pycom05g19680

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0000319
Physical Location & Seq
Reverse (-)
22566845 .. 22567483
639 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g19680.1

Sequence Viewer

Length: 639 bp
ATGAATCCTTCTCTTTATGAAGCAGCTGCAACTGGCGATGTTGGCTTCTTGGAAAAAATTAGAGACGGTCGTCTAACAGCTGATCTCTTTCAGAAAACACCTGAAGAGAACAATATTCTTCACATTGCAGCTGAATTCAAGCAAATAAACTTCATCAAAGAAGTGAAAATACATCATGAATCTCCCCCGTTTTGGGCCACCAACAAGAACGGCGAAACTCCTCTACATGTTGCTGCGAGAGTAGGATGTGATGAAGTAGTAAAGTTCCTCATTGACCACACAATATCGCTACCTATTGAAGGAGTTGATTCAGAAGAGGTACCAATTGACGGTGAGGCTTACAAAAAGCTACTCTGGATGGCTAATTTGGAAATGGATACAGCTTTGCATGTTGCTGTTCGATACGATCATGCTGGAGTAGTGAAGCTTTTGATGAGAGCTGATCCTGAATTGTGCTGTTCATGTTACTGCATCAAGGAATCACCCTTGTTCCTTGCCGTTAGAGCCGGGTCTACCAGCATTGCCGATTATATTTTAAACGAGACTCCCACTCATATATCTCCTTCTTTTCAGGGAACAAATGGTGTGACAGCTTTGCACGCAGCAGCCACTCGAAAATACTTCGACAAAGGTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_4 Ank_5 PGG

Protein Analysis

213

Amino Acids

23.45

Weight (kDa)

5.44

Isoelectric Point (pI)

