Rmu_sc0006065.1_g000003

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006065.1
OG0000319
Physical Location & Seq
Reverse (-)
19249 .. 19635
387 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006065.1_g000003.1.cds

Sequence Viewer

Length: 387 bp
atggttttgcacaacctggggtgctccgttggtgtgccatttttccaacaacaaatcagtcgtgacttcgacaaattggaaccaccggacaaggatacagacaagaccagagaaaaccaacagcaacctcctcgcgatgataatgccttgaaaagaaatgacaccaaactacttgtagcaacgctgattgcaaccgtcacatttgcagcttctttcaccaatgtgcctggaggatttaaagacgacggaatgcctgttttatatgacaaggcgactttcaaagtgtttcagttcttcaatgcagtgtccttctacatctcaattcttgcaatctataacgaatcaactccaataactgtgttatccatccatctacccacaccatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_4 Ank_5 PGG

Protein Analysis

128

Amino Acids

14.34

Weight (kDa)

5.55

Isoelectric Point (pI)

36.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000319)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18590 FvH4_1g18590 FvH4_3g16140 FvH4_3g16141 FvH4_3g16160
malus_domestica MD02G1193600.v1.1 MD04G1020900.v1.1 MD04G1021000.v1.1 MD05G1212100.v1.1 MD05G1212300.v1.1 MD05G1213100.v1.1 MD05G1213400.v1.1 MD10G1197300.v1.1
prunus_persica Prupe.4G144500_v2.0.a1 Prupe.4G144600_v2.0.a1 Prupe.4G144800_v2.0.a1 Prupe.4G144900_v2.0.a1 Prupe.4G145100_v2.0.a1 Prupe.4G145300_v2.0.a1
pyrus_communis pycom02g15730 pycom02g15740 pycom05g19670 pycom05g19680 pycom10g17020 pycom11g27250
rosa_chinensis RchiOBHm_Chr2g0109301 RchiOBHm_Chr2g0109321 RchiOBHm_Chr2g0109341 RchiOBHm_Chr2g0109381 RchiOBHm_Chr3g0482301 RchiOBHm_Chr5g0027111 RchiOBHm_Chr5g0027121 RchiOBHm_Chr5g0027141 RchiOBHm_Chr5g0027181 RchiOBHm_Chr5g0027241
rosa_laevigata RLG00000017731 RLG00000017732 RLG00000032990 RLG00000032992 RLG00000032993 RLG00000032995 RLG00000032997 RLG00000033002
rosa_multiflora Rmu_sc0000135.1_g000002 Rmu_sc0000332.1_g000010 Rmu_sc0000882.1_g000028 Rmu_sc0000882.1_g000032 Rmu_sc0000882.1_g000033 Rmu_sc0000882.1_g000039 Rmu_sc0000882.1_g000043 Rmu_sc0000882.1_g000046 Rmu_sc0006065.1_g000003 Rmu_sc0006065.1_g000012 Rmu_sc0006065.1_g000018 Rmu_sc0006065.1_g000019 Rmu_sc0006065.1_g000022 Rmu_sc0007497.1_g000002 Rmu_sc0013610.1_g000011 Rmu_sc0015338.1_g000006 Rmu_ssc0000357.1_g000035
rosa_roxburghii Rroxscaffold_1G00052250 Rroxscaffold_1G00052280 Rroxscaffold_1G00052290 Rroxscaffold_1G00052310 Rroxscaffold_1G00052330 Rroxscaffold_1G00052360 Rroxscaffold_1G00052380 Rroxscaffold_1G00052390 Rroxscaffold_2G00134310 Rroxscaffold_2G00134330
rosa_rugosa Rorug02G0159400 Rorug05G0097300 Rorug05G0097500 Rorug05G0097600 Rorug05G0097700 Rorug05G0097700 Rorug05G0097700 Rorug05G0122900
rosa_samantha Rh2AG210900 Rh2AG211200 Rh2AG211500 Rh2BG221200 Rh2BG221800 Rh2CG213100 Rh2CG213200 Rh2CG213600 Rh3CG277900 Rh3CG278000 Rh3CG278600 Rh3DG274600 Rh5BG188600 Rh5BG188700 Rh5BG188900 Rh5BG189100 Rh5BG189200 Rh5BG189400 Rh5CG208400 Rh5CG208500 Rh5CG208700 Rh5CG209000 Rh5CG209100 Rh5CG209400 Rh5CG209700 Rh5CG209800 Rh5CG209900 Rh5CG210000 Rh5DG190500 Rh5DG190700 Rh5DG191200 Rh5DG191500
rosa_wichuraiana Rw3G022160 Rw5G017410 Rw5G017420 Rw5G017450 Rw5G017460 Rw5G017470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 135
AgsI TTSAA 3 cut(s) 151, 280, 298
AjnI CCWGG 2 cut(s) 15, 226
AleI CACNNNNGTG 1 cut(s) 221
AluBI AGCT 1 cut(s) 209
AluI AGCT 1 cut(s) 209
