Rroxscaffold_1G00052250

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000319
Physical Location & Seq
Reverse (-)
72956105 .. 72959271
3167 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00052250.1

Sequence Viewer

Length: 687 bp
ATGGATACGGCTCTGCATGTGGCTGTGCGGTACGGTCATCGTGAAGTGGTGGTCAGGTTAATGGAAGCCGATCCTGAACTGTGTTGTTTGACTAACAGGGCAGATGAATCGGTTTTGTTCTTGGCTGCTAGGAAGGGGTCTGCAGAGATTGCTCGTTATCTGTTGAACAAGTCTCCGGTGTGTCCTTCTTTTCGAGGGACTAATGGTGTGACGGCTTTGCACGCCGCTGTAACTCGCAGCAACCTCACCAGCGAAGGCATTGTGAAGACTATGGTGTCCAAAAATCCCGAGATGATTAAAAACGTCGATGCACTTGGTCGGACACCGTTACATTATGCAGCATTTAGAGGGAACCTTGAAGCGACTAGAGTGCTAATGCAATGTGATAGTTCTGCATCTTACATCTTAGACAACTCGGAATTTCGTCAGGGCAATCGTAGAGTAGACCTGATTGCTATTAACAAGGATTTCTTGAAGCCCATTGACATGTTTCTTGGTGAAAATATTGGTGAACAGGAAACGATTAGTAGTGGTATGATTTTGCACAACCTGGGGTGCTCCGTTGGTGTGCCATTTTTCCAACAACAAATCAGTCGTGACTTCGACAAATTGGAACCACTAGAGAAGGACACGGACAAGATCGAGAAAACCAGCTGCAAGCTCCTCGGGATGATCGGAATGCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_4 Ank_5 PGG

Protein Analysis

228

Amino Acids

25.25

Weight (kDa)

6.53

Isoelectric Point (pI)

