Rh5BG188900

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000319
Physical Location & Seq
Forward (+)
20720810 .. 20731626
10817 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG188900.1

Sequence Viewer

Length: 2022 bp
ATGGATCCTTCTATGTATAGGGCGGCAACTTGTGGTGATGATGGTTTCTTGCAAAGAATTAGAGATGGTGATGTATCAACTGATCTTCTCAGTCAAAAAACCCCAAAGGGCAACAACATTCTTCACCTTGCAGCTGAATTCAAGCAGATCAATTTCTTCAAAGGCGTCCCCTCCTTTGAGAAAGGCTCTCCGCTGCTTTGGAACATCAACAAGATGGGTGATACCCCCTTGCACATTGCTGCAAGAGTAGGATGTGTTGAATTGGTGGACTTCCTTATTGATCGTGCAAAAATGCTACATGTTCAGAGAGTTGGCGATCAGGAAAGGGGAACAACATATGCTGAATCTTATAAAAAGTTACTGCGGAAGACCAACTTGGAAAAGCATACGGCATTGCATGTTGCTGCCCGATATGGCCATCGTCAAGTGGTGATTTTGTTGATAAAAGCGGATCCTGAATTGTGTTGTTCTACTAATAGCAAAAAGGAGTCGCCATTGTTCTTGGCGATCTGCAAGGGTTTTTCTAACATTGCTGGTGACATTTTGGAGGAGCCTTCAATAAGACCTTCTTTCCAAGGAATCAATGGTGTTACAGCCTTACATGCAGCCGTAACTCATACATACCAAGGCTCTGAAGAGATTGTGAAGATCATGGTGTTCAAATATCCTGATATGATCAAAAAAGCTGATGAACTTGGGTGGACACCCTTACAGTACGCAGCATTTAGAGGGAACGATAAAGTCGTTACATGGTTGATGGAATCAGACAAGTCTAGTACTTCCTATATCTCGGACAAATGTGGAATGACAGCTCTTCATGTCGCAGCATATAAAGGCCACATCGAAGTAATGAAGAAACTGATTCAATATCAGCCTGATACTTGTGAGTGCCTCAATGCCAAAGACCAAACGATTCTTCATGTCGCAGTTTTAGGTGCACAAAGTGATGTTGTGAAGTACATACTGGAGCTACCCGAGCTTCCGAGACTTATAGATCAAGCAGATAAAGAAGGATATACCCCTTTGCATCTAGCTATCATGGGTCAAAAGCATGAAATTACAAGAATGCTGAAACGGGACTGTGGAGTCGACAATACTTCTCTTCATAAGGGATTCTCTTTTGACAATTTTCTTGGTGAAGATACCAAAATACAGACAGCTTCAGCTCTGTGCAACCGGAAAAGGGAAGATCCAAACTTGTCACCCAATAACAAAGCCGAACAAGATGGAGAAGAAGGAATCTCAGTCAGAGTGGGTGAAGAGGGAAGCTCGGTCATACTGGGAAAAGGAAGCTCGGTCATACTGGGACGATACAAACTAGTTTTGGAGGAGAATATGGCTAACAAAGTGAACGAGCAGGAAATGAGTACTGAGAGTAGTCATCCGGGGCGCTCCTTTGGGGTACCATCATTCCAAGAACAAATCAGTCGTGATTTCAAGAAATTTGAGTCGCATCCGGATGACAAAGACTCCGGCACATCGGCAGTTGCTGGCAAACCAGAAAATGCGAAATCTGATGTTCTACTGATAGCGACAATTATAGCAACAGTTACATTCGCGGCCGGTCTCACCCCGCCGGGAGGATATGGAGACGACGGAAAGATAATTTTACAAGAAAATACAAATTTCAAATGGTTTTTTACATTGAACGTTATCTCGTTCCTGCTCTCAAGCCTGGTTCTTATCCGAGAATCTGGGCCACGTTTGGGCTCCAGACTCTCCAAAATACTTGGTCCATTATTGTTGGCTCTCCAATCTGAAACCATCATTCCGGCTTCCCTTTGCGGAATGTTTTTAGCATTTGTGCAGGGCACAACAGCAGGGCTAAACAAATCAAACGCCTCAATCAAATCGCTCTGGCCTGGTCCTCTCACAATAGCAGCTGGAACAGCTTTAACGATGTTTGGTTTGGGCCCAGGTTTTATTCAAGCCCGCTTGAAGACCGGGGATGCACGTCGTGAAAAAAGATCCGACTCGGAAGGCAGGAGATTCCGTGGTATATTCTCTTTTTGGTCAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_4 Ank_5 PGG

