGTTGATGAACTTGGTTGGACTCCCTTACACTATGCAGCATTCAGAGGGAATGTATCGGCAATTAGATCGCTGATAAAACGTAACAGTTCTGTAGCTTACATATTAGACAACTGTGGAATGTCTGCTCTTCATGTTGCAGCGTACGGAGGCCACATAAAAGTAATGAAAGAATTGATTCGATTGCGGCCTGATACTTGTGATCTGCTCAACCACAAAGACCAAACGGCTGTACATGCTGCAGTTTTGGGTGAGAAGCCGGCTGTTATTAGGTATATTTTGAAGACGCCTACTCTAGCAGGACTTGTAAACGAAGCAGACGATGATGGAAATACTCCTTTACATCTGGCTGCCTCTATACCGAATTCTGCAATTATGAAAGCCTTGGCAAGGGATTGCAAAGTTGACAAGACTGCAACCAATGTTCACCACTCCAAAGCGGTTGATATATACCTTGGTAACAATATTGAACTGGTAAGGACCATAGATATATATAACACACACAGGGCCCTTGTAGTGAGAGATTCATTTTTTAGTTATTTTCAGGGATCGATTATTAGACCCACTTTTCGATCACGTATCCATATCTCAACTGTTCAGTTTTTAGGTCTATATGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_4 Ank_5 PGG

Protein Analysis

244

Amino Acids

27.29

Weight (kDa)

8.62

Isoelectric Point (pI)

36.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 23 - 99 3.5e-12 Ankyrin repeats (3 copies)
Ank_4 PF13637 55 - 95 1.5e-06 Ankyrin repeats (many copies)
Ank_2 PF12796 95 - 177 8.3e-08 Ankyrin repeats (3 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000319)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18590 FvH4_1g18590 FvH4_3g16140 FvH4_3g16141 FvH4_3g16160
malus_domestica MD02G1193600.v1.1 MD04G1020900.v1.1 MD04G1021000.v1.1 MD05G1212100.v1.1 MD05G1212300.v1.1 MD05G1213100.v1.1 MD05G1213400.v1.1 MD10G1197300.v1.1
prunus_persica Prupe.4G144500_v2.0.a1 Prupe.4G144600_v2.0.a1 Prupe.4G144800_v2.0.a1 Prupe.4G144900_v2.0.a1 Prupe.4G145100_v2.0.a1 Prupe.4G145300_v2.0.a1
pyrus_communis pycom02g15730 pycom02g15740 pycom05g19670 pycom05g19680 pycom10g17020 pycom11g27250
rosa_chinensis RchiOBHm_Chr2g0109301 RchiOBHm_Chr2g0109321 RchiOBHm_Chr2g0109341 RchiOBHm_Chr2g0109381 RchiOBHm_Chr3g0482301 RchiOBHm_Chr5g0027111 RchiOBHm_Chr5g0027121 RchiOBHm_Chr5g0027141 RchiOBHm_Chr5g0027181 RchiOBHm_Chr5g0027241
rosa_laevigata RLG00000017731 RLG00000017732 RLG00000032990 RLG00000032992 RLG00000032993 RLG00000032995 RLG00000032997 RLG00000033002