33.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 8 - 96 8.1e-10 Ankyrin repeats (3 copies)
Ank PF00023 70 - 93 3.5e-06 Ankyrin repeat
Ank_2 PF12796 122 - 180 1.3e-06 Ankyrin repeats (3 copies)
Ank_2 PF12796 129 - 207 9.8e-09 Ankyrin repeats (3 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000319)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18590 FvH4_1g18590 FvH4_3g16140 FvH4_3g16141 FvH4_3g16160
malus_domestica MD02G1193600.v1.1 MD04G1020900.v1.1 MD04G1021000.v1.1 MD05G1212100.v1.1 MD05G1212300.v1.1 MD05G1213100.v1.1 MD05G1213400.v1.1 MD10G1197300.v1.1
prunus_persica Prupe.4G144500_v2.0.a1 Prupe.4G144600_v2.0.a1 Prupe.4G144800_v2.0.a1 Prupe.4G144900_v2.0.a1 Prupe.4G145100_v2.0.a1 Prupe.4G145300_v2.0.a1
pyrus_communis pycom02g15730 pycom02g15740 pycom05g19670 pycom05g19680 pycom10g17020 pycom11g27250
rosa_chinensis RchiOBHm_Chr2g0109301 RchiOBHm_Chr2g0109321 RchiOBHm_Chr2g0109341 RchiOBHm_Chr2g0109381 RchiOBHm_Chr3g0482301 RchiOBHm_Chr5g0027111 RchiOBHm_Chr5g0027121 RchiOBHm_Chr5g0027141 RchiOBHm_Chr5g0027181 RchiOBHm_Chr5g0027241
rosa_laevigata RLG00000017731 RLG00000017732 RLG00000032990 RLG00000032992 RLG00000032993 RLG00000032995 RLG00000032997 RLG00000033002
rosa_multiflora Rmu_sc0000135.1_g000002 Rmu_sc0000332.1_g000010 Rmu_sc0000882.1_g000028 Rmu_sc0000882.1_g000032 Rmu_sc0000882.1_g000033 Rmu_sc0000882.1_g000039 Rmu_sc0000882.1_g000043 Rmu_sc0000882.1_g000046 Rmu_sc0006065.1_g000003 Rmu_sc0006065.1_g000012 Rmu_sc0006065.1_g000018 Rmu_sc0006065.1_g000019 Rmu_sc0006065.1_g000022 Rmu_sc0007497.1_g000002 Rmu_sc0013610.1_g000011 Rmu_sc0015338.1_g000006 Rmu_ssc0000357.1_g000035
rosa_roxburghii Rroxscaffold_1G00052250 Rroxscaffold_1G00052280 Rroxscaffold_1G00052290 Rroxscaffold_1G00052310 Rroxscaffold_1G00052330 Rroxscaffold_1G00052360 Rroxscaffold_1G00052380 Rroxscaffold_1G00052390 Rroxscaffold_2G00134310 Rroxscaffold_2G00134330
rosa_rugosa Rorug02G0159400 Rorug05G0097300 Rorug05G0097500 Rorug05G0097600 Rorug05G0097700 Rorug05G0097700 Rorug05G0097700 Rorug05G0122900
rosa_samantha Rh2AG210900 Rh2AG211200 Rh2AG211500 Rh2BG221200 Rh2BG221800 Rh2CG213100 Rh2CG213200 Rh2CG213600 Rh3CG277900 Rh3CG278000 Rh3CG278600 Rh3DG274600 Rh5BG188600 Rh5BG188700 Rh5BG188900 Rh5BG189100 Rh5BG189200 Rh5BG189400 Rh5CG208400 Rh5CG208500 Rh5CG208700 Rh5CG209000 Rh5CG209100 Rh5CG209400 Rh5CG209700 Rh5CG209800 Rh5CG209900 Rh5CG210000 Rh5DG190500 Rh5DG190700 Rh5DG191200 Rh5DG191500
rosa_wichuraiana Rw3G022160 Rw5G017410 Rw5G017420 Rw5G017450 Rw5G017460 Rw5G017470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 319
AccB1I GGYRCC 1 cut(s) 319
AccI GTMKAC 1 cut(s) 512
AclWI GGATC 1 cut(s) 437
AcsI RAATTY 1 cut(s) 134
AcuI CTGAAG 1 cut(s) 123
AfaI GTAC 1 cut(s) 321
AfiI CCNNNNNNNGG 4 cut(s) 192, 193, 299, 329
AflIII ACRYGT 1 cut(s) 226
AgsI TTSAA 2 cut(s) 139, 299