Protein Analysis

673

Amino Acids

74.04

Weight (kDa)

8.31

Isoelectric Point (pI)

36.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 8 - 95 1.9e-06 Ankyrin repeats (3 copies)
Ank_2 PF12796 119 - 181 5.4e-07 Ankyrin repeats (3 copies)
Ank_2 PF12796 194 - 256 3.3e-08 Ankyrin repeats (3 copies)
Ank_4 PF13637 244 - 288 1.3e-06 Ankyrin repeats (many copies)
Ank_2 PF12796 264 - 323 2.8e-10 Ankyrin repeats (3 copies)
Ank_4 PF13637 272 - 321 7.2e-07 Ankyrin repeats (many copies)
Ank_2 PF12796 298 - 365 1.6e-07 Ankyrin repeats (3 copies)
PGG PF13962 501 - 606 1.2e-17 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000319)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18590 FvH4_1g18590 FvH4_3g16140 FvH4_3g16141 FvH4_3g16160
malus_domestica MD02G1193600.v1.1 MD04G1020900.v1.1 MD04G1021000.v1.1 MD05G1212100.v1.1 MD05G1212300.v1.1 MD05G1213100.v1.1 MD05G1213400.v1.1 MD10G1197300.v1.1
prunus_persica Prupe.4G144500_v2.0.a1 Prupe.4G144600_v2.0.a1 Prupe.4G144800_v2.0.a1 Prupe.4G144900_v2.0.a1 Prupe.4G145100_v2.0.a1 Prupe.4G145300_v2.0.a1
pyrus_communis pycom02g15730 pycom02g15740 pycom05g19670 pycom05g19680 pycom10g17020 pycom11g27250
rosa_chinensis RchiOBHm_Chr2g0109301 RchiOBHm_Chr2g0109321 RchiOBHm_Chr2g0109341 RchiOBHm_Chr2g0109381 RchiOBHm_Chr3g0482301 RchiOBHm_Chr5g0027111 RchiOBHm_Chr5g0027121 RchiOBHm_Chr5g0027141 RchiOBHm_Chr5g0027181 RchiOBHm_Chr5g0027241
rosa_laevigata RLG00000017731 RLG00000017732 RLG00000032990 RLG00000032992 RLG00000032993 RLG00000032995 RLG00000032997 RLG00000033002
rosa_multiflora Rmu_sc0000135.1_g000002 Rmu_sc0000332.1_g000010 Rmu_sc0000882.1_g000028 Rmu_sc0000882.1_g000032 Rmu_sc0000882.1_g000033 Rmu_sc0000882.1_g000039 Rmu_sc0000882.1_g000043 Rmu_sc0000882.1_g000046 Rmu_sc0006065.1_g000003 Rmu_sc0006065.1_g000012 Rmu_sc0006065.1_g000018 Rmu_sc0006065.1_g000019 Rmu_sc0006065.1_g000022 Rmu_sc0007497.1_g000002 Rmu_sc0013610.1_g000011 Rmu_sc0015338.1_g000006 Rmu_ssc0000357.1_g000035
