RchiOBHm_Chr5g0027241

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000319
Physical Location & Seq
Forward (+)
21253576 .. 21256063
2488 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ30679

Sequence Viewer

Length: 1779 bp
ATGGATCCTTACCTGTATGAGGCGGCCACGGGCGGAGATGTCAGCTTCTTGAGAAGAATCAGAGACGGTGACGTATTACTAAACCACGATCTTCTCCTTCAGAAAACGCCTAAAGACAACAACATTCTACACATCGCCGTCGAATTCAAACACATTGAGTTTTTCAGACAAGTCCCGAATCATTATTCTCCATCTCTGTTTTGGGCGGCCAACAAAAAGGGCGACACTCCTCTGCACGTGGCCGCTAGAGTAGGCTGTGTTGAAATAGTCGAGTTCCTTATCGATCAGGCGAAAGCGCTGCAGATAAGAGGAGCTGATGAGGAAAGCTGTCATCGAAAGCCGCTACTTCGGATGACGAATTTAGAAATGGATACGGCTCTGCATGTGGCTGTGCGGTACGGTCATCTTGGAGTGGTGGTTCTGTTAATGGAAGCAGATCCTGAACTGTGTTGTTTGACTAACAGGGCAGATGAATCTGTTTTGTTCCTGGCTGCTATGAAGGGGTCTGCAGAGATTGCTCTTTATCTGTTGAACGAGTCTCCGGTGTGTCCTTGTTTTCGAGGGACTAATGGTGTGACGGCTTTGCACGCCGCTGTAACTCGCAGCACGCTCACCAGCAAAGGCATTGTGAGGACAATGGTGTCCAAAAATCCTGAGATGATTAAAAATGTCGATGCACTTGGCTGGACACCGTTACACTATGCAGCATTTAGAGGGAACCTTGAAGCGACTAGAGTGCTAATGCAATGCGATAGTTCTGCATCTTACATCTTAGACAACTCTGGAATGTCAGCTCTCCATGTAGCAGCCCATGCCGGCCACACCAAAATAATGAAGGAGCTGATTCTGTTGCGGCCCGATATTTGTGATCTGCTGAATGACCAAGGCCAAACGGCTTTACATGCTGCAGTATTAGGAGCACGAGTTAATGTTGTGGAGTACATATTGAAGACGCCTGAGCTTGCGGCGATTATAAACGAAGCAGATAAAGATGGAAACACTCCTTTGCACTTAGCTACCCTTCACCAAAATGATAAAATCATAAAAGTTCTGTCTGGCGATCGGAGAGTGGACATGATTGCTATTAATAAGGAATTCTCGATGCCCGCCGACATGTTTCTTGGTGACAATATTGGTGAACAGGAAACAATTCGCCGTGCTATGGTTTTGGACAACCTGGGGTGCTCTGTTGGCGTGCCATTTTTCCAACAACAAATCAGTCGTGACTTCGACAAGTTGGAACCACTAGAGAAGGACACAGACAAGATCAGAGAAAACCAGCTGCGAGCTCGTCCGGATGATCGTAATGCCTTGGAAAGAGATGACACCAAACTACTTGTTGCAACGCTCATTGCAACTGTCACGTTTGCAGCATCTTTCACCAGCGTGCCTGGAGGATTTAAAGATGACGGAATGCCTATTTTATATGAAAAGGCCGCTTTCAAAGTGTTTCAGTTTTTCAATGCAGCGTCCTTCTACATCTCAATTCTTGCAATCTATAATGAATCAACTCCGATAACTGTGTTATCCATCCATCTACCCACACCATCAAGTCTCATTCAGTATTCCATTGGAGGAATGGTGATTGCATTTTTTTCTGGCACATTAGCAGTGCAGCCGAGACGTAGTCACGGAAATTTGTTTGAATTTATATTTGGCACAACTTCGGTTGATATTGTGCTCACGGTGATGTGTGGCACTCTTTTAATATTAGCTATCATCTCTTTGATGATGCCTCTGATTCAAATACGCAGGGGAAAGAGGATCCACTGGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_4 Ank_5 PGG