AluBI AGCT 8 cut(s) 26, 80, 131, 349, 383, 427, 440, 593
AluI AGCT 8 cut(s) 26, 80, 131, 349, 383, 427, 440, 593
Alw26I GTCTC 2 cut(s) 57, 536
AlwI GGATC 1 cut(s) 437
AoxI GGCC 1 cut(s) 195
ApeKI GCWGC 6 cut(s) 23, 26, 128, 233, 602, 605
ApoI RAATTY 1 cut(s) 134
Asp718I GGTACC 1 cut(s) 319
AspS9I GGNCC 1 cut(s) 195
AsuC2I CCSGG 1 cut(s) 508
AsuHPI GGTGA 2 cut(s) 344, 474
BanI GGYRCC 1 cut(s) 319
BarI GAAGNNNNNNTAC 2 cut(s) 153, 185
BbvI GCAGC 6 cut(s) 13, 35, 140, 220, 614, 617
BccI CCATC 1 cut(s) 352
BceAI ACGGC 2 cut(s) 226, 482
BciVI GTATCC 1 cut(s) 370
BcnI CCSGG 1 cut(s) 508
BcoDI GTCTC 2 cut(s) 57, 536
BfuI GTATCC 1 cut(s) 370
BisI GCNGC 6 cut(s) 24, 27, 129, 234, 603, 606
BlsI GCNGC 6 cut(s) 25, 28, 130, 235, 604, 607
Bme1390I CCNGG 1 cut(s) 508
BmgT120I GGNCC 1 cut(s) 195
BmiI GGNNCC 1 cut(s) 321
BmrFI CCNGG 1 cut(s) 508
BmsI GCATC 1 cut(s) 480
BoxI GACNNNNGTC 1 cut(s) 69
BpmI CTGGAG 1 cut(s) 435
BpuMI CCSGG 1 cut(s) 508
Bsc4I CCNNNNNNNGG 4 cut(s) 192, 193, 299, 329
Bse1I ACTGG 1 cut(s) 37
Bse3DI GCAATG 2 cut(s) 123, 519
BseGI GGATG 2 cut(s) 251, 363
BseLI CCNNNNNNNGG 4 cut(s) 192, 193, 299, 329
BseMI GCAATG 2 cut(s) 123, 519
BseNI ACTGG 1 cut(s) 37
BseRI GAGGAG 1 cut(s) 210
BseXI GCAGC 6 cut(s) 13, 35, 140, 220, 614, 617
Bsh1285I CGRYCG 1 cut(s) 70
BshFI GGCC 1 cut(s) 197
BshNI GGYRCC 1 cut(s) 319
BsiEI CGRYCG 1 cut(s) 70
BsiSI CCGG 1 cut(s) 507
BslI CCNNNNNNNGG 4 cut(s) 192, 193, 299, 329
BsmAI GTCTC 2 cut(s) 57, 536
BsmBI CGTCTC 1 cut(s) 57
BsnI GGCC 1 cut(s) 197
Bsp143I GATC 3 cut(s) 82, 406, 442
BspANI GGCC 1 cut(s) 197
BspHI TCATGA 1 cut(s) 175
BspLI GGNNCC 1 cut(s) 321
BspPI GGATC 1 cut(s) 437
BspT107I GGYRCC 1 cut(s) 319
BsrDI GCAATG 2 cut(s) 123, 519
BsrI ACTGG 1 cut(s) 37
BssMI GATC 3 cut(s) 82, 406, 442
Bst4CI ACNGT 2 cut(s) 68, 332
Bst6I CTCTTC 2 cut(s) 99, 309
BstC8I GCNNGC 1 cut(s) 600
BstENI CCTNNNNNAGG 1 cut(s) 297
BstF5I GGATG 2 cut(s) 251, 363
BstKTI GATC 3 cut(s) 85, 409, 445
BstMAI GTCTC 2 cut(s) 57, 536
BstMBI GATC 3 cut(s) 82, 406, 442
BstMCI CGRYCG 1 cut(s) 70
BstMWI GCNNNNNNNGC 3 cut(s) 42, 503, 599
BstNSI RCATGY 2 cut(s) 230, 392
BstPAI GACNNNNGTC 1 cut(s) 69
BstSCI CCNGG 1 cut(s) 506
BstV1I GCAGC 6 cut(s) 13, 35, 140, 220, 614, 617
BsuI GTATCC 1 cut(s) 370
BsuRI GGCC 1 cut(s) 197
BtgZI GCGATG 1 cut(s) 51
BtsCI GGATG 2 cut(s) 251, 363
Cac8I GCNNGC 1 cut(s) 600
CciI TCATGA 1 cut(s) 175
Cfr13I GGNCC 1 cut(s) 195
Csp6I GTAC 1 cut(s) 320
CviAII CATG 5 cut(s) 176, 227, 389, 410, 462
CviQI GTAC 1 cut(s) 320
DpnI GATC 3 cut(s) 84, 408, 444
DpnII GATC 3 cut(s) 82, 406, 442
DraI TTTAAA 1 cut(s) 537
Eam1104I CTCTTC 2 cut(s) 99, 309
EarI CTCTTC 2 cut(s) 99, 309
Eco57I CTGAAG 1 cut(s) 123
EcoNI CCTNNNNNAGG 1 cut(s) 297
EcoRI GAATTC 1 cut(s) 134
Esp3I CGTCTC 1 cut(s) 57
FaeI CATG 5 cut(s) 179, 230, 392, 413, 465
FaiI YATR 9 cut(s) 18, 177, 228, 390, 411, 463, 531, 555, 557