Alw21I GWGCWC 1 cut(s) 26
ApeKI GCWGC 1 cut(s) 206
AsuHPI GGTGA 1 cut(s) 208
Bbv12I GWGCWC 1 cut(s) 26
BbvI GCAGC 1 cut(s) 218
BccI CCATC 2 cut(s) 374, 378
BcgI CGANNNNNNTGC 4 cut(s) 113, 125, 147, 159
BciT130I CCWGG 2 cut(s) 17, 228
BciVI GTATCC 1 cut(s) 88
BfuI GTATCC 1 cut(s) 88
BisI GCNGC 1 cut(s) 207
BlsI GCNGC 1 cut(s) 208
Bme1390I CCNGG 2 cut(s) 17, 228
BmiI GGNNCC 1 cut(s) 81
BmrFI CCNGG 2 cut(s) 17, 228
BpmI CTGGAG 1 cut(s) 249
BsaJI CCNNGG 1 cut(s) 16
BsaWI WCCGGW 1 cut(s) 85
BseBI CCWGG 2 cut(s) 17, 228
BseDI CCNNGG 1 cut(s) 16
BseGI GGATG 1 cut(s) 366
BseRI GAGGAG 1 cut(s) 120
BseXI GCAGC 1 cut(s) 218
Bsh1236I CGCG 1 cut(s) 135
BsiHKAI GWGCWC 1 cut(s) 26
BsiSI CCGG 1 cut(s) 86
BsmI GAATGC 1 cut(s) 255
Bsp1286I GDGCHC 1 cut(s) 26
Bsp68I TCGCGA 1 cut(s) 135
BspFNI CGCG 1 cut(s) 135
BspLI GGNNCC 1 cut(s) 81
BssECI CCNNGG 1 cut(s) 16
Bst2UI CCWGG 2 cut(s) 17, 228
Bst4CI ACNGT 2 cut(s) 196, 358
BstF5I GGATG 1 cut(s) 366
BstFNI CGCG 1 cut(s) 135
BstNI CCWGG 2 cut(s) 17, 228
BstSCI CCNGG 2 cut(s) 15, 226
BstUI CGCG 1 cut(s) 135
BstV1I GCAGC 1 cut(s) 218
BsuI GTATCC 1 cut(s) 88
BtgZI GCGATG 1 cut(s) 150
BtsCI GGATG 1 cut(s) 366
BtsI GCAGTG 1 cut(s) 309
BtsIMutI CAGTG 1 cut(s) 309
BtuMI TCGCGA 1 cut(s) 135
CviAII CATG 1 cut(s) 384
CviJI RGCY 1 cut(s) 209
CviKI_1 RGCY 1 cut(s) 209
DraI TTTAAA 1 cut(s) 238
EcoRII CCWGG 2 cut(s) 15, 226
FaeI CATG 1 cut(s) 387
FaiI YATR 4 cut(s) 262, 264, 336, 385
FatI CATG 1 cut(s) 383
Fnu4HI GCNGC 1 cut(s) 207
FokI GGATG 1 cut(s) 353
Fsp4HI GCNGC 1 cut(s) 207
GluI GCNGC 1 cut(s) 207
GsuI CTGGAG 1 cut(s) 249
HapII CCGG 1 cut(s) 86
Hin1II CATG 1 cut(s) 387
HinfI GANTC 1 cut(s) 341
HpaII CCGG 1 cut(s) 86
HphI GGTGA 1 cut(s) 208
Hpy188III TCNNGA 2 cut(s) 62, 134
Hpy99I CGWCG 1 cut(s) 248
HpyAV CCTTC 1 cut(s) 319
HpyCH4III ACNGT 2 cut(s) 196, 358
HpyCH4V TGCA 5 cut(s) 10, 191, 206, 302, 329
Hsp92II CATG 1 cut(s) 387
LmnI GCTCC 1 cut(s) 29
LpnPI CCDG 7 cut(s) 2, 29, 99, 121, 213, 240, 267
Lsp1109I GCAGC 1 cut(s) 218
MaeIII GTNAC 2 cut(s) 62, 196
MboII GAAGA 1 cut(s) 286
MhlI GDGCHC 1 cut(s) 26
MluCI AATT 2 cut(s) 74, 321
MmeI TCCRAC 1 cut(s) 70
MnlI CCTC 3 cut(s) 138, 141, 224
MseI TTAA 1 cut(s) 237
MslI CAYNNNNRTG 1 cut(s) 221
MspI CCGG 1 cut(s) 86
MspR9I CCNGG 2 cut(s) 17, 228
Mva1269I GAATGC 1 cut(s) 255
MvaI CCWGG 2 cut(s) 17, 228
MvnI CGCG 1 cut(s) 135
NlaIII CATG 1 cut(s) 387
NlaIV GGNNCC 1 cut(s) 81
NmuCI GTSAC 2 cut(s) 62, 196
NruI TCGCGA 1 cut(s) 135
OliI CACNNNNGTG 1 cut(s) 221
PctI GAATGC 1 cut(s) 255
PfeI GAWTC 1 cut(s) 341
PkrI GCNGC 1 cut(s) 208
Psp6I CCWGG 2 cut(s) 15, 226
PspGI CCWGG 2 cut(s) 15, 226
PspN4I GGNNCC 1 cut(s) 81
RruI TCGCGA 1 cut(s) 135
RseI CAYNNNNRTG 1 cut(s) 221
SaqAI TTAA 1 cut(s) 237
SatI GCNGC 1 cut(s) 207
ScrFI CCNGG 2 cut(s) 17, 228
SduI GDGCHC 1 cut(s) 26
SetI ASST 3 cut(s) 18, 130, 211
SmiMI CAYNNNNRTG 1 cut(s) 221
Sse9I AATT 2 cut(s) 74, 321
StyD4I CCNGG 2 cut(s) 15, 226
TaaI ACNGT 2 cut(s) 196, 358
TaqI TCGA 1 cut(s) 69
TasI AATT 2 cut(s) 74, 321
TfiI GAWTC 1 cut(s) 341
Tru1I TTAA 1 cut(s) 237
Tru9I TTAA 1 cut(s) 237
TscAI CASTG 1 cut(s) 309
TseFI GTSAC 2 cut(s) 62, 196
TseI GCWGC 1 cut(s) 206
Tsp45I GTSAC 2 cut(s) 62, 196
TspGWI ACGGA 2 cut(s) 16, 261
TspRI CASTG 1 cut(s) 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.