rosa_multiflora Rmu_sc0000135.1_g000002 Rmu_sc0000332.1_g000010 Rmu_sc0000882.1_g000028 Rmu_sc0000882.1_g000032 Rmu_sc0000882.1_g000033 Rmu_sc0000882.1_g000039 Rmu_sc0000882.1_g000043 Rmu_sc0000882.1_g000046 Rmu_sc0006065.1_g000003 Rmu_sc0006065.1_g000012 Rmu_sc0006065.1_g000018 Rmu_sc0006065.1_g000019 Rmu_sc0006065.1_g000022 Rmu_sc0007497.1_g000002 Rmu_sc0013610.1_g000011 Rmu_sc0015338.1_g000006 Rmu_ssc0000357.1_g000035
rosa_roxburghii Rroxscaffold_1G00052250 Rroxscaffold_1G00052280 Rroxscaffold_1G00052290 Rroxscaffold_1G00052310 Rroxscaffold_1G00052330 Rroxscaffold_1G00052360 Rroxscaffold_1G00052380 Rroxscaffold_1G00052390 Rroxscaffold_2G00134310 Rroxscaffold_2G00134330
rosa_rugosa Rorug02G0159400 Rorug05G0097300 Rorug05G0097500 Rorug05G0097600 Rorug05G0097700 Rorug05G0097700 Rorug05G0097700 Rorug05G0122900
rosa_samantha Rh2AG210900 Rh2AG211200 Rh2AG211500 Rh2BG221200 Rh2BG221800 Rh2CG213100 Rh2CG213200 Rh2CG213600 Rh3CG277900 Rh3CG278000 Rh3CG278600 Rh3DG274600 Rh5BG188600 Rh5BG188700 Rh5BG188900 Rh5BG189100 Rh5BG189200 Rh5BG189400 Rh5CG208400 Rh5CG208500 Rh5CG208700 Rh5CG209000 Rh5CG209100 Rh5CG209400 Rh5CG209700 Rh5CG209800 Rh5CG209900 Rh5CG210000 Rh5DG190500 Rh5DG190700 Rh5DG191200 Rh5DG191500
rosa_wichuraiana Rw3G022160 Rw5G017410 Rw5G017420 Rw5G017450 Rw5G017460 Rw5G017470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 301, 554
AclWI GGATC 1 cut(s) 670
AcsI RAATTY 1 cut(s) 478
AcyI GRCGYC 1 cut(s) 401
AfaI GTAC 3 cut(s) 42, 260, 348
AfiI CCNNNNNNNGG 1 cut(s) 504
AflIII ACRYGT 1 cut(s) 63
AgsI TTSAA 2 cut(s) 397, 584
AluBI AGCT 2 cut(s) 49, 212
AluI AGCT 2 cut(s) 49, 212
AlwI GGATC 1 cut(s) 670
AlwNI CAGNNNCTG 1 cut(s) 44
AoxI GGCC 3 cut(s) 265, 302, 621
ApaI GGGCCC 1 cut(s) 625
ApeKI GCWGC 4 cut(s) 152, 254, 353, 464
ApoI RAATTY 1 cut(s) 478
ArsI GACNNNNNNTTYG 2 cut(s) 666, 698
Asp700I GAANNNNTTC 1 cut(s) 291
AspS9I GGNCC 3 cut(s) 594, 621, 622
AsuHPI GGTGA 2 cut(s) 377, 533
AvaII GGWCC 1 cut(s) 594
BaeGI GKGCMC 1 cut(s) 625
BanII GRGCYC 1 cut(s) 625
BbsI GAAGAC 1 cut(s) 404
BbvI GCAGC 4 cut(s) 164, 266, 340, 451
BccI CCATC 2 cut(s) 79, 434
BceAI ACGGC 1 cut(s) 357
BcgI CGANNNNNNTGC 2 cut(s) 165, 199
BciVI GTATCC 1 cut(s) 704
BfaI CTAG 1 cut(s) 410
BfmI CTRYAG 2 cut(s) 207, 354
BfuI GTATCC 1 cut(s) 704
BisI GCNGC 5 cut(s) 153, 255, 302, 354, 465