rosa_roxburghii Rroxscaffold_1G00052250 Rroxscaffold_1G00052280 Rroxscaffold_1G00052290 Rroxscaffold_1G00052310 Rroxscaffold_1G00052330 Rroxscaffold_1G00052360 Rroxscaffold_1G00052380 Rroxscaffold_1G00052390 Rroxscaffold_2G00134310 Rroxscaffold_2G00134330
rosa_rugosa Rorug02G0159400 Rorug05G0097300 Rorug05G0097500 Rorug05G0097600 Rorug05G0097700 Rorug05G0097700 Rorug05G0097700 Rorug05G0122900
rosa_samantha Rh2AG210900 Rh2AG211200 Rh2AG211500 Rh2BG221200 Rh2BG221800 Rh2CG213100 Rh2CG213200 Rh2CG213600 Rh3CG277900 Rh3CG278000 Rh3CG278600 Rh3DG274600 Rh5BG188600 Rh5BG188700 Rh5BG188900 Rh5BG189100 Rh5BG189200 Rh5BG189400 Rh5CG208400 Rh5CG208500 Rh5CG208700 Rh5CG209000 Rh5CG209100 Rh5CG209400 Rh5CG209700 Rh5CG209800 Rh5CG209900 Rh5CG210000 Rh5DG190500 Rh5DG190700 Rh5DG191200 Rh5DG191500
rosa_wichuraiana Rw3G022160 Rw5G017410 Rw5G017420 Rw5G017450 Rw5G017460 Rw5G017470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 351
AasI GACNNNNNNGTC 1 cut(s) 1085
Acc65I GGTACC 1 cut(s) 1402
AccB1I GGYRCC 1 cut(s) 1402
AccI GTMKAC 1 cut(s) 1089
AccII CGCG 1 cut(s) 1559
AccIII TCCGGA 1 cut(s) 1456
AciI CCGC 8 cut(s) 23, 191, 364, 449, 1559, 1574, 1785, 1933
AclI AACGTT 1 cut(s) 1650
AclWI GGATC 5 cut(s) 12, 446, 459, 1184, 1962
AcoI YGGCCR 2 cut(s) 415, 1560
AcsI RAATTY 3 cut(s) 137, 1442, 1624
AcuI CTGAAG 2 cut(s) 654, 1146
AcyI GRCGYC 1 cut(s) 165
AdeI CACNNNGTG 2 cut(s) 944, 1958
AfaI GTAC 5 cut(s) 716, 778, 959, 1369, 1404
AfiI CCNNNNNNNGG 3 cut(s) 1183, 1580, 1706
AflIII ACRYGT 1 cut(s) 298
AhlI ACTAGT 1 cut(s) 1318
AjiI CACGTC 1 cut(s) 1955
AjnI CCWGG 3 cut(s) 1674, 1861, 1915
AjuI GAANNNNNNNTTGG 4 cut(s) 359, 391, 900, 932
Alw21I GWGCWC 1 cut(s) 940
Alw26I GTCTC 3 cut(s) 979, 1571, 1584
Alw44I GTGCAC 1 cut(s) 936
AlwI GGATC 5 cut(s) 12, 446, 459, 1184, 1962
AlwNI CAGNNNCTG 1 cut(s) 1490
Ama87I CYCGRG 1 cut(s) 974
Aor13HI TCCGGA 1 cut(s) 1456
AoxI GGCC 6 cut(s) 415, 835, 1560, 1697, 1859, 1912
ApaI GGGCCC 1 cut(s) 1916
ApaLI GTGCAC 1 cut(s) 936
ApeKI GCWGC 8 cut(s) 131, 193, 239, 404, 605, 719, 824, 1880
ApoI RAATTY 3 cut(s) 137, 1442, 1624
Asp718I GGTACC 1 cut(s) 1402
AspLEI GCGC 1 cut(s) 1392
AspS9I GGNCC 5 cut(s) 1697, 1733, 1865, 1912, 1913