Protein Analysis

592

Amino Acids

65.62

Weight (kDa)

6.18

Isoelectric Point (pI)

33.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 28 - 96 3e-08 Ankyrin repeats (3 copies)
Ank_2 PF12796 72 - 146 7.9e-09 Ankyrin repeats (3 copies)
Ank PF00023 74 - 96 6.1e-06 Ankyrin repeat
Ank_2 PF12796 122 - 178 2.5e-06 Ankyrin repeats (3 copies)
Ank_2 PF12796 127 - 217 3.3e-09 Ankyrin repeats (3 copies)
Ank_2 PF12796 209 - 282 6.5e-12 Ankyrin repeats (3 copies)
Ank_4 PF13637 266 - 315 4.8e-09 Ankyrin repeats (many copies)
Ank_2 PF12796 289 - 352 7e-10 Ankyrin repeats (3 copies)
PGG PF13962 440 - 537 7.3e-18 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000319)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18590 FvH4_1g18590 FvH4_3g16140 FvH4_3g16141 FvH4_3g16160
malus_domestica MD02G1193600.v1.1 MD04G1020900.v1.1 MD04G1021000.v1.1 MD05G1212100.v1.1 MD05G1212300.v1.1 MD05G1213100.v1.1 MD05G1213400.v1.1 MD10G1197300.v1.1
prunus_persica Prupe.4G144500_v2.0.a1 Prupe.4G144600_v2.0.a1 Prupe.4G144800_v2.0.a1 Prupe.4G144900_v2.0.a1 Prupe.4G145100_v2.0.a1 Prupe.4G145300_v2.0.a1
pyrus_communis pycom02g15730 pycom02g15740 pycom05g19670 pycom05g19680 pycom10g17020 pycom11g27250
rosa_chinensis RchiOBHm_Chr2g0109301 RchiOBHm_Chr2g0109321 RchiOBHm_Chr2g0109341 RchiOBHm_Chr2g0109381 RchiOBHm_Chr3g0482301 RchiOBHm_Chr5g0027111 RchiOBHm_Chr5g0027121 RchiOBHm_Chr5g0027141 RchiOBHm_Chr5g0027181 RchiOBHm_Chr5g0027241
rosa_laevigata RLG00000017731 RLG00000017732 RLG00000032990 RLG00000032992 RLG00000032993 RLG00000032995 RLG00000032997 RLG00000033002
rosa_multiflora Rmu_sc0000135.1_g000002 Rmu_sc0000332.1_g000010 Rmu_sc0000882.1_g000028 Rmu_sc0000882.1_g000032 Rmu_sc0000882.1_g000033 Rmu_sc0000882.1_g000039 Rmu_sc0000882.1_g000043 Rmu_sc0000882.1_g000046 Rmu_sc0006065.1_g000003 Rmu_sc0006065.1_g000012 Rmu_sc0006065.1_g000018 Rmu_sc0006065.1_g000019 Rmu_sc0006065.1_g000022 Rmu_sc0007497.1_g000002 Rmu_sc0013610.1_g000011 Rmu_sc0015338.1_g000006 Rmu_ssc0000357.1_g000035