BlsI GCNGC 5 cut(s) 154, 256, 303, 355, 466
Bme18I GGWCC 1 cut(s) 594
BmgT120I GGNCC 3 cut(s) 594, 621, 622
BmiI GGNNCC 1 cut(s) 623
BpiI GAAGAC 1 cut(s) 404
Bpu10I CCTNAGC 1 cut(s) 45
Bsa29I ATCGAT 1 cut(s) 665
BsaAI YACGTR 1 cut(s) 692
BsaHI GRCGYC 1 cut(s) 401
BsaJI CCNNGG 2 cut(s) 498, 568
Bsc4I CCNNNNNNNGG 1 cut(s) 504
Bse118I RCCGGY 1 cut(s) 373
Bse1I ACTGG 1 cut(s) 591
BseCI ATCGAT 1 cut(s) 665
BseDI CCNNGG 2 cut(s) 498, 568
BseLI CCNNNNNNNGG 1 cut(s) 504
BseMII CTCAG 2 cut(s) 36, 51
BseNI ACTGG 1 cut(s) 591
BseSI GKGCMC 1 cut(s) 625
BseXI GCAGC 4 cut(s) 164, 266, 340, 451
BshFI GGCC 3 cut(s) 267, 304, 623
BshVI ATCGAT 1 cut(s) 665
BsiSI CCGG 1 cut(s) 374
BsiWI CGTACG 1 cut(s) 258
BslI CCNNNNNNNGG 1 cut(s) 504
BsmI GAATGC 1 cut(s) 155
BsnI GGCC 3 cut(s) 267, 304, 623
Bsp120I GGGCCC 1 cut(s) 621
Bsp1286I GDGCHC 1 cut(s) 625
Bsp1407I TGTACA 1 cut(s) 346
Bsp143I GATC 4 cut(s) 182, 316, 662, 686
BspACI CCGC 2 cut(s) 301, 554
BspANI GGCC 3 cut(s) 267, 304, 623
BspCNI CTCAG 2 cut(s) 37, 50
BspDI ATCGAT 1 cut(s) 665
BspLI GGNNCC 1 cut(s) 623
BspMAI CTGCAG 1 cut(s) 358
BspPI GGATC 1 cut(s) 670
BspQI GCTCTTC 1 cut(s) 249
BsrFI RCCGGY 1 cut(s) 373
BsrGI TGTACA 1 cut(s) 346
BsrI ACTGG 1 cut(s) 591
BssAI RCCGGY 1 cut(s) 373
BssECI CCNNGG 2 cut(s) 498, 568
BssMI GATC 4 cut(s) 182, 316, 662, 686
BssNI GRCGYC 1 cut(s) 401
BssT1I CCWWGG 2 cut(s) 498, 568
Bst4CI ACNGT 3 cut(s) 203, 230, 709
Bst6I CTCTTC 1 cut(s) 249
BstACI GRCGYC 1 cut(s) 401
BstAUI TGTACA 1 cut(s) 346
BstBAI YACGTR 1 cut(s) 692
BstC8I GCNNGC 1 cut(s) 375
BstDEI CTNAG 2 cut(s) 37, 45
BstENI CCTNNNNNAGG 1 cut(s) 502
BstKTI GATC 4 cut(s) 185, 319, 665, 689
BstMBI GATC 4 cut(s) 182, 316, 662, 686
BstMWI GCNNNNNNNGC 1 cut(s) 350
BstNSI RCATGY 2 cut(s) 67, 353
BstSFI CTRYAG 2 cut(s) 207, 354
BstSLI GKGCMC 1 cut(s) 625
BstV1I GCAGC 4 cut(s) 164, 266, 340, 451
BstV2I GAAGAC 1 cut(s) 404
Bsu15I ATCGAT 1 cut(s) 665
BsuI GTATCC 1 cut(s) 704
BsuRI GGCC 3 cut(s) 267, 304, 623
BsuTUI ATCGAT 1 cut(s) 665
Cac8I GCNNGC 1 cut(s) 375
CaiI CAGNNNCTG 1 cut(s) 44
Cfr10I RCCGGY 1 cut(s) 373
Cfr13I GGNCC 3 cut(s) 594, 621, 622