35.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 5 - 94 7.7e-12 Ankyrin repeats (3 copies)
Ank_4 PF13637 5 - 55 4.8e-06 Ankyrin repeats (many copies)
Ank_2 PF12796 67 - 128 4.6e-09 Ankyrin repeats (3 copies)
Ank_4 PF13637 73 - 125 9.2e-06 Ankyrin repeats (many copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000319)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18590 FvH4_1g18590 FvH4_3g16140 FvH4_3g16141 FvH4_3g16160
malus_domestica MD02G1193600.v1.1 MD04G1020900.v1.1 MD04G1021000.v1.1 MD05G1212100.v1.1 MD05G1212300.v1.1 MD05G1213100.v1.1 MD05G1213400.v1.1 MD10G1197300.v1.1
prunus_persica Prupe.4G144500_v2.0.a1 Prupe.4G144600_v2.0.a1 Prupe.4G144800_v2.0.a1 Prupe.4G144900_v2.0.a1 Prupe.4G145100_v2.0.a1 Prupe.4G145300_v2.0.a1
pyrus_communis pycom02g15730 pycom02g15740 pycom05g19670 pycom05g19680 pycom10g17020 pycom11g27250
rosa_chinensis RchiOBHm_Chr2g0109301 RchiOBHm_Chr2g0109321 RchiOBHm_Chr2g0109341 RchiOBHm_Chr2g0109381 RchiOBHm_Chr3g0482301 RchiOBHm_Chr5g0027111 RchiOBHm_Chr5g0027121 RchiOBHm_Chr5g0027141 RchiOBHm_Chr5g0027181 RchiOBHm_Chr5g0027241
rosa_laevigata RLG00000017731 RLG00000017732 RLG00000032990 RLG00000032992 RLG00000032993 RLG00000032995 RLG00000032997 RLG00000033002
rosa_multiflora Rmu_sc0000135.1_g000002 Rmu_sc0000332.1_g000010 Rmu_sc0000882.1_g000028 Rmu_sc0000882.1_g000032 Rmu_sc0000882.1_g000033 Rmu_sc0000882.1_g000039 Rmu_sc0000882.1_g000043 Rmu_sc0000882.1_g000046 Rmu_sc0006065.1_g000003 Rmu_sc0006065.1_g000012 Rmu_sc0006065.1_g000018 Rmu_sc0006065.1_g000019 Rmu_sc0006065.1_g000022 Rmu_sc0007497.1_g000002 Rmu_sc0013610.1_g000011 Rmu_sc0015338.1_g000006 Rmu_ssc0000357.1_g000035
rosa_roxburghii Rroxscaffold_1G00052250 Rroxscaffold_1G00052280 Rroxscaffold_1G00052290 Rroxscaffold_1G00052310 Rroxscaffold_1G00052330 Rroxscaffold_1G00052360 Rroxscaffold_1G00052380 Rroxscaffold_1G00052390 Rroxscaffold_2G00134310 Rroxscaffold_2G00134330
rosa_rugosa Rorug02G0159400 Rorug05G0097300 Rorug05G0097500 Rorug05G0097600 Rorug05G0097700 Rorug05G0097700 Rorug05G0097700 Rorug05G0122900
rosa_samantha Rh2AG210900 Rh2AG211200 Rh2AG211500 Rh2BG221200 Rh2BG221800 Rh2CG213100 Rh2CG213200 Rh2CG213600 Rh3CG277900 Rh3CG278000 Rh3CG278600 Rh3DG274600 Rh5BG188600 Rh5BG188700 Rh5BG188900 Rh5BG189100 Rh5BG189200 Rh5BG189400 Rh5CG208400 Rh5CG208500 Rh5CG208700 Rh5CG209000 Rh5CG209100 Rh5CG209400 Rh5CG209700 Rh5CG209800 Rh5CG209900 Rh5CG210000 Rh5DG190500 Rh5DG190700 Rh5DG191200 Rh5DG191500
rosa_wichuraiana Rw3G022160 Rw5G017410 Rw5G017420 Rw5G017450 Rw5G017460 Rw5G017470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 274
AccI GTMKAC 1 cut(s) 444
AciI CCGC 2 cut(s) 28, 225
AclWI GGATC 1 cut(s) 65
AcsI RAATTY 1 cut(s) 419
AfaI GTAC 1 cut(s) 32
AflIII ACRYGT 1 cut(s) 486
AgsI TTSAA 3 cut(s) 166, 359, 475
AjnI CCWGG 1 cut(s) 549
AluBI AGCT 2 cut(s) 654, 661
