Rmu_sc0006065.1_g000018

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006065.1
OG0000319
Physical Location & Seq
Reverse (-)
98903 .. 99926
1024 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006065.1_g000018.1.cds

Sequence Viewer

Length: 792 bp
atgtcagagattgtgaagatcatggtgttcaaatatcctgatatgatcaaaaaagctgatgaacttgggtggacacccttacactacgcagcatttagagggaacgataaagccgttacatggttgatggaatcagacaagtctagtacttcctatatctcggacaaatgtggaatgacagctcttcatgtcgcagcatataaaggccacatcgaagtaatgaagaaactgattcaatatcagcctgatacttgtgagtgcctcaatgccaaagaccaaacgattcttcatgtcgcagttttaggtgcacaaagtgatgttgtgaagtacatactggagctacccgagcttccgagacttatagatcaagcagataaagaaggacatacccctttgcatctagctgtcatgggtcaaaagcatgaaattacaagaatgctgaaacgggactgtggagtcgacaatacttctcttcataagggattctcttttgacaattttcttggtgaagataccaaaatacagatcccgtggccaatgtgtcagatcgaagctagaccttattgcatatcacatctccactcccatcaactcccaatatttactttggcattgacattgaagtttttgcagacagcttcagctctgtgcaaccggaaaagggaagatccaaacttgtcacccaataacaaagccgaacaagatggagaaaaaggaatctcagtcagagtgggtgaagagggaagctcggtcatactgggacgatacaaactagtaaggattaatttttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_4 Ank_5 PGG

Protein Analysis

263

Amino Acids

29.71

Weight (kDa)

7.16

Isoelectric Point (pI)