rosa_roxburghii Rroxscaffold_1G00052250 Rroxscaffold_1G00052280 Rroxscaffold_1G00052290 Rroxscaffold_1G00052310 Rroxscaffold_1G00052330 Rroxscaffold_1G00052360 Rroxscaffold_1G00052380 Rroxscaffold_1G00052390 Rroxscaffold_2G00134310 Rroxscaffold_2G00134330
rosa_rugosa Rorug02G0159400 Rorug05G0097300 Rorug05G0097500 Rorug05G0097600 Rorug05G0097700 Rorug05G0097700 Rorug05G0097700 Rorug05G0122900
rosa_samantha Rh2AG210900 Rh2AG211200 Rh2AG211500 Rh2BG221200 Rh2BG221800 Rh2CG213100 Rh2CG213200 Rh2CG213600 Rh3CG277900 Rh3CG278000 Rh3CG278600 Rh3DG274600 Rh5BG188600 Rh5BG188700 Rh5BG188900 Rh5BG189100 Rh5BG189200 Rh5BG189400 Rh5CG208400 Rh5CG208500 Rh5CG208700 Rh5CG209000 Rh5CG209100 Rh5CG209400 Rh5CG209700 Rh5CG209800 Rh5CG209900 Rh5CG210000 Rh5DG190500 Rh5DG190700 Rh5DG191200 Rh5DG191500
rosa_wichuraiana Rw3G022160 Rw5G017410 Rw5G017420 Rw5G017450 Rw5G017460 Rw5G017470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 974
AasI GACNNNNNNGTC 1 cut(s) 640
AccIII TCCGGA 1 cut(s) 1294
AclWI GGATC 4 cut(s) 12, 431, 1759, 1772
AcoI YGGCCR 4 cut(s) 24, 207, 240, 817
AcsI RAATTY 5 cut(s) 143, 358, 1094, 1636, 1646
AcuI CTGAAG 1 cut(s) 83
AcvI CACGTG 1 cut(s) 238
AcyI GRCGYC 1 cut(s) 953
AfaI GTAC 2 cut(s) 398, 941
AfeI AGCGCT 1 cut(s) 297
AfiI CCNNNNNNNGG 2 cut(s) 19, 1162
AflIII ACRYGT 1 cut(s) 1113
AgsI TTSAA 9 cut(s) 148, 263, 532, 725, 949, 1444, 1462, 1646, 1745
AjnI CCWGG 3 cut(s) 486, 1176, 1390
AjuI GAANNNNNNNTTGG 2 cut(s) 1638, 1670
AleI CACNNNNGTG 1 cut(s) 1385
AloI GAACNNNNNNTCC 2 cut(s) 402, 434
Alw21I GWGCWC 4 cut(s) 922, 1187, 1291, 1683
Alw26I GTCTC 4 cut(s) 57, 543, 1559, 1615
AlwI GGATC 4 cut(s) 12, 431, 1759, 1772
AlwNI CAGNNNCTG 1 cut(s) 440
Aor13HI TCCGGA 1 cut(s) 1294
Aor51HI AGCGCT 1 cut(s) 297
AoxI GGCC 7 cut(s) 24, 207, 240, 817, 854, 886, 1434
ApoI RAATTY 5 cut(s) 143, 358, 1094, 1636, 1646
AseI ATTAAT 1 cut(s) 1086
Asp700I GAANNNNTTC 1 cut(s) 1149
AspLEI GCGC 1 cut(s) 298
AspS9I GGNCC 1 cut(s) 855
AsuHPI GGTGA 8 cut(s) 80, 604, 1016, 1136, 1148, 1372, 1594, 1699
BamHI GGATCC 2 cut(s) 4, 1764
BanII GRGCYC 1 cut(s) 1291
BauI CACGAG 1 cut(s) 921
BbrPI CACGTG 1 cut(s) 238
BbsI GAAGAC 1 cut(s) 956
Bbv12I GWGCWC 4 cut(s) 922, 1187, 1291, 1683