AluI AGCT 2 cut(s) 654, 661
Alw21I GWGCWC 1 cut(s) 560
Alw26I GTCTC 1 cut(s) 177
AlwI GGATC 1 cut(s) 65
Ama87I CYCGRG 2 cut(s) 287, 665
ApeKI GCWGC 4 cut(s) 125, 237, 338, 654
ApoI RAATTY 1 cut(s) 419
AsuHPI GGTGA 3 cut(s) 238, 509, 521
AvaI CYCGRG 2 cut(s) 287, 665
BbsI GAAGAC 1 cut(s) 272
Bbv12I GWGCWC 1 cut(s) 560
BbvI GCAGC 4 cut(s) 112, 249, 350, 641
BceAI ACGGC 2 cut(s) 24, 228
BcgI CGANNNNNNTGC 6 cut(s) 90, 124, 352, 386, 646, 680
BciT130I CCWGG 1 cut(s) 551
BcoDI GTCTC 1 cut(s) 177
BfaI CTAG 3 cut(s) 129, 366, 620
BfmI CTRYAG 1 cut(s) 141
BisI GCNGC 5 cut(s) 126, 225, 238, 339, 655
BlsI GCNGC 5 cut(s) 127, 226, 239, 340, 656
Bme1390I CCNGG 1 cut(s) 551
BmeT110I CYCGRG 2 cut(s) 287, 665
BmiI GGNNCC 2 cut(s) 353, 615
BmrFI CCNGG 1 cut(s) 551
BmsI GCATC 2 cut(s) 298, 404
BpiI GAAGAC 1 cut(s) 272
BsaJI CCNNGG 2 cut(s) 550, 664
BsaWI WCCGGW 1 cut(s) 175
Bse3DI GCAATG 1 cut(s) 386
BseBI CCWGG 1 cut(s) 551
BseDI CCNNGG 2 cut(s) 550, 664
BseGI GGATG 1 cut(s) 675
BseMI GCAATG 1 cut(s) 386
BseRI GAGGAG 1 cut(s) 653
BseXI GCAGC 4 cut(s) 112, 249, 350, 641
BsiHKAI GWGCWC 1 cut(s) 560
BsiHKCI CYCGRG 2 cut(s) 287, 665
BsiSI CCGG 1 cut(s) 176
BslFI GGGAC 1 cut(s) 211
BsmAI GTCTC 1 cut(s) 177
BsmFI GGGAC 1 cut(s) 211
BsmI GAATGC 1 cut(s) 684
BsoBI CYCGRG 2 cut(s) 287, 665
Bsp1286I GDGCHC 1 cut(s) 560
Bsp143I GATC 3 cut(s) 70, 639, 672
BspACI CCGC 2 cut(s) 28, 225
BspLI GGNNCC 2 cut(s) 353, 615
BspMAI CTGCAG 1 cut(s) 145
BspPI GGATC 1 cut(s) 65
BsrDI GCAATG 1 cut(s) 386
BssECI CCNNGG 2 cut(s) 550, 664
BssMI GATC 3 cut(s) 70, 639, 672
Bst2UI CCWGG 1 cut(s) 551
Bst4CI ACNGT 3 cut(s) 35, 81, 327
BstAPI GCANNNNNTGC 1 cut(s) 149
BstC8I GCNNGC 2 cut(s) 222, 659
BstDEI CTNAG 2 cut(s) 406, 684
BstF5I GGATG 1 cut(s) 675
BstKTI GATC 3 cut(s) 73, 642, 675
BstMAI GTCTC 1 cut(s) 177
BstMBI GATC 3 cut(s) 70, 639, 672
BstMWI GCNNNNNNNGC 2 cut(s) 149, 221
BstNI CCWGG 1 cut(s) 551
BstNSI RCATGY 2 cut(s) 20, 490
BstSCI CCNGG 1 cut(s) 549
BstSFI CTRYAG 1 cut(s) 141
BstV1I GCAGC 4 cut(s) 112, 249, 350, 641
BstV2I GAAGAC 1 cut(s) 272
BtsCI GGATG 1 cut(s) 675
Cac8I GCNNGC 2 cut(s) 222, 659
Csp6I GTAC 1 cut(s) 31
CviAII CATG 2 cut(s) 17, 487
CviJI RGCY 8 cut(s) 11, 23, 68, 125, 215, 478, 654, 661
CviKI_1 RGCY 8 cut(s) 11, 23, 68, 125, 215, 478, 654, 661
CviQI GTAC 1 cut(s) 31
DdeI CTNAG 2 cut(s) 406, 684
DpnI GATC 3 cut(s) 72, 641, 674
DpnII GATC 3 cut(s) 70, 639, 672
DrdI GACNNNNNNGTC 1 cut(s) 274
DseDI GACNNNNNNGTC 1 cut(s) 274
Eco88I CYCGRG 2 cut(s) 287, 665
EcoRII CCWGG 1 cut(s) 549
FaeI CATG 2 cut(s) 20, 490
FaiI YATR 5 cut(s) 18, 272, 336, 488, 536
FalI AAGNNNNNCTT 2 cut(s) 455, 487
FaqI GGGAC 1 cut(s) 211
FatI CATG 2 cut(s) 16, 486
FblI GTMKAC 1 cut(s) 444
Fnu4HI GCNGC 5 cut(s) 126, 225, 238, 339, 655
FokI GGATG 1 cut(s) 682
Fsp4HI GCNGC 5 cut(s) 126, 225, 238, 339, 655
FspBI CTAG 3 cut(s) 129, 366, 620