AsuC2I CCSGG 3 cut(s) 1386, 1578, 1945
AvaI CYCGRG 1 cut(s) 974
AvaII GGWCC 2 cut(s) 1733, 1865
BaeGI GKGCMC 3 cut(s) 940, 1814, 1916
BalI TGGCCA 1 cut(s) 417
BamHI GGATCC 2 cut(s) 4, 451
BanI GGYRCC 1 cut(s) 1402
BanII GRGCYC 2 cut(s) 1712, 1916
BbsI GAAGAC 2 cut(s) 374, 1946
Bbv12I GWGCWC 1 cut(s) 940
BbvI GCAGC 8 cut(s) 143, 180, 226, 391, 617, 731, 836, 1892
BccI CCATC 8 cut(s) 35, 59, 208, 426, 751, 1220, 1414, 1772
BceAI ACGGC 2 cut(s) 405, 593
BciT130I CCWGG 3 cut(s) 1676, 1863, 1917
BclI TGATCA 1 cut(s) 675
BcnI CCSGG 3 cut(s) 1386, 1578, 1945
BcoDI GTCTC 3 cut(s) 979, 1571, 1584
BcuI ACTAGT 1 cut(s) 1318
BfaI CTAG 3 cut(s) 774, 1031, 1319
BfoI RGCGCY 1 cut(s) 1393
BmcAI AGTACT 2 cut(s) 778, 1369
Bme1390I CCNGG 6 cut(s) 1386, 1578, 1676, 1863, 1917, 1945
Bme18I GGWCC 2 cut(s) 1733, 1865
BmeT110I CYCGRG 1 cut(s) 974
BmgBI CACGTC 1 cut(s) 1955
BmgT120I GGNCC 5 cut(s) 1697, 1733, 1865, 1912, 1913
BmiI GGNNCC 6 cut(s) 6, 453, 552, 1404, 1711, 1914
BmrFI CCNGG 6 cut(s) 1386, 1578, 1676, 1863, 1917, 1945
BmrI ACTGGG 2 cut(s) 1289, 1313
BmsI GCATC 3 cut(s) 1036, 1462, 1939
BmuI ACTGGG 2 cut(s) 1289, 1313
BpiI GAAGAC 2 cut(s) 374, 1946
BplI GAGNNNNNCTC 4 cut(s) 170, 202, 1253, 1285
BpmI CTGGAG 2 cut(s) 986, 1696
BpuEI CTTGAG 1 cut(s) 1654
BpuMI CCSGG 3 cut(s) 1386, 1578, 1945
BsaHI GRCGYC 1 cut(s) 165
BsaI GGTCTC 1 cut(s) 1571
BsaJI CCNNGG 6 cut(s) 574, 625, 1385, 1915, 1944, 1993
BsaWI WCCGGW 2 cut(s) 1176, 1456
BsaXI ACNNNNNCTCC 4 cut(s) 1454, 1484, 1978, 2008
Bsc4I CCNNNNNNNGG 3 cut(s) 1183, 1580, 1706
Bse118I RCCGGY 1 cut(s) 1562
Bse1I ACTGG 3 cut(s) 969, 1284, 1308
Bse3DI GCAATG 3 cut(s) 234, 392, 528
BseAI TCCGGA 1 cut(s) 1456
BseBI CCWGG 3 cut(s) 1676, 1863, 1917
BseDI CCNNGG 6 cut(s) 574, 625, 1385, 1915, 1944, 1993
BseGI GGATG 5 cut(s) 257, 1381, 1453, 1465, 1954
BseLI CCNNNNNNNGG 3 cut(s) 1183, 1580, 1706
BseMI GCAATG 3 cut(s) 234, 392, 528
BseMII CTCAG 3 cut(s) 103, 1257, 1362
BseNI ACTGG 3 cut(s) 969, 1284, 1308
BseRI GAGGAG 2 cut(s) 563, 1343
BseSI GKGCMC 3 cut(s) 940, 1814, 1916
BseX3I CGGCCG 1 cut(s) 1560
BseXI GCAGC 8 cut(s) 143, 180, 226, 391, 617, 731, 836, 1892
BsgI GTGCAG 1 cut(s) 1826
Bsh1236I CGCG 1 cut(s) 1559