FatI CATG 5 cut(s) 175, 226, 388, 409, 461
FblI GTMKAC 1 cut(s) 512
Fnu4HI GCNGC 6 cut(s) 24, 27, 129, 234, 603, 606
FokI GGATG 2 cut(s) 258, 370
Fsp4HI GCNGC 6 cut(s) 24, 27, 129, 234, 603, 606
GluI GCNGC 6 cut(s) 24, 27, 129, 234, 603, 606
GsuI CTGGAG 1 cut(s) 435
HaeIII GGCC 1 cut(s) 197
HapII CCGG 1 cut(s) 507
Hin1II CATG 5 cut(s) 179, 230, 392, 413, 465
HindIII AAGCTT 1 cut(s) 425
HinfI GANTC 5 cut(s) 4, 179, 308, 479, 544
HpaII CCGG 1 cut(s) 507
HphI GGTGA 2 cut(s) 344, 474
Hpy166II GTNNAC 1 cut(s) 513
Hpy188I TCNGA 2 cut(s) 93, 313
Hpy188III TCNNGA 3 cut(s) 176, 355, 446
Hpy8I GTNNAC 1 cut(s) 513
HpyAV CCTTC 3 cut(s) 18, 293, 573
HpyCH4III ACNGT 2 cut(s) 68, 332
HpyCH4V TGCA 5 cut(s) 29, 128, 388, 471, 598
HpyF10VI GCNNNNNNNGC 3 cut(s) 42, 503, 599
Hsp92II CATG 5 cut(s) 179, 230, 392, 413, 465
KpnI GGTACC 1 cut(s) 323
Kzo9I GATC 3 cut(s) 82, 406, 442
LpnPI CCDG 8 cut(s) 18, 114, 340, 399, 459, 520, 529, 557
Lsp1109I GCAGC 6 cut(s) 13, 35, 140, 220, 614, 617
LweI GCATC 1 cut(s) 480
MaeIII GTNAC 2 cut(s) 464, 586
MalI GATC 3 cut(s) 84, 408, 444
MboI GATC 3 cut(s) 82, 406, 442
MboII GAAGA 3 cut(s) 110, 116, 326
MfeI CAATTG 1 cut(s) 324
MluCI AATT 6 cut(s) 57, 134, 324, 364, 449, 634
MlyI GAGTC 1 cut(s) 538
MnlI CCTC 4 cut(s) 231, 278, 310, 328
MseI TTAA 2 cut(s) 536, 637
MspA1I CMGCKG 3 cut(s) 26, 80, 131
MspI CCGG 1 cut(s) 507
MspR9I CCNGG 1 cut(s) 508
MunI CAATTG 1 cut(s) 324
MwoI GCNNNNNNNGC 3 cut(s) 42, 503, 599
NciI CCSGG 1 cut(s) 508
NdeII GATC 3 cut(s) 82, 406, 442
NlaIII CATG 5 cut(s) 179, 230, 392, 413, 465
NlaIV GGNNCC 1 cut(s) 321
NmuCI GTSAC 1 cut(s) 586
NspI RCATGY 2 cut(s) 230, 392
PagI TCATGA 1 cut(s) 175
PciI ACATGT 1 cut(s) 226
PfeI GAWTC 4 cut(s) 4, 179, 308, 479
PkrI GCNGC 6 cut(s) 25, 28, 130, 235, 604, 607
PleI GAGTC 1 cut(s) 538
PpsI GAGTC 1 cut(s) 538
PscI ACATGT 1 cut(s) 226
PshAI GACNNNNGTC 1 cut(s) 69
PspN4I GGNNCC 1 cut(s) 321
PspPI GGNCC 1 cut(s) 195
PvuII CAGCTG 3 cut(s) 26, 80, 131
RsaI GTAC 1 cut(s) 321
RsaNI GTAC 1 cut(s) 320
SaqAI TTAA 2 cut(s) 536, 637
SatI GCNGC 6 cut(s) 24, 27, 129, 234, 603, 606
Sau3AI GATC 3 cut(s) 82, 406, 442
Sau96I GGNCC 1 cut(s) 195
SchI GAGTC 1 cut(s) 538
ScrFI CCNGG 1 cut(s) 508
SfaNI GCATC 1 cut(s) 480
Sse9I AATT 6 cut(s) 57, 134, 324, 364, 449, 634
SspI AATATT 1 cut(s) 115
StyD4I CCNGG 1 cut(s) 506
TaaI ACNGT 2 cut(s) 68, 332
TaqI TCGA 3 cut(s) 400, 613, 624
TasI AATT 6 cut(s) 57, 134, 324, 364, 449, 634
TfiI GAWTC 4 cut(s) 4, 179, 308, 479
Tru1I TTAA 2 cut(s) 536, 637
Tru9I TTAA 2 cut(s) 536, 637
TseFI GTSAC 1 cut(s) 586
TseI GCWGC 6 cut(s) 23, 26, 128, 233, 602, 605
Tsp45I GTSAC 1 cut(s) 586
TspDTI ATGAA 6 cut(s) 17, 33, 142, 192, 267, 450
XagI CCTNNNNNAGG 1 cut(s) 297
XapI RAATTY 1 cut(s) 134
XceI RCATGY 2 cut(s) 230, 392
XmiI GTMKAC 1 cut(s) 512
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.