GluI GCNGC 5 cut(s) 126, 225, 238, 339, 655
HapII CCGG 1 cut(s) 176
Hin1II CATG 2 cut(s) 20, 490
HinfI GANTC 1 cut(s) 107
HpaII CCGG 1 cut(s) 176
HphI GGTGA 3 cut(s) 238, 509, 521
Hpy166II GTNNAC 2 cut(s) 445, 512
Hpy188I TCNGA 3 cut(s) 321, 418, 677
Hpy188III TCNNGA 7 cut(s) 41, 74, 287, 472, 596, 643, 667
Hpy8I GTNNAC 2 cut(s) 445, 512
Hpy99I CGWCG 1 cut(s) 308
HpyAV CCTTC 4 cut(s) 127, 195, 248, 619
HpyCH4III ACNGT 3 cut(s) 35, 81, 327
HpyCH4IV ACGT 1 cut(s) 303
HpyCH4V TGCA 9 cut(s) 16, 143, 220, 311, 338, 379, 395, 544, 657
HpyF10VI GCNNNNNNNGC 2 cut(s) 149, 221
HpyF3I CTNAG 2 cut(s) 406, 684
HpySE526I ACGT 1 cut(s) 303
Hsp92II CATG 2 cut(s) 20, 490
Kzo9I GATC 3 cut(s) 70, 639, 672
LmnI GCTCC 2 cut(s) 563, 666
Lsp1109I GCAGC 4 cut(s) 112, 249, 350, 641
LweI GCATC 2 cut(s) 298, 404
MaeI CTAG 3 cut(s) 129, 366, 620
MaeII ACGT 1 cut(s) 303
MaeIII GTNAC 4 cut(s) 208, 229, 327, 596
MalI GATC 3 cut(s) 72, 641, 674
MboI GATC 3 cut(s) 70, 639, 672
MboII GAAGA 1 cut(s) 277
MhlI GDGCHC 1 cut(s) 560
MluCI AATT 2 cut(s) 419, 608
MmeI TCCRAC 2 cut(s) 299, 604
MnlI CCTC 4 cut(s) 188, 254, 341, 674
MseI TTAA 3 cut(s) 59, 297, 459
MslI CAYNNNNRTG 1 cut(s) 485
MspA1I CMGCKG 2 cut(s) 227, 654
MspI CCGG 1 cut(s) 176
MspR9I CCNGG 1 cut(s) 551
Mva1269I GAATGC 1 cut(s) 684
MvaI CCWGG 1 cut(s) 551
MwoI GCNNNNNNNGC 2 cut(s) 149, 221
NdeII GATC 3 cut(s) 70, 639, 672
NlaIII CATG 2 cut(s) 20, 490
NlaIV GGNNCC 2 cut(s) 353, 615
NmuCI GTSAC 2 cut(s) 208, 596
NspI RCATGY 2 cut(s) 20, 490
PciI ACATGT 1 cut(s) 486
PctI GAATGC 1 cut(s) 684
PfeI GAWTC 1 cut(s) 107
PkrI GCNGC 5 cut(s) 127, 226, 239, 340, 656
PscI ACATGT 1 cut(s) 486
Psp6I CCWGG 1 cut(s) 549
PspGI CCWGG 1 cut(s) 549
PspN4I GGNNCC 2 cut(s) 353, 615
PstI CTGCAG 1 cut(s) 145
PvuII CAGCTG 1 cut(s) 654
RsaI GTAC 1 cut(s) 32
RsaNI GTAC 1 cut(s) 31
RseI CAYNNNNRTG 1 cut(s) 485
SaqAI TTAA 3 cut(s) 59, 297, 459
SatI GCNGC 5 cut(s) 126, 225, 238, 339, 655
Sau3AI GATC 3 cut(s) 70, 639, 672
ScrFI CCNGG 1 cut(s) 551
SduI GDGCHC 1 cut(s) 560
SetI ASST 8 cut(s) 59, 246, 306, 357, 450, 552, 656, 663
SfaNI GCATC 2 cut(s) 298, 404
SfcI CTRYAG 1 cut(s) 141
SmiMI CAYNNNNRTG 1 cut(s) 485
Sse9I AATT 2 cut(s) 419, 608
SsiI CCGC 2 cut(s) 28, 225
SspI AATATT 1 cut(s) 505
SspMI CTAG 3 cut(s) 129, 366, 620
StyD4I CCNGG 1 cut(s) 549
TaaI ACNGT 3 cut(s) 35, 81, 327
TaiI ACGT 1 cut(s) 306
TaqI TCGA 4 cut(s) 193, 306, 603, 642
TasI AATT 2 cut(s) 419, 608
TauI GCSGC 1 cut(s) 227
TfiI GAWTC 1 cut(s) 107
Tru1I TTAA 3 cut(s) 59, 297, 459
Tru9I TTAA 3 cut(s) 59, 297, 459
TseFI GTSAC 2 cut(s) 208, 596
TseI GCWGC 4 cut(s) 125, 237, 338, 654
Tsp45I GTSAC 2 cut(s) 208, 596
TspDTI ATGAA 1 cut(s) 120
TspGWI ACGGA 2 cut(s) 550, 647
XapI RAATTY 1 cut(s) 419
XceI RCATGY 2 cut(s) 20, 490
XmiI GTMKAC 1 cut(s) 444
XspI CTAG 3 cut(s) 129, 366, 620
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.