pycom02g15740

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0000319
Physical Location & Seq
Forward (+)
12728475 .. 12729763
1289 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g15740.1

Sequence Viewer

Length: 1128 bp
ATGATGGTTTCCAGGAACCCTGAAATAATCAAAGAAGTTGATGCCAATGGATGGACTCCATTACACTATGCAGCATTGACAGAGAACGTTAGAGCAACTCGATTATTGATGCAGCAAGATAGTTCTATTTCTTACATCTTGGACAACTCTGGAATGTCAGCTCTTCATGTTGCGGCATATGCAGGCCACCGGAGAGTGATGAAAGTGCTGACTCAATTCCGGCCTGATACTTGTGAATTGGTCAATCACAAAGGCCAAACGGTTCTGCATGCAGCAGTTTCAGGTAATCAACTTATTACTGTCAAATACATTTTGAGGACGACCAATTTTGCAAGACTTATAAATGAAGCAGACAACGACGGAAACACGCCCTTGCATCTAGCTGCTATTCAACGTGATGTTGAGGTCATACGAGTCATGGCAAGAGACCCTAGAGTGGATAATACTGCTATCAATAATCAACTCTTGAAGGCTGCTGACATTTTTCTTGGGGACAATATTGAACTGGACACCTTCGGTAGACGTGCGGTTTTGCAGCTTCTGGGCCGCTCTGTTGGTGTGCCAGTCTTCCAACAACAAATCCGCCTTGACTTTATGAAACTGGAATCACCGGAGAAAAGCGATACGCCAAACAGCATGTTGGACATTGCAGAGAAGAGAGCATTGCGAACTGATTGGGATGAATCGAGCAAGTTTGACACCCATCTAGTGGTAGCGATGCTTATTGCAACCGTCACGTTTGCAGCAGCTTTCACCCTGCCTGGAGGATTCAAAAGCAACGGAATGCCCGTCCTGTACAAAAGGGCAATTTTCCAAGTGTTTGTGGTATTCGACGCCATCTCCTTCTTTCTATCAATTTTAGTGGTGTTTAACCATTTTATGTTGGCAACTATCTCACGAACTGCTCTAGCGACACCTTCAGTTCTCATTCAGTACTCCATTGGAGGAATGGTAGTAGCATTTTCTTCAGGTATGCTCGTAGTGCTACCCATAAACAGTCCAGTTGGCATTCTGATCATTCTAGTATGCTGCGGAGTCTGTCTAATTATCATCAGAAGGTTCAGGTTTGCTATACCGCGCAAGCGCCAAATAAAGCGCCAGCAATGGCTCCGAACCCGCATACTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_4 Ank_5 PGG

Protein Analysis

376

Amino Acids

41.95

Weight (kDa)

9.72

Isoelectric Point (pI)