Bsh1285I CGRYCG 1 cut(s) 1563
BshFI GGCC 6 cut(s) 417, 837, 1562, 1699, 1861, 1914
BshNI GGYRCC 1 cut(s) 1402
BsiEI CGRYCG 1 cut(s) 1563
BsiHKAI GWGCWC 1 cut(s) 940
BsiHKCI CYCGRG 1 cut(s) 974
BsiSI CCGG 8 cut(s) 1177, 1385, 1457, 1473, 1563, 1577, 1772, 1944
BslFI GGGAC 3 cut(s) 152, 1091, 1320
BslI CCNNNNNNNGG 3 cut(s) 1183, 1580, 1706
BsmAI GTCTC 3 cut(s) 979, 1571, 1584
BsmBI CGTCTC 1 cut(s) 1584
BsmFI GGGAC 3 cut(s) 152, 1091, 1320
BsmI GAATGC 1 cut(s) 1071
BsnI GGCC 6 cut(s) 417, 837, 1562, 1699, 1861, 1914
Bso31I GGTCTC 1 cut(s) 1571
BsoBI CYCGRG 1 cut(s) 974
Bsp120I GGGCCC 1 cut(s) 1912
Bsp1286I GDGCHC 4 cut(s) 940, 1712, 1814, 1916
Bsp13I TCCGGA 1 cut(s) 1456
BspACI CCGC 8 cut(s) 23, 191, 364, 449, 1559, 1574, 1785, 1933
BspANI GGCC 6 cut(s) 417, 837, 1562, 1699, 1861, 1914
BspCNI CTCAG 3 cut(s) 102, 1256, 1363
BspEI TCCGGA 1 cut(s) 1456
BspFNI CGCG 1 cut(s) 1559
BspLI GGNNCC 6 cut(s) 6, 453, 552, 1404, 1711, 1914
BspPI GGATC 5 cut(s) 12, 446, 459, 1184, 1962
BspQI GCTCTTC 1 cut(s) 819
BspT107I GGYRCC 1 cut(s) 1402
BspTNI GGTCTC 1 cut(s) 1571
BsrDI GCAATG 3 cut(s) 234, 392, 528
BsrFI RCCGGY 1 cut(s) 1562
BsrI ACTGG 3 cut(s) 969, 1284, 1308
BssAI RCCGGY 1 cut(s) 1562
BssECI CCNNGG 6 cut(s) 574, 625, 1385, 1915, 1944, 1993
BssNI GRCGYC 1 cut(s) 165
BssT1I CCWWGG 2 cut(s) 574, 625
Bst2UI CCWGG 3 cut(s) 1676, 1863, 1917
Bst4CI ACNGT 3 cut(s) 714, 1082, 1549
Bst6I CTCTTC 4 cut(s) 630, 819, 1107, 1254
BstACI GRCGYC 1 cut(s) 165
BstC8I GCNNGC 2 cut(s) 1492, 1933
BstDEI CTNAG 3 cut(s) 89, 1243, 1371
BstDSI CCRYGG 1 cut(s) 1993
BstF5I GGATG 5 cut(s) 257, 1381, 1453, 1465, 1954
BstFNI CGCG 1 cut(s) 1559
BstH2I RGCGCY 1 cut(s) 1393
BstHHI GCGC 1 cut(s) 1392
BstMAI GTCTC 3 cut(s) 979, 1571, 1584
BstMCI CGRYCG 1 cut(s) 1563
BstMWI GCNNNNNNNGC 3 cut(s) 602, 976, 1889
BstNI CCWGG 3 cut(s) 1676, 1863, 1917
BstNSI RCATGY 3 cut(s) 302, 401, 605
BstSCI CCNGG 6 cut(s) 1384, 1576, 1674, 1861, 1915, 1943
BstSLI GKGCMC 3 cut(s) 940, 1814, 1916
BstUI CGCG 1 cut(s) 1559
BstV1I GCAGC 8 cut(s) 143, 180, 226, 391, 617, 731, 836, 1892
BstV2I GAAGAC 2 cut(s) 374, 1946
BstX2I RGATCY 4 cut(s) 4, 451, 1189, 1967
BstYI RGATCY 4 cut(s) 4, 451, 1189, 1967