BccI CCATC 5 cut(s) 199, 986, 1538, 1542, 1555
BceAI ACGGC 5 cut(s) 122, 390, 594, 909, 1140
BcgI CGANNNNNNTGC 6 cut(s) 280, 314, 718, 740, 752, 774
BciT130I CCWGG 3 cut(s) 488, 1178, 1392
BciVI GTATCC 1 cut(s) 364
BcoDI GTCTC 4 cut(s) 57, 543, 1559, 1615
BfaI CTAG 3 cut(s) 246, 732, 1247
BfmI CTRYAG 3 cut(s) 299, 507, 906
BfoI RGCGCY 1 cut(s) 299
BfuI GTATCC 1 cut(s) 364
Bme1390I CCNGG 3 cut(s) 488, 1178, 1392
BmgT120I GGNCC 1 cut(s) 855
BmiI GGNNCC 4 cut(s) 6, 719, 1242, 1766
BmrFI CCNGG 3 cut(s) 488, 1178, 1392
BmsI GCATC 5 cut(s) 664, 770, 1092, 1382, 1722
BpiI GAAGAC 1 cut(s) 956
BpmI CTGGAG 1 cut(s) 1413
Bpu10I CCTNAGC 1 cut(s) 957
BpuEI CTTGAG 1 cut(s) 70
Bsa29I ATCGAT 1 cut(s) 282
BsaAI YACGTR 1 cut(s) 238
BsaHI GRCGYC 1 cut(s) 953
BsaJI CCNNGG 4 cut(s) 27, 883, 1177, 1311
BsaWI WCCGGW 2 cut(s) 541, 1294
BsaXI ACNNNNNCTCC 6 cut(s) 402, 432, 909, 939, 1566, 1596
Bsc4I CCNNNNNNNGG 2 cut(s) 19, 1162
Bse118I RCCGGY 1 cut(s) 815
Bse1I ACTGG 1 cut(s) 1775
Bse3DI GCAATG 2 cut(s) 752, 1350
BseAI TCCGGA 1 cut(s) 1294
BseBI CCWGG 3 cut(s) 488, 1178, 1392
BseCI ATCGAT 1 cut(s) 282
BseDI CCNNGG 4 cut(s) 27, 883, 1177, 1311
BseGI GGATG 3 cut(s) 357, 1303, 1530
BseLI CCNNNNNNNGG 2 cut(s) 19, 1162
BseMI GCAATG 2 cut(s) 752, 1350
BseMII CTCAG 2 cut(s) 645, 948
BseNI ACTGG 1 cut(s) 1775
BseRI GAGGAG 2 cut(s) 219, 324
BsgI GTGCAG 2 cut(s) 218, 1634
Bsh1285I CGRYCG 1 cut(s) 1063
BshFI GGCC 7 cut(s) 26, 209, 242, 819, 856, 888, 1436
BshVI ATCGAT 1 cut(s) 282
BsiEI CGRYCG 1 cut(s) 1063
BsiHKAI GWGCWC 4 cut(s) 922, 1187, 1291, 1683
BsiSI CCGG 3 cut(s) 542, 816, 1295
BslFI GGGAC 2 cut(s) 158, 577
BslI CCNNNNNNNGG 2 cut(s) 19, 1162
BsmAI GTCTC 4 cut(s) 57, 543, 1559, 1615
BsmBI CGTCTC 2 cut(s) 57, 1615
BsmFI GGGAC 2 cut(s) 158, 577
BsmI GAATGC 1 cut(s) 1419
BsnI GGCC 7 cut(s) 26, 209, 242, 819, 856, 888, 1436
Bsp1286I GDGCHC 4 cut(s) 922, 1187, 1291, 1683
Bsp13I TCCGGA 1 cut(s) 1294
Bsp143I GATC 9 cut(s) 4, 88, 283, 436, 868, 1060, 1266, 1300, 1764
BspANI GGCC 7 cut(s) 26, 209, 242, 819, 856, 888, 1436
BspCNI CTCAG 2 cut(s) 646, 949