41.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 12 - 71 1.1e-10 Ankyrin repeats (3 copies)
Ank_2 PF12796 79 - 143 1.8e-09 Ankyrin repeats (3 copies)
PGG PF13962 232 - 327 2.8e-22 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000319)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18590 FvH4_1g18590 FvH4_3g16140 FvH4_3g16141 FvH4_3g16160
malus_domestica MD02G1193600.v1.1 MD04G1020900.v1.1 MD04G1021000.v1.1 MD05G1212100.v1.1 MD05G1212300.v1.1 MD05G1213100.v1.1 MD05G1213400.v1.1 MD10G1197300.v1.1
prunus_persica Prupe.4G144500_v2.0.a1 Prupe.4G144600_v2.0.a1 Prupe.4G144800_v2.0.a1 Prupe.4G144900_v2.0.a1 Prupe.4G145100_v2.0.a1 Prupe.4G145300_v2.0.a1
pyrus_communis pycom02g15730 pycom02g15740 pycom05g19670 pycom05g19680 pycom10g17020 pycom11g27250
rosa_chinensis RchiOBHm_Chr2g0109301 RchiOBHm_Chr2g0109321 RchiOBHm_Chr2g0109341 RchiOBHm_Chr2g0109381 RchiOBHm_Chr3g0482301 RchiOBHm_Chr5g0027111 RchiOBHm_Chr5g0027121 RchiOBHm_Chr5g0027141 RchiOBHm_Chr5g0027181 RchiOBHm_Chr5g0027241
rosa_laevigata RLG00000017731 RLG00000017732 RLG00000032990 RLG00000032992 RLG00000032993 RLG00000032995 RLG00000032997 RLG00000033002
rosa_multiflora Rmu_sc0000135.1_g000002 Rmu_sc0000332.1_g000010 Rmu_sc0000882.1_g000028 Rmu_sc0000882.1_g000032 Rmu_sc0000882.1_g000033 Rmu_sc0000882.1_g000039 Rmu_sc0000882.1_g000043 Rmu_sc0000882.1_g000046 Rmu_sc0006065.1_g000003 Rmu_sc0006065.1_g000012 Rmu_sc0006065.1_g000018 Rmu_sc0006065.1_g000019 Rmu_sc0006065.1_g000022 Rmu_sc0007497.1_g000002 Rmu_sc0013610.1_g000011 Rmu_sc0015338.1_g000006 Rmu_ssc0000357.1_g000035
rosa_roxburghii Rroxscaffold_1G00052250 Rroxscaffold_1G00052280 Rroxscaffold_1G00052290 Rroxscaffold_1G00052310 Rroxscaffold_1G00052330 Rroxscaffold_1G00052360 Rroxscaffold_1G00052380 Rroxscaffold_1G00052390 Rroxscaffold_2G00134310 Rroxscaffold_2G00134330
rosa_rugosa Rorug02G0159400 Rorug05G0097300 Rorug05G0097500 Rorug05G0097600 Rorug05G0097700 Rorug05G0097700 Rorug05G0097700 Rorug05G0122900
rosa_samantha Rh2AG210900 Rh2AG211200 Rh2AG211500 Rh2BG221200 Rh2BG221800 Rh2CG213100 Rh2CG213200 Rh2CG213600 Rh3CG277900 Rh3CG278000 Rh3CG278600 Rh3DG274600 Rh5BG188600 Rh5BG188700 Rh5BG188900 Rh5BG189100 Rh5BG189200 Rh5BG189400 Rh5CG208400 Rh5CG208500 Rh5CG208700 Rh5CG209000 Rh5CG209100 Rh5CG209400 Rh5CG209700 Rh5CG209800 Rh5CG209900 Rh5CG210000 Rh5DG190500 Rh5DG190700 Rh5DG191200 Rh5DG191500
rosa_wichuraiana Rw3G022160 Rw5G017410 Rw5G017420 Rw5G017450 Rw5G017460 Rw5G017470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 341
AccB7I CCANNNNNTGG 2 cut(s) 51, 709
AccBSI CCGCTC 1 cut(s) 549