31.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000319)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18590 FvH4_1g18590 FvH4_3g16140 FvH4_3g16141 FvH4_3g16160
malus_domestica MD02G1193600.v1.1 MD04G1020900.v1.1 MD04G1021000.v1.1 MD05G1212100.v1.1 MD05G1212300.v1.1 MD05G1213100.v1.1 MD05G1213400.v1.1 MD10G1197300.v1.1
prunus_persica Prupe.4G144500_v2.0.a1 Prupe.4G144600_v2.0.a1 Prupe.4G144800_v2.0.a1 Prupe.4G144900_v2.0.a1 Prupe.4G145100_v2.0.a1 Prupe.4G145300_v2.0.a1
pyrus_communis pycom02g15730 pycom02g15740 pycom05g19670 pycom05g19680 pycom10g17020 pycom11g27250
rosa_chinensis RchiOBHm_Chr2g0109301 RchiOBHm_Chr2g0109321 RchiOBHm_Chr2g0109341 RchiOBHm_Chr2g0109381 RchiOBHm_Chr3g0482301 RchiOBHm_Chr5g0027111 RchiOBHm_Chr5g0027121 RchiOBHm_Chr5g0027141 RchiOBHm_Chr5g0027181 RchiOBHm_Chr5g0027241
rosa_laevigata RLG00000017731 RLG00000017732 RLG00000032990 RLG00000032992 RLG00000032993 RLG00000032995 RLG00000032997 RLG00000033002
rosa_multiflora Rmu_sc0000135.1_g000002 Rmu_sc0000332.1_g000010 Rmu_sc0000882.1_g000028 Rmu_sc0000882.1_g000032 Rmu_sc0000882.1_g000033 Rmu_sc0000882.1_g000039 Rmu_sc0000882.1_g000043 Rmu_sc0000882.1_g000046 Rmu_sc0006065.1_g000003 Rmu_sc0006065.1_g000012 Rmu_sc0006065.1_g000018 Rmu_sc0006065.1_g000019 Rmu_sc0006065.1_g000022 Rmu_sc0007497.1_g000002 Rmu_sc0013610.1_g000011 Rmu_sc0015338.1_g000006 Rmu_ssc0000357.1_g000035
rosa_roxburghii Rroxscaffold_1G00052250 Rroxscaffold_1G00052280 Rroxscaffold_1G00052290 Rroxscaffold_1G00052310 Rroxscaffold_1G00052330 Rroxscaffold_1G00052360 Rroxscaffold_1G00052380 Rroxscaffold_1G00052390 Rroxscaffold_2G00134310 Rroxscaffold_2G00134330
rosa_rugosa Rorug02G0159400 Rorug05G0097300 Rorug05G0097500 Rorug05G0097600 Rorug05G0097700 Rorug05G0097700 Rorug05G0097700 Rorug05G0122900
rosa_samantha Rh2AG210900 Rh2AG211200 Rh2AG211500 Rh2BG221200 Rh2BG221800 Rh2CG213100 Rh2CG213200 Rh2CG213600 Rh3CG277900 Rh3CG278000 Rh3CG278600 Rh3DG274600 Rh5BG188600 Rh5BG188700 Rh5BG188900 Rh5BG189100 Rh5BG189200 Rh5BG189400 Rh5CG208400 Rh5CG208500 Rh5CG208700 Rh5CG209000 Rh5CG209100 Rh5CG209400 Rh5CG209700 Rh5CG209800 Rh5CG209900 Rh5CG210000 Rh5DG190500 Rh5DG190700 Rh5DG191200 Rh5DG191500
rosa_wichuraiana Rw3G022160 Rw5G017410 Rw5G017420 Rw5G017450 Rw5G017460 Rw5G017470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 455
AccI GTMKAC 1 cut(s) 459
AclWI GGATC 2 cut(s) 520, 662
AcoI YGGCCR 1 cut(s) 533
AcuI CTGAAG 1 cut(s) 624
AdeI CACNNNGTG 1 cut(s) 314
AfaI GTAC 2 cut(s) 148, 329
AfiI CCNNNNNNNGG 2 cut(s) 120, 661
AgsI TTSAA 3 cut(s) 31, 236, 622
AhlI ACTAGT 1 cut(s) 772
AjuI GAANNNNNNNTTGG 2 cut(s) 270, 302
AluBI AGCT 9 cut(s) 56, 182, 340, 349, 404, 554, 638, 644, 747
AluI AGCT 9 cut(s) 56, 182, 340, 349, 404, 554, 638, 644, 747
Alw21I GWGCWC 1 cut(s) 310
Alw26I GTCTC 1 cut(s) 349
Alw44I GTGCAC 1 cut(s) 306
AlwI GGATC 2 cut(s) 520, 662
Ama87I CYCGRG 1 cut(s) 344
AoxI GGCC 2 cut(s) 205, 533
ApaLI GTGCAC 1 cut(s) 306
ApeKI GCWGC 2 cut(s) 89, 194
AseI ATTAAT 1 cut(s) 783
AsuHPI GGTGA 3 cut(s) 518, 672, 746
AvaI CYCGRG 1 cut(s) 344
BaeGI GKGCMC 1 cut(s) 310
BalI TGGCCA 1 cut(s) 535
Bbv12I GWGCWC 1 cut(s) 310
BbvI GCAGC 2 cut(s) 101, 206
BccI CCATC 3 cut(s) 121, 594, 698
BceAI ACGGC 1 cut(s) 98
BclI TGATCA 1 cut(s) 45
BcoDI GTCTC 1 cut(s) 349
BcuI ACTAGT 1 cut(s) 772
BfaI CTAG 4 cut(s) 144, 401, 555, 773
BisI GCNGC 2 cut(s) 90, 195
BlsI GCNGC 2 cut(s) 91, 196
BmcAI AGTACT 1 cut(s) 148