BstZI CGGCCG 1 cut(s) 1560
BsuRI GGCC 6 cut(s) 417, 837, 1562, 1699, 1861, 1914
BtgI CCRYGG 1 cut(s) 1993
BtrI CACGTC 1 cut(s) 1955
BtsCI GGATG 5 cut(s) 257, 1381, 1453, 1465, 1954
Cac8I GCNNGC 2 cut(s) 1492, 1933
CaiI CAGNNNCTG 1 cut(s) 1490
CfoI GCGC 1 cut(s) 1392
Cfr10I RCCGGY 1 cut(s) 1562
Cfr13I GGNCC 5 cut(s) 1697, 1733, 1865, 1912, 1913
CseI GACGC 1 cut(s) 154
Csp6I GTAC 5 cut(s) 715, 777, 958, 1368, 1403
CviAII CATG 9 cut(s) 299, 398, 602, 652, 750, 818, 920, 1039, 1052
CviQI GTAC 5 cut(s) 715, 777, 958, 1368, 1403
DdeI CTNAG 3 cut(s) 89, 1243, 1371
DraIII CACNNNGTG 2 cut(s) 944, 1958
DrdI GACNNNNNNGTC 1 cut(s) 1085
DseDI GACNNNNNNGTC 1 cut(s) 1085
EaeI YGGCCR 2 cut(s) 415, 1560
EagI CGGCCG 1 cut(s) 1560
Eam1104I CTCTTC 4 cut(s) 630, 819, 1107, 1254
EarI CTCTTC 4 cut(s) 630, 819, 1107, 1254
EclXI CGGCCG 1 cut(s) 1560
Eco130I CCWWGG 2 cut(s) 574, 625
Eco24I GRGCYC 2 cut(s) 1712, 1916
Eco31I GGTCTC 1 cut(s) 1571
Eco47I GGWCC 2 cut(s) 1733, 1865
Eco52I CGGCCG 1 cut(s) 1560
Eco57I CTGAAG 2 cut(s) 654, 1146
Eco88I CYCGRG 1 cut(s) 974
EcoRI GAATTC 1 cut(s) 137
EcoRII CCWGG 3 cut(s) 1674, 1861, 1915
EcoT14I CCWWGG 2 cut(s) 574, 625
EcoT38I GRGCYC 2 cut(s) 1712, 1916
ErhI CCWWGG 2 cut(s) 574, 625
Esp3I CGTCTC 1 cut(s) 1584
FaeI CATG 9 cut(s) 302, 401, 605, 655, 753, 821, 923, 1042, 1055
FalI AAGNNNNNCTT 4 cut(s) 359, 391, 553, 585
FaqI GGGAC 3 cut(s) 152, 1091, 1320
FatI CATG 9 cut(s) 298, 397, 601, 651, 749, 817, 919, 1038, 1051
FauI CCCGC 2 cut(s) 1581, 1940
FauNDI CATATG 1 cut(s) 337
FbaI TGATCA 1 cut(s) 675
FblI GTMKAC 1 cut(s) 1089
FokI GGATG 5 cut(s) 264, 1368, 1440, 1472, 1961
FriOI GRGCYC 2 cut(s) 1712, 1916
FspBI CTAG 3 cut(s) 774, 1031, 1319
GlaI GCGC 1 cut(s) 1391
GsuI CTGGAG 2 cut(s) 986, 1696
HaeII RGCGCY 1 cut(s) 1393
HaeIII GGCC 6 cut(s) 417, 837, 1562, 1699, 1861, 1914
HapII CCGG 8 cut(s) 1177, 1385, 1457, 1473, 1563, 1577, 1772, 1944
HgaI GACGC 1 cut(s) 154
HhaI GCGC 1 cut(s) 1392
Hin1I GRCGYC 1 cut(s) 165
Hin1II CATG 9 cut(s) 302, 401, 605, 655, 753, 821, 923, 1042, 1055
Hin6I GCGC 1 cut(s) 1390
HinP1I GCGC 1 cut(s) 1390
HincII GTYRAC 1 cut(s) 1090
HindII GTYRAC 1 cut(s) 1090