BspDI ATCGAT 1 cut(s) 282
BspEI TCCGGA 1 cut(s) 1294
BspLI GGNNCC 4 cut(s) 6, 719, 1242, 1766
BspMAI CTGCAG 3 cut(s) 303, 511, 910
BspPI GGATC 4 cut(s) 12, 431, 1759, 1772
BsrDI GCAATG 2 cut(s) 752, 1350
BsrFI RCCGGY 1 cut(s) 815
BsrI ACTGG 1 cut(s) 1775
BssAI RCCGGY 1 cut(s) 815
BssECI CCNNGG 4 cut(s) 27, 883, 1177, 1311
BssMI GATC 9 cut(s) 4, 88, 283, 436, 868, 1060, 1266, 1300, 1764
BssNI GRCGYC 1 cut(s) 953
BssSI CACGAG 1 cut(s) 921
BssT1I CCWWGG 2 cut(s) 883, 1311
Bst2BI CACGAG 1 cut(s) 921
Bst2UI CCWGG 3 cut(s) 488, 1178, 1392
Bst4CI ACNGT 7 cut(s) 68, 401, 447, 693, 1360, 1522, 1687
BstACI GRCGYC 1 cut(s) 953
BstAPI GCANNNNNTGC 2 cut(s) 515, 812
BstBAI YACGTR 1 cut(s) 238
BstC8I GCNNGC 8 cut(s) 588, 608, 817, 963, 1107, 1196, 1287, 1388
BstDEI CTNAG 4 cut(s) 654, 772, 957, 1012
BstDSI CCRYGG 1 cut(s) 27
BstENI CCTNNNNNAGG 1 cut(s) 17
BstF5I GGATG 3 cut(s) 357, 1303, 1530
BstH2I RGCGCY 1 cut(s) 299
BstHHI GCGC 1 cut(s) 298
BstKTI GATC 9 cut(s) 7, 91, 286, 439, 871, 1063, 1269, 1303, 1767
BstMAI GTCTC 4 cut(s) 57, 543, 1559, 1615
BstMBI GATC 9 cut(s) 4, 88, 283, 436, 868, 1060, 1266, 1300, 1764
BstMCI CGRYCG 1 cut(s) 1063
BstMWI GCNNNNNNNGC 5 cut(s) 515, 587, 812, 902, 1191
BstNI CCWGG 3 cut(s) 488, 1178, 1392
BstNSI RCATGY 3 cut(s) 386, 905, 1117
BstSCI CCNGG 3 cut(s) 486, 1176, 1390
BstSFI CTRYAG 3 cut(s) 299, 507, 906
BstV2I GAAGAC 1 cut(s) 956
BstX2I RGATCY 3 cut(s) 4, 436, 1764
BstYI RGATCY 3 cut(s) 4, 436, 1764
Bsu15I ATCGAT 1 cut(s) 282
BsuI GTATCC 1 cut(s) 364
BsuRI GGCC 7 cut(s) 26, 209, 242, 819, 856, 888, 1436
BsuTUI ATCGAT 1 cut(s) 282
BtgI CCRYGG 1 cut(s) 27
BtgZI GCGATG 1 cut(s) 118
BtsCI GGATG 3 cut(s) 357, 1303, 1530
BtsI GCAGTG 1 cut(s) 1617
BtsIMutI CAGTG 2 cut(s) 1617, 1768
Cac8I GCNNGC 8 cut(s) 588, 608, 817, 963, 1107, 1196, 1287, 1388
CaiI CAGNNNCTG 1 cut(s) 440
CfoI GCGC 1 cut(s) 298
Cfr10I RCCGGY 1 cut(s) 815
Cfr13I GGNCC 1 cut(s) 855
ClaI ATCGAT 1 cut(s) 282
CseI GACGC 2 cut(s) 961, 1458
Csp6I GTAC 2 cut(s) 397, 940
CspCI CAANNNNNGTGG 1 cut(s) 1757
CviAII CATG 6 cut(s) 383, 800, 812, 902, 1075, 1114
CviQI GTAC 2 cut(s) 397, 940