AccI GTMKAC 1 cut(s) 520
AccII CGCG 1 cut(s) 1078
AciI CCGC 7 cut(s) 173, 527, 547, 583, 1032, 1076, 1117
AclI AACGTT 1 cut(s) 87
AcuI CTGAAG 2 cut(s) 903, 951
AcyI GRCGYC 1 cut(s) 834
AfaI GTAC 2 cut(s) 797, 935
AfiI CCNNNNNNNGG 3 cut(s) 51, 436, 709
AgsI TTSAA 4 cut(s) 392, 469, 503, 772
AjiI CACGTC 1 cut(s) 524
AjnI CCWGG 2 cut(s) 11, 760
AluBI AGCT 4 cut(s) 161, 383, 538, 749
AluI AGCT 4 cut(s) 161, 383, 538, 749
Alw26I GTCTC 1 cut(s) 420
AlwNI CAGNNNCTG 1 cut(s) 541
AoxI GGCC 4 cut(s) 184, 221, 253, 544
ApeKI GCWGC 9 cut(s) 71, 112, 272, 383, 473, 535, 743, 746, 1029
AspLEI GCGC 3 cut(s) 1080, 1086, 1098
AspS9I GGNCC 1 cut(s) 544
AsuHPI GGTGA 2 cut(s) 600, 745
BbsI GAAGAC 1 cut(s) 559
BbvI GCAGC 9 cut(s) 83, 124, 284, 370, 460, 547, 755, 758, 1016
BccI CCATC 3 cut(s) 45, 711, 845
BciT130I CCWGG 2 cut(s) 13, 762
BclI TGATCA 1 cut(s) 1014
BcoDI GTCTC 1 cut(s) 420
BfaI CTAG 5 cut(s) 380, 432, 707, 908, 1022
BfoI RGCGCY 2 cut(s) 1087, 1099
BmcAI AGTACT 1 cut(s) 935
Bme1390I CCNGG 2 cut(s) 13, 762
BmgBI CACGTC 1 cut(s) 524
BmgT120I GGNCC 1 cut(s) 544
BmiI GGNNCC 2 cut(s) 17, 1109
BmrFI CCNGG 2 cut(s) 13, 762
BmsI GCATC 4 cut(s) 31, 99, 385, 708
BpiI GAAGAC 1 cut(s) 559
BpmI CTGGAG 1 cut(s) 783
BsaHI GRCGYC 1 cut(s) 834
BsaI GGTCTC 1 cut(s) 420
BsaWI WCCGGW 2 cut(s) 189, 610
BsaXI ACNNNNNCTCC 4 cut(s) 824, 854, 936, 966
Bsc4I CCNNNNNNNGG 3 cut(s) 51, 436, 709
Bse1I ACTGG 4 cut(s) 510, 563, 606, 1001
Bse3DI GCAATG 3 cut(s) 645, 662, 1109
BseBI CCWGG 2 cut(s) 13, 762
BseGI GGATG 2 cut(s) 56, 685
BseLI CCNNNNNNNGG 3 cut(s) 51, 436, 709
BseMI GCAATG 3 cut(s) 645, 662, 1109
BseNI ACTGG 4 cut(s) 510, 563, 606, 1001
BseXI GCAGC 9 cut(s) 83, 124, 284, 370, 460, 547, 755, 758, 1016
Bsh1236I CGCG 1 cut(s) 1078
BshFI GGCC 4 cut(s) 186, 223, 255, 546
BsiSI CCGG 3 cut(s) 190, 220, 611
BslFI GGGAC 1 cut(s) 506
BslI CCNNNNNNNGG 3 cut(s) 51, 436, 709
BsmAI GTCTC 1 cut(s) 420
BsmFI GGGAC 1 cut(s) 506
BsmI GAATGC 2 cut(s) 789, 1008
BsnI GGCC 4 cut(s) 186, 223, 255, 546
Bso31I GGTCTC 1 cut(s) 420
Bsp1407I TGTACA 1 cut(s) 795
Bsp143I GATC 1 cut(s) 1014
BspACI CCGC 7 cut(s) 173, 527, 547, 583, 1032, 1076, 1117
BspANI GGCC 4 cut(s) 186, 223, 255, 546
BspFNI CGCG 1 cut(s) 1078
BspLI GGNNCC 2 cut(s) 17, 1109
BspQI GCTCTTC 1 cut(s) 168
BspTNI GGTCTC 1 cut(s) 420
BsrBI CCGCTC 1 cut(s) 549
BsrDI GCAATG 3 cut(s) 645, 662, 1109
BsrGI TGTACA 1 cut(s) 795
BsrI ACTGG 4 cut(s) 510, 563, 606, 1001
BssMI GATC 1 cut(s) 1014
BssNI GRCGYC 1 cut(s) 834
Bst2UI CCWGG 2 cut(s) 13, 762
Bst4CI ACNGT 4 cut(s) 262, 301, 733, 998
Bst6I CTCTTC 2 cut(s) 168, 650
BstACI GRCGYC 1 cut(s) 834