HpaII CCGG 8 cut(s) 1177, 1385, 1457, 1473, 1563, 1577, 1772, 1944
Hpy166II GTNNAC 5 cut(s) 268, 702, 938, 1090, 1351
Hpy188III TCNNGA 8 cut(s) 320, 455, 668, 1430, 1438, 1457, 1713, 1958
Hpy8I GTNNAC 5 cut(s) 268, 702, 938, 1090, 1351
Hpy99I CGWCG 2 cut(s) 1598, 1959
HpyAV CCTTC 6 cut(s) 18, 564, 576, 1004, 1229, 1973
HpyCH4III ACNGT 3 cut(s) 714, 1082, 1549
HpyCH4IV ACGT 3 cut(s) 1650, 1702, 1954
HpyF10VI GCNNNNNNNGC 3 cut(s) 602, 976, 1889
HpyF3I CTNAG 3 cut(s) 89, 1243, 1371
HpySE526I ACGT 3 cut(s) 1650, 1702, 1954
Hsp92I GRCGYC 1 cut(s) 165
Hsp92II CATG 9 cut(s) 302, 401, 605, 655, 753, 821, 923, 1042, 1055
HspAI GCGC 1 cut(s) 1390
Kpn2I TCCGGA 1 cut(s) 1456
KpnI GGTACC 1 cut(s) 1406
Ksp22I TGATCA 1 cut(s) 675
LguI GCTCTTC 1 cut(s) 819
LmnI GCTCC 4 cut(s) 550, 967, 1397, 1715
Lsp1109I GCAGC 8 cut(s) 143, 180, 226, 391, 617, 731, 836, 1892
LweI GCATC 3 cut(s) 1036, 1462, 1939
MaeI CTAG 3 cut(s) 774, 1031, 1319
MaeII ACGT 3 cut(s) 1650, 1702, 1954
MaeIII GTNAC 7 cut(s) 357, 536, 589, 610, 745, 1200, 1549
MflI RGATCY 4 cut(s) 4, 451, 1189, 1967
MhlI GDGCHC 4 cut(s) 940, 1712, 1814, 1916
MlsI TGGCCA 1 cut(s) 417
MluNI TGGCCA 1 cut(s) 417
MlyI GAGTC 6 cut(s) 497, 1095, 1457, 1463, 1710, 1967
MmeI TCCRAC 1 cut(s) 1995
MnlI CCTC 9 cut(s) 181, 541, 722, 902, 1255, 1321, 1574, 1852, 1878
Mox20I TGGCCA 1 cut(s) 417
MroI TCCGGA 1 cut(s) 1456
MscI TGGCCA 1 cut(s) 417
MseI TTAA 1 cut(s) 1895
MslI CAYNNNNRTG 1 cut(s) 1458
Msp20I TGGCCA 1 cut(s) 417
MspA1I CMGCKG 3 cut(s) 134, 193, 1883
MspI CCGG 8 cut(s) 1177, 1385, 1457, 1473, 1563, 1577, 1772, 1944
MspR9I CCNGG 6 cut(s) 1386, 1578, 1676, 1863, 1917, 1945
Mva1269I GAATGC 1 cut(s) 1071
MvaI CCWGG 3 cut(s) 1676, 1863, 1917
MvnI CGCG 1 cut(s) 1559
MwoI GCNNNNNNNGC 3 cut(s) 602, 976, 1889
NciI CCSGG 3 cut(s) 1386, 1578, 1945
NdeI CATATG 1 cut(s) 337
NlaIII CATG 9 cut(s) 302, 401, 605, 655, 753, 821, 923, 1042, 1055
NlaIV GGNNCC 6 cut(s) 6, 453, 552, 1404, 1711, 1914
NmuCI GTSAC 2 cut(s) 536, 1200
NspI RCATGY 3 cut(s) 302, 401, 605
PciI ACATGT 1 cut(s) 298
PciSI GCTCTTC 1 cut(s) 819
PcsI WCGNNNNNNNCGW 1 cut(s) 741
PctI GAATGC 1 cut(s) 1071
PfeI GAWTC 9 cut(s) 344, 579, 761, 862, 913, 1113, 1239, 1691, 1989