DdeI CTNAG 4 cut(s) 654, 772, 957, 1012
DpnI GATC 9 cut(s) 6, 90, 285, 438, 870, 1062, 1268, 1302, 1766
DpnII GATC 9 cut(s) 4, 88, 283, 436, 868, 1060, 1266, 1300, 1764
DraI TTTAAA 1 cut(s) 1402
DrdI GACNNNNNNGTC 1 cut(s) 640
DseDI GACNNNNNNGTC 1 cut(s) 640
EaeI YGGCCR 4 cut(s) 24, 207, 240, 817
EciI GGCGGA 1 cut(s) 48
Ecl136II GAGCTC 1 cut(s) 1289
Eco130I CCWWGG 2 cut(s) 883, 1311
Eco24I GRGCYC 1 cut(s) 1291
Eco47III AGCGCT 1 cut(s) 297
Eco53kI GAGCTC 1 cut(s) 1289
Eco57I CTGAAG 1 cut(s) 83
Eco72I CACGTG 1 cut(s) 238
EcoICRI GAGCTC 1 cut(s) 1289
EcoNI CCTNNNNNAGG 1 cut(s) 17
EcoRI GAATTC 2 cut(s) 143, 1094
EcoRII CCWGG 3 cut(s) 486, 1176, 1390
EcoT14I CCWWGG 2 cut(s) 883, 1311
EcoT38I GRGCYC 1 cut(s) 1291
ErhI CCWWGG 2 cut(s) 883, 1311
Esp3I CGTCTC 2 cut(s) 57, 1615
FaeI CATG 6 cut(s) 386, 803, 815, 905, 1078, 1117
FaqI GGGAC 2 cut(s) 158, 577
FatI CATG 6 cut(s) 382, 799, 811, 901, 1074, 1113
FauI CCCGC 1 cut(s) 1114
FokI GGATG 3 cut(s) 364, 1310, 1517
FriOI GRGCYC 1 cut(s) 1291
FspBI CTAG 3 cut(s) 246, 732, 1247
GlaI GCGC 1 cut(s) 297
GsuI CTGGAG 1 cut(s) 1413
HaeII RGCGCY 1 cut(s) 299
HaeIII GGCC 7 cut(s) 26, 209, 242, 819, 856, 888, 1436
HapII CCGG 3 cut(s) 542, 816, 1295
HgaI GACGC 2 cut(s) 961, 1458
HhaI GCGC 1 cut(s) 298
Hin1I GRCGYC 1 cut(s) 953
Hin1II CATG 6 cut(s) 386, 803, 815, 905, 1078, 1117
Hin6I GCGC 1 cut(s) 296
HinP1I GCGC 1 cut(s) 296
HinfI GANTC 7 cut(s) 57, 178, 473, 536, 844, 1505, 1741
HpaII CCGG 3 cut(s) 542, 816, 1295
HphI GGTGA 8 cut(s) 80, 604, 1016, 1136, 1148, 1372, 1594, 1699
Hpy166II GTNNAC 2 cut(s) 1072, 1139
Hpy188I TCNGA 8 cut(s) 62, 102, 167, 351, 1065, 1271, 1515, 1740
Hpy188III TCNNGA 8 cut(s) 49, 175, 440, 653, 783, 1099, 1223, 1295
Hpy8I GTNNAC 2 cut(s) 1072, 1139
Hpy99I CGWCG 1 cut(s) 143
HpyAV CCTTC 6 cut(s) 107, 493, 829, 1031, 1246, 1483
HpyCH4III ACNGT 7 cut(s) 68, 401, 447, 693, 1360, 1522, 1687
HpyCH4IV ACGT 4 cut(s) 72, 237, 1364, 1624
HpyF10VI GCNNNNNNNGC 5 cut(s) 515, 587, 812, 902, 1191
HpyF3I CTNAG 4 cut(s) 654, 772, 957, 1012
HpySE526I ACGT 4 cut(s) 72, 237, 1364, 1624