BstAUI TGTACA 1 cut(s) 795
BstC8I GCNNGC 4 cut(s) 184, 270, 1082, 1100
BstF5I GGATG 2 cut(s) 56, 685
BstFNI CGCG 1 cut(s) 1078
BstH2I RGCGCY 2 cut(s) 1087, 1099
BstHHI GCGC 3 cut(s) 1080, 1086, 1098
BstKTI GATC 1 cut(s) 1017
BstMAI GTCTC 1 cut(s) 420
BstMBI GATC 1 cut(s) 1014
BstMWI GCNNNNNNNGC 2 cut(s) 179, 982
BstNI CCWGG 2 cut(s) 13, 762
BstNSI RCATGY 2 cut(s) 272, 640
BstSCI CCNGG 2 cut(s) 11, 760
BstUI CGCG 1 cut(s) 1078
BstV1I GCAGC 9 cut(s) 83, 124, 284, 370, 460, 547, 755, 758, 1016
BstV2I GAAGAC 1 cut(s) 559
BsuRI GGCC 4 cut(s) 186, 223, 255, 546
BtgZI GCGATG 1 cut(s) 731
BtrI CACGTC 1 cut(s) 524
BtsCI GGATG 2 cut(s) 56, 685
Cac8I GCNNGC 4 cut(s) 184, 270, 1082, 1100
CaiI CAGNNNCTG 1 cut(s) 541
CfoI GCGC 3 cut(s) 1080, 1086, 1098
Cfr13I GGNCC 1 cut(s) 544
CseI GACGC 1 cut(s) 842
Csp6I GTAC 2 cut(s) 796, 934
CspCI CAANNNNNGTGG 2 cut(s) 843, 878
CviAII CATG 4 cut(s) 167, 269, 418, 637
CviQI GTAC 2 cut(s) 796, 934
DpnI GATC 1 cut(s) 1016
DpnII GATC 1 cut(s) 1014
Eam1104I CTCTTC 2 cut(s) 168, 650
EarI CTCTTC 2 cut(s) 168, 650
EciI GGCGGA 1 cut(s) 572
Eco31I GGTCTC 1 cut(s) 420
Eco57I CTGAAG 2 cut(s) 903, 951
EcoRII CCWGG 2 cut(s) 11, 760
FaeI CATG 4 cut(s) 170, 272, 421, 640
FaqI GGGAC 1 cut(s) 506
FatI CATG 4 cut(s) 166, 268, 417, 636
FauI CCCGC 1 cut(s) 1124
FauNDI CATATG 1 cut(s) 178
FbaI TGATCA 1 cut(s) 1014
FblI GTMKAC 1 cut(s) 520
FokI GGATG 2 cut(s) 63, 692
FspBI CTAG 5 cut(s) 380, 432, 707, 908, 1022
GlaI GCGC 3 cut(s) 1079, 1085, 1097
GsuI CTGGAG 1 cut(s) 783
HaeII RGCGCY 2 cut(s) 1087, 1099
HaeIII GGCC 4 cut(s) 186, 223, 255, 546
HapII CCGG 3 cut(s) 190, 220, 611
HgaI GACGC 1 cut(s) 842
HhaI GCGC 3 cut(s) 1080, 1086, 1098
Hin1I GRCGYC 1 cut(s) 834
Hin1II CATG 4 cut(s) 170, 272, 421, 640
Hin6I GCGC 3 cut(s) 1078, 1084, 1096
HinP1I GCGC 3 cut(s) 1078, 1084, 1096
HinfI GANTC 7 cut(s) 55, 211, 414, 605, 683, 768, 1035
HpaII CCGG 3 cut(s) 190, 220, 611
HphI GGTGA 2 cut(s) 600, 745
Hpy166II GTNNAC 1 cut(s) 521
Hpy188I TCNGA 4 cut(s) 1014, 1055, 1112, 1127
Hpy188III TCNNGA 3 cut(s) 150, 466, 897
Hpy8I GTNNAC 1 cut(s) 521
Hpy99I CGWCG 2 cut(s) 362, 836
HpyAV CCTTC 5 cut(s) 463, 523, 853, 927, 1050
HpyCH4III ACNGT 4 cut(s) 262, 301, 733, 998
HpyCH4IV ACGT 4 cut(s) 87, 394, 523, 737
HpyF10VI GCNNNNNNNGC 2 cut(s) 179, 982
HpySE526I ACGT 4 cut(s) 87, 394, 523, 737
Hsp92I GRCGYC 1 cut(s) 834
Hsp92II CATG 4 cut(s) 170, 272, 421, 640
HspAI GCGC 3 cut(s) 1078, 1084, 1096
Ksp22I TGATCA 1 cut(s) 1014
Kzo9I GATC 1 cut(s) 1014
LguI GCTCTTC 1 cut(s) 168
LmnI GCTCC 1 cut(s) 1113
Lsp1109I GCAGC 9 cut(s) 83, 124, 284, 370, 460, 547, 755, 758, 1016