ClaI ATCGAT 1 cut(s) 665
CseI GACGC 1 cut(s) 409
Csp6I GTAC 3 cut(s) 41, 259, 347
CviAII CATG 3 cut(s) 64, 248, 350
CviQI GTAC 3 cut(s) 41, 259, 347
DdeI CTNAG 2 cut(s) 37, 45
DpnI GATC 4 cut(s) 184, 318, 664, 688
DpnII GATC 4 cut(s) 182, 316, 662, 686
Eam1104I CTCTTC 1 cut(s) 249
EarI CTCTTC 1 cut(s) 249
Eco130I CCWWGG 2 cut(s) 498, 568
Eco24I GRGCYC 1 cut(s) 625
Eco47I GGWCC 1 cut(s) 594
EcoNI CCTNNNNNAGG 1 cut(s) 502
EcoO109I RGGNCCY 2 cut(s) 621, 622
EcoRI GAATTC 1 cut(s) 478
EcoT14I CCWWGG 2 cut(s) 498, 568
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 625
ErhI CCWWGG 2 cut(s) 498, 568
FaeI CATG 3 cut(s) 67, 251, 353
FatI CATG 3 cut(s) 63, 247, 349
Fnu4HI GCNGC 5 cut(s) 153, 255, 302, 354, 465
FriOI GRGCYC 1 cut(s) 625
Fsp4HI GCNGC 5 cut(s) 153, 255, 302, 354, 465
FspBI CTAG 1 cut(s) 410
GluI GCNGC 5 cut(s) 153, 255, 302, 354, 465
HaeIII GGCC 3 cut(s) 267, 304, 623
HapII CCGG 1 cut(s) 374
HgaI GACGC 1 cut(s) 409
Hin1I GRCGYC 1 cut(s) 401
Hin1II CATG 3 cut(s) 67, 251, 353
HincII GTYRAC 1 cut(s) 520
HindII GTYRAC 1 cut(s) 520
HinfI GANTC 4 cut(s) 33, 136, 292, 638
HpaII CCGG 1 cut(s) 374
HphI GGTGA 2 cut(s) 377, 533
Hpy166II GTNNAC 3 cut(s) 424, 520, 541
Hpy188I TCNGA 1 cut(s) 161
Hpy188III TCNNGA 2 cut(s) 76, 101
Hpy8I GTNNAC 3 cut(s) 424, 520, 541
HpyAV CCTTC 1 cut(s) 23
HpyCH4III ACNGT 3 cut(s) 203, 230, 709
HpyCH4IV ACGT 2 cut(s) 196, 691
HpyCH4V TGCA 7 cut(s) 4, 152, 254, 356, 485, 513, 530
HpyF10VI GCNNNNNNNGC 1 cut(s) 350
HpyF3I CTNAG 2 cut(s) 37, 45
HpySE526I ACGT 2 cut(s) 196, 691
Hsp92I GRCGYC 1 cut(s) 401
Hsp92II CATG 3 cut(s) 67, 251, 353
KroI GCCGGC 1 cut(s) 373
KroNI GCCGGC 1 cut(s) 375
Kzo9I GATC 4 cut(s) 182, 316, 662, 686
LguI GCTCTTC 1 cut(s) 249
LpnPI CCDG 9 cut(s) 57, 114, 318, 387, 399, 446, 572, 604, 644
Lsp1109I GCAGC 4 cut(s) 164, 266, 340, 451
MaeI CTAG 1 cut(s) 410
MaeII ACGT 2 cut(s) 196, 691
MaeIII GTNAC 3 cut(s) 76, 197, 572
MalI GATC 4 cut(s) 184, 318, 664, 688
MboI GATC 4 cut(s) 182, 316, 662, 686
MboII GAAGA 2 cut(s) 236, 409
MhlI GDGCHC 1 cut(s) 625
MluCI AATT 4 cut(s) 177, 287, 478, 486
MlyI GAGTC 1 cut(s) 130