Hsp92I GRCGYC 1 cut(s) 953
Hsp92II CATG 6 cut(s) 386, 803, 815, 905, 1078, 1117
HspAI GCGC 1 cut(s) 296
Kpn2I TCCGGA 1 cut(s) 1294
KroI GCCGGC 1 cut(s) 815
KroNI GCCGGC 1 cut(s) 817
Kzo9I GATC 9 cut(s) 4, 88, 283, 436, 868, 1060, 1266, 1300, 1764
LmnI GCTCC 3 cut(s) 311, 838, 917
LweI GCATC 5 cut(s) 664, 770, 1092, 1382, 1722
MaeI CTAG 3 cut(s) 246, 732, 1247
MaeII ACGT 4 cut(s) 72, 237, 1364, 1624
MaeIII GTNAC 8 cut(s) 68, 574, 595, 693, 1124, 1223, 1360, 1628
MalI GATC 9 cut(s) 6, 90, 285, 438, 870, 1062, 1268, 1302, 1766
MboI GATC 9 cut(s) 4, 88, 283, 436, 868, 1060, 1266, 1300, 1764
MboII GAAGA 3 cut(s) 66, 83, 961
MflI RGATCY 3 cut(s) 4, 436, 1764
MhlI GDGCHC 4 cut(s) 922, 1187, 1291, 1683
MluCI AATT 7 cut(s) 143, 358, 1094, 1149, 1485, 1636, 1646
MlyI GAGTC 1 cut(s) 545
MmeI TCCRAC 2 cut(s) 1218, 1231
MroI TCCGGA 1 cut(s) 1294
MroNI GCCGGC 1 cut(s) 815
MroXI GAANNNNTTC 1 cut(s) 1149
MseI TTAA 6 cut(s) 425, 663, 927, 1086, 1401, 1706
MslI CAYNNNNRTG 3 cut(s) 1029, 1385, 1688
MspA1I CMGCKG 2 cut(s) 593, 1282
MspI CCGG 3 cut(s) 542, 816, 1295
MspR9I CCNGG 3 cut(s) 488, 1178, 1392
Mva1269I GAATGC 1 cut(s) 1419
MvaI CCWGG 3 cut(s) 488, 1178, 1392
MwoI GCNNNNNNNGC 5 cut(s) 515, 587, 812, 902, 1191
NaeI GCCGGC 1 cut(s) 817
NdeII GATC 9 cut(s) 4, 88, 283, 436, 868, 1060, 1266, 1300, 1764
NgoMIV GCCGGC 1 cut(s) 815
NlaIII CATG 6 cut(s) 386, 803, 815, 905, 1078, 1117
NlaIV GGNNCC 4 cut(s) 6, 719, 1242, 1766
NmeAIII GCCGAG 1 cut(s) 1644
NmuCI GTSAC 6 cut(s) 68, 574, 1124, 1223, 1360, 1628
NspI RCATGY 3 cut(s) 386, 905, 1117
OliI CACNNNNGTG 1 cut(s) 1385
PciI ACATGT 1 cut(s) 1113
PctI GAATGC 1 cut(s) 1419
PdiI GCCGGC 1 cut(s) 817
PdmI GAANNNNTTC 1 cut(s) 1149
PfeI GAWTC 6 cut(s) 57, 178, 473, 844, 1505, 1741
PflFI GACNNNGTC 1 cut(s) 1626
Ple19I CGATCG 1 cut(s) 1063
PleI GAGTC 1 cut(s) 544
PmaCI CACGTG 1 cut(s) 238
PmlI CACGTG 1 cut(s) 238
PpsI GAGTC 1 cut(s) 544
Ppu21I YACGTR 1 cut(s) 238
PscI ACATGT 1 cut(s) 1113
PshBI ATTAAT 1 cut(s) 1086
PsiI TTATAA 1 cut(s) 974
Psp124BI GAGCTC 1 cut(s) 1291
Psp6I CCWGG 3 cut(s) 486, 1176, 1390
PspCI CACGTG 1 cut(s) 238