PleI GAGTC 6 cut(s) 496, 1094, 1456, 1463, 1710, 1967
PpsI GAGTC 6 cut(s) 496, 1094, 1456, 1463, 1710, 1967
PscI ACATGT 1 cut(s) 298
PsiI TTATAA 1 cut(s) 351
Psp1406I AACGTT 1 cut(s) 1650
Psp6I CCWGG 3 cut(s) 1674, 1861, 1915
PspGI CCWGG 3 cut(s) 1674, 1861, 1915
PspN4I GGNNCC 6 cut(s) 6, 453, 552, 1404, 1711, 1914
PspOMI GGGCCC 1 cut(s) 1912
PspPI GGNCC 5 cut(s) 1697, 1733, 1865, 1912, 1913
PstNI CAGNNNCTG 1 cut(s) 1490
PsuI RGATCY 4 cut(s) 4, 451, 1189, 1967
PvuII CAGCTG 2 cut(s) 134, 1883
RsaI GTAC 5 cut(s) 716, 778, 959, 1369, 1404
RsaNI GTAC 5 cut(s) 715, 777, 958, 1368, 1403
RseI CAYNNNNRTG 1 cut(s) 1458
SalI GTCGAC 1 cut(s) 1088
SapI GCTCTTC 1 cut(s) 819
SaqAI TTAA 1 cut(s) 1895
Sau96I GGNCC 5 cut(s) 1697, 1733, 1865, 1912, 1913
ScaI AGTACT 2 cut(s) 778, 1369
SchI GAGTC 6 cut(s) 497, 1095, 1457, 1463, 1710, 1967
ScrFI CCNGG 6 cut(s) 1386, 1578, 1676, 1863, 1917, 1945
SduI GDGCHC 4 cut(s) 940, 1712, 1814, 1916
SfaNI GCATC 3 cut(s) 1036, 1462, 1939
SinI GGWCC 2 cut(s) 1733, 1865
SmiMI CAYNNNNRTG 1 cut(s) 1458
SmlI CTYRAG 1 cut(s) 1669
SmoI CTYRAG 1 cut(s) 1669
SpeI ACTAGT 1 cut(s) 1318
SsiI CCGC 8 cut(s) 23, 191, 364, 449, 1559, 1574, 1785, 1933
SspMI CTAG 3 cut(s) 774, 1031, 1319
StyD4I CCNGG 6 cut(s) 1384, 1576, 1674, 1861, 1915, 1943
StyI CCWWGG 2 cut(s) 574, 625
TaaI ACNGT 3 cut(s) 714, 1082, 1549
TaiI ACGT 3 cut(s) 1653, 1705, 1957
TaqI TCGA 2 cut(s) 843, 1089
TaqII GACCGA 2 cut(s) 1261, 1285
TatI WGTACW 3 cut(s) 776, 957, 1367
TauI GCSGC 2 cut(s) 26, 1562
TfiI GAWTC 9 cut(s) 344, 579, 761, 862, 913, 1113, 1239, 1691, 1989
Tru1I TTAA 1 cut(s) 1895
Tru9I TTAA 1 cut(s) 1895
TseFI GTSAC 2 cut(s) 536, 1200
TseI GCWGC 8 cut(s) 131, 193, 239, 404, 605, 719, 824, 1880
Tsp45I GTSAC 2 cut(s) 536, 1200
TspDTI ATGAA 6 cut(s) 705, 806, 866, 908, 1068, 1094
TspGWI ACGGA 2 cut(s) 1611, 1982
VneI GTGCAC 1 cut(s) 936
VpaK11BI GGWCC 2 cut(s) 1733, 1865
XapI RAATTY 3 cut(s) 137, 1442, 1624
XceI RCATGY 3 cut(s) 302, 401, 605
XcmI CCANNNNNNNNNTGG 1 cut(s) 581
XmiI GTMKAC 1 cut(s) 1089
XspI CTAG 3 cut(s) 774, 1031, 1319
ZrmI AGTACT 2 cut(s) 778, 1369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.