MmeI TCCRAC 1 cut(s) 113
MnlI CCTC 3 cut(s) 155, 257, 478
Mph1103I ATGCAT 1 cut(s) 6
MroNI GCCGGC 1 cut(s) 373
MroXI GAANNNNTTC 1 cut(s) 291
MspI CCGG 1 cut(s) 374
Mva1269I GAATGC 1 cut(s) 155
MwoI GCNNNNNNNGC 1 cut(s) 350
NaeI GCCGGC 1 cut(s) 375
NdeII GATC 4 cut(s) 182, 316, 662, 686
NgoMIV GCCGGC 1 cut(s) 373
NlaIII CATG 3 cut(s) 67, 251, 353
NlaIV GGNNCC 1 cut(s) 623
NmuCI GTSAC 1 cut(s) 76
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 2 cut(s) 67, 353
PciI ACATGT 1 cut(s) 63
PciSI GCTCTTC 1 cut(s) 249
PcsI WCGNNNNNNNCGW 1 cut(s) 432
PctI GAATGC 1 cut(s) 155
PdiI GCCGGC 1 cut(s) 375
PdmI GAANNNNTTC 1 cut(s) 291
PfeI GAWTC 3 cut(s) 33, 292, 638
Pfl23II CGTACG 1 cut(s) 258
PkrI GCNGC 5 cut(s) 154, 256, 303, 355, 466
PleI GAGTC 1 cut(s) 130
PpsI GAGTC 1 cut(s) 130
Ppu21I YACGTR 1 cut(s) 692
PscI ACATGT 1 cut(s) 63
PspLI CGTACG 1 cut(s) 258
PspN4I GGNNCC 1 cut(s) 623
PspOMI GGGCCC 1 cut(s) 621
PspPI GGNCC 3 cut(s) 594, 621, 622
PstI CTGCAG 1 cut(s) 358
PstNI CAGNNNCTG 1 cut(s) 44
RsaI GTAC 3 cut(s) 42, 260, 348
RsaNI GTAC 3 cut(s) 41, 259, 347
SapI GCTCTTC 1 cut(s) 249
SatI GCNGC 5 cut(s) 153, 255, 302, 354, 465
Sau3AI GATC 4 cut(s) 182, 316, 662, 686
Sau96I GGNCC 3 cut(s) 594, 621, 622
SchI GAGTC 1 cut(s) 130
SduI GDGCHC 1 cut(s) 625
SetI ASST 8 cut(s) 46, 51, 199, 214, 389, 570, 694, 724
SfcI CTRYAG 2 cut(s) 207, 354
SinI GGWCC 1 cut(s) 594
Sse9I AATT 4 cut(s) 177, 287, 478, 486
SsiI CCGC 2 cut(s) 301, 554
SspI AATATT 1 cut(s) 580
SspMI CTAG 1 cut(s) 410
StyI CCWWGG 2 cut(s) 498, 568
TaaI ACNGT 3 cut(s) 203, 230, 709
TaiI ACGT 2 cut(s) 199, 694
TaqI TCGA 3 cut(s) 295, 665, 685
TasI AATT 4 cut(s) 177, 287, 478, 486
TatI WGTACW 1 cut(s) 346
TauI GCSGC 1 cut(s) 304
TfiI GAWTC 3 cut(s) 33, 292, 638
TseFI GTSAC 1 cut(s) 76
TseI GCWGC 4 cut(s) 152, 254, 353, 464
Tsp45I GTSAC 1 cut(s) 76
TspDTI ATGAA 5 cut(s) 138, 236, 296, 506, 630
TspGWI ACGGA 1 cut(s) 276
VpaK11BI GGWCC 1 cut(s) 594
XagI CCTNNNNNAGG 1 cut(s) 502
XapI RAATTY 1 cut(s) 478
XceI RCATGY 2 cut(s) 67, 353
XmnI GAANNNNTTC 1 cut(s) 291
XspI CTAG 1 cut(s) 410
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.