PspGI CCWGG 3 cut(s) 486, 1176, 1390
PspN4I GGNNCC 4 cut(s) 6, 719, 1242, 1766
PspPI GGNCC 1 cut(s) 855
PstI CTGCAG 3 cut(s) 303, 511, 910
PstNI CAGNNNCTG 1 cut(s) 440
PsuI RGATCY 3 cut(s) 4, 436, 1764
PsyI GACNNNGTC 1 cut(s) 1626
PvuI CGATCG 1 cut(s) 1063
PvuII CAGCTG 1 cut(s) 1282
RsaI GTAC 2 cut(s) 398, 941
RsaNI GTAC 2 cut(s) 397, 940
RseI CAYNNNNRTG 3 cut(s) 1029, 1385, 1688
SacI GAGCTC 1 cut(s) 1291
SaqAI TTAA 6 cut(s) 425, 663, 927, 1086, 1401, 1706
Sau3AI GATC 9 cut(s) 4, 88, 283, 436, 868, 1060, 1266, 1300, 1764
Sau96I GGNCC 1 cut(s) 855
SchI GAGTC 1 cut(s) 545
ScrFI CCNGG 3 cut(s) 488, 1178, 1392
SduI GDGCHC 4 cut(s) 922, 1187, 1291, 1683
SfaNI GCATC 5 cut(s) 664, 770, 1092, 1382, 1722
SfcI CTRYAG 3 cut(s) 299, 507, 906
SmiMI CAYNNNNRTG 3 cut(s) 1029, 1385, 1688
SmlI CTYRAG 1 cut(s) 49
SmoI CTYRAG 1 cut(s) 49
Sse9I AATT 7 cut(s) 143, 358, 1094, 1149, 1485, 1636, 1646
SspI AATATT 2 cut(s) 1132, 1710
SspMI CTAG 3 cut(s) 246, 732, 1247
SstI GAGCTC 1 cut(s) 1291
StyD4I CCNGG 3 cut(s) 486, 1176, 1390
StyI CCWWGG 2 cut(s) 883, 1311
TaaI ACNGT 7 cut(s) 68, 401, 447, 693, 1360, 1522, 1687
TaiI ACGT 4 cut(s) 75, 240, 1367, 1627
TaqI TCGA 8 cut(s) 141, 270, 282, 334, 559, 672, 1100, 1230
TasI AATT 7 cut(s) 143, 358, 1094, 1149, 1485, 1636, 1646
TatI WGTACW 1 cut(s) 939
TauI GCSGC 8 cut(s) 26, 209, 245, 343, 593, 856, 968, 1439
TfiI GAWTC 6 cut(s) 57, 178, 473, 844, 1505, 1741
Tru1I TTAA 6 cut(s) 425, 663, 927, 1086, 1401, 1706
Tru9I TTAA 6 cut(s) 425, 663, 927, 1086, 1401, 1706
TscAI CASTG 2 cut(s) 1617, 1775
TseFI GTSAC 6 cut(s) 68, 574, 1124, 1223, 1360, 1628
Tsp45I GTSAC 6 cut(s) 68, 574, 1124, 1223, 1360, 1628
TspDTI ATGAA 5 cut(s) 486, 512, 848, 1443, 1518
TspGWI ACGGA 2 cut(s) 1425, 1647
TspRI CASTG 2 cut(s) 1617, 1775
Tth111I GACNNNGTC 1 cut(s) 1626
VspI ATTAAT 1 cut(s) 1086
XagI CCTNNNNNAGG 1 cut(s) 17
XapI RAATTY 5 cut(s) 143, 358, 1094, 1636, 1646
XceI RCATGY 3 cut(s) 386, 905, 1117
XcmI CCANNNNNNNNNTGG 2 cut(s) 198, 1576
XmnI GAANNNNTTC 1 cut(s) 1149
XspI CTAG 3 cut(s) 246, 732, 1247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.