LweI GCATC 4 cut(s) 31, 99, 385, 708
MaeI CTAG 5 cut(s) 380, 432, 707, 908, 1022
MaeII ACGT 4 cut(s) 87, 394, 523, 737
MaeIII GTNAC 1 cut(s) 733
MalI GATC 1 cut(s) 1016
MbiI CCGCTC 1 cut(s) 549
MboI GATC 1 cut(s) 1014
MboII GAAGA 4 cut(s) 155, 559, 667, 957
MluCI AATT 6 cut(s) 215, 236, 325, 807, 855, 1044
MlyI GAGTC 4 cut(s) 49, 205, 423, 1044
MmeI TCCRAC 2 cut(s) 595, 621
MnlI CCTC 4 cut(s) 309, 397, 758, 938
MseI TTAA 1 cut(s) 870
MspI CCGG 3 cut(s) 190, 220, 611
MspR9I CCNGG 2 cut(s) 13, 762
Mva1269I GAATGC 2 cut(s) 789, 1008
MvaI CCWGG 2 cut(s) 13, 762
MvnI CGCG 1 cut(s) 1078
MwoI GCNNNNNNNGC 2 cut(s) 179, 982
NdeI CATATG 1 cut(s) 178
NdeII GATC 1 cut(s) 1014
NlaIII CATG 4 cut(s) 170, 272, 421, 640
NlaIV GGNNCC 2 cut(s) 17, 1109
NmuCI GTSAC 1 cut(s) 733
NspI RCATGY 2 cut(s) 272, 640
PaeI GCATGC 1 cut(s) 272
PciSI GCTCTTC 1 cut(s) 168
PcsI WCGNNNNNNNCGW 1 cut(s) 786
PctI GAATGC 2 cut(s) 789, 1008
PfeI GAWTC 3 cut(s) 605, 683, 768
PflMI CCANNNNNTGG 2 cut(s) 51, 709
PfoI TCCNGGA 1 cut(s) 11
PleI GAGTC 4 cut(s) 49, 205, 422, 1043
PpsI GAGTC 4 cut(s) 49, 205, 422, 1043
PsiI TTATAA 1 cut(s) 341
Psp1406I AACGTT 1 cut(s) 87
Psp6I CCWGG 2 cut(s) 11, 760
PspGI CCWGG 2 cut(s) 11, 760
PspN4I GGNNCC 2 cut(s) 17, 1109
PspPI GGNCC 1 cut(s) 544
PstNI CAGNNNCTG 1 cut(s) 541
RsaI GTAC 2 cut(s) 797, 935
RsaNI GTAC 2 cut(s) 796, 934
SapI GCTCTTC 1 cut(s) 168
SaqAI TTAA 1 cut(s) 870
Sau3AI GATC 1 cut(s) 1014
Sau96I GGNCC 1 cut(s) 544
ScaI AGTACT 1 cut(s) 935
SchI GAGTC 4 cut(s) 49, 205, 423, 1044
ScrFI CCNGG 2 cut(s) 13, 762
SfaNI GCATC 4 cut(s) 31, 99, 385, 708
SphI GCATGC 1 cut(s) 272
Sse9I AATT 6 cut(s) 215, 236, 325, 807, 855, 1044
SsiI CCGC 7 cut(s) 173, 527, 547, 583, 1032, 1076, 1117
SspI AATATT 1 cut(s) 499
SspMI CTAG 5 cut(s) 380, 432, 707, 908, 1022
StyD4I CCNGG 2 cut(s) 11, 760
TaaI ACNGT 4 cut(s) 262, 301, 733, 998
TaiI ACGT 4 cut(s) 90, 397, 526, 740
TaqI TCGA 3 cut(s) 100, 686, 831
TasI AATT 6 cut(s) 215, 236, 325, 807, 855, 1044
TatI WGTACW 2 cut(s) 795, 933
TauI GCSGC 2 cut(s) 176, 549
TfiI GAWTC 3 cut(s) 605, 683, 768
Tru1I TTAA 1 cut(s) 870
Tru9I TTAA 1 cut(s) 870
TseFI GTSAC 1 cut(s) 733
TseI GCWGC 9 cut(s) 71, 112, 272, 383, 473, 535, 743, 746, 1029
Tsp45I GTSAC 1 cut(s) 733
TspDTI ATGAA 5 cut(s) 155, 215, 360, 611, 696
TspGWI ACGGA 2 cut(s) 375, 795
Van91I CCANNNNNTGG 2 cut(s) 51, 709
XceI RCATGY 2 cut(s) 272, 640
XcmI CCANNNNNNNNNTGG 1 cut(s) 946
XmiI GTMKAC 1 cut(s) 520
XspI CTAG 5 cut(s) 380, 432, 707, 908, 1022
ZrmI AGTACT 1 cut(s) 935
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.