BmeT110I CYCGRG 1 cut(s) 344
BmrI ACTGGG 1 cut(s) 767
BmsI GCATC 1 cut(s) 406
BmuI ACTGGG 1 cut(s) 767
BplI GAGNNNNNCTC 2 cut(s) 731, 763
BpmI CTGGAG 1 cut(s) 356
BsaJI CCNNGG 1 cut(s) 530
BsaWI WCCGGW 1 cut(s) 654
Bsc4I CCNNNNNNNGG 2 cut(s) 120, 661
Bse1I ACTGG 2 cut(s) 339, 762
BseDI CCNNGG 1 cut(s) 530
BseLI CCNNNNNNNGG 2 cut(s) 120, 661
BseMII CTCAG 1 cut(s) 735
BseNI ACTGG 2 cut(s) 339, 762
BseSI GKGCMC 1 cut(s) 310
BseXI GCAGC 2 cut(s) 101, 206
BshFI GGCC 2 cut(s) 207, 535
BsiHKAI GWGCWC 1 cut(s) 310
BsiHKCI CYCGRG 1 cut(s) 344
BsiSI CCGG 1 cut(s) 655
BslFI GGGAC 2 cut(s) 461, 774
BslI CCNNNNNNNGG 2 cut(s) 120, 661
BsmAI GTCTC 1 cut(s) 349
BsmFI GGGAC 2 cut(s) 461, 774
BsmI GAATGC 1 cut(s) 441
BsnI GGCC 2 cut(s) 207, 535
BsoBI CYCGRG 1 cut(s) 344
Bsp1286I GDGCHC 1 cut(s) 310
Bsp143I GATC 6 cut(s) 18, 45, 364, 525, 546, 667
BspANI GGCC 2 cut(s) 207, 535
BspCNI CTCAG 1 cut(s) 734
BspPI GGATC 2 cut(s) 520, 662
BspQI GCTCTTC 1 cut(s) 189
BsrI ACTGG 2 cut(s) 339, 762
BssECI CCNNGG 1 cut(s) 530
BssMI GATC 6 cut(s) 18, 45, 364, 525, 546, 667
Bst4CI ACNGT 1 cut(s) 452
Bst6I CTCTTC 3 cut(s) 189, 477, 732
BstDEI CTNAG 1 cut(s) 721
BstDSI CCRYGG 1 cut(s) 530
BstKTI GATC 6 cut(s) 21, 48, 367, 528, 549, 670
BstMAI GTCTC 1 cut(s) 349
BstMBI GATC 6 cut(s) 18, 45, 364, 525, 546, 667
BstMWI GCNNNNNNNGC 1 cut(s) 346
BstSLI GKGCMC 1 cut(s) 310
BstV1I GCAGC 2 cut(s) 101, 206
BstX2I RGATCY 2 cut(s) 525, 667
BstYI RGATCY 2 cut(s) 525, 667
BsuRI GGCC 2 cut(s) 207, 535
BtgI CCRYGG 1 cut(s) 530
Csp6I GTAC 2 cut(s) 147, 328
CviAII CATG 6 cut(s) 22, 120, 188, 290, 409, 422
CviQI GTAC 2 cut(s) 147, 328
DdeI CTNAG 1 cut(s) 721
DpnI GATC 6 cut(s) 20, 47, 366, 527, 548, 669
DpnII GATC 6 cut(s) 18, 45, 364, 525, 546, 667
DraIII CACNNNGTG 1 cut(s) 314
DrdI GACNNNNNNGTC 1 cut(s) 455
DseDI GACNNNNNNGTC 1 cut(s) 455
EaeI YGGCCR 1 cut(s) 533
Eam1104I CTCTTC 3 cut(s) 189, 477, 732
EarI CTCTTC 3 cut(s) 189, 477, 732
Eco57I CTGAAG 1 cut(s) 624
Eco88I CYCGRG 1 cut(s) 344
FaeI CATG 6 cut(s) 25, 123, 191, 293, 412, 425
FaqI GGGAC 2 cut(s) 461, 774
FatI CATG 6 cut(s) 21, 119, 187, 289, 408, 421
FbaI TGATCA 1 cut(s) 45
FblI GTMKAC 1 cut(s) 459
Fnu4HI GCNGC 2 cut(s) 90, 195
Fsp4HI GCNGC 2 cut(s) 90, 195
FspBI CTAG 4 cut(s) 144, 401, 555, 773
GluI GCNGC 2 cut(s) 90, 195
GsuI CTGGAG 1 cut(s) 356
HaeIII GGCC 2 cut(s) 207, 535
HapII CCGG 1 cut(s) 655
Hin1II CATG 6 cut(s) 25, 123, 191, 293, 412, 425
HincII GTYRAC 1 cut(s) 460
HindII GTYRAC 1 cut(s) 460
HinfI GANTC 6 cut(s) 131, 232, 283, 456, 483, 717
HpaII CCGG 1 cut(s) 655
HphI GGTGA 3 cut(s) 518, 672, 746
Hpy166II GTNNAC 3 cut(s) 72, 308, 460
Hpy188I TCNGA 6 cut(s) 7, 136, 163, 354, 546, 728
Hpy188III TCNNGA 1 cut(s) 38
Hpy8I GTNNAC 3 cut(s) 72, 308, 460
HpyAV CCTTC 1 cut(s) 374
HpyCH4III ACNGT 1 cut(s) 452
HpyCH4V TGCA 5 cut(s) 308, 397, 567, 631, 651
HpyF10VI GCNNNNNNNGC 1 cut(s) 346
HpyF3I CTNAG 1 cut(s) 721
Hsp92II CATG 6 cut(s) 25, 123, 191, 293, 412, 425
Ksp22I TGATCA 1 cut(s) 45
Kzo9I GATC 6 cut(s) 18, 45, 364, 525, 546, 667
LguI GCTCTTC 1 cut(s) 189
LmnI GCTCC 1 cut(s) 337
LpnPI CCDG 5 cut(s) 51, 258, 320, 668, 743
Lsp1109I GCAGC 2 cut(s) 101, 206
LweI GCATC 1 cut(s) 406
MaeI CTAG 4 cut(s) 144, 401, 555, 773
MaeIII GTNAC 2 cut(s) 115, 678
MalI GATC 6 cut(s) 20, 47, 366, 527, 548, 669
MboI GATC 6 cut(s) 18, 45, 364, 525, 546, 667
MboII GAAGA 8 cut(s) 28, 176, 235, 278, 464, 521, 677, 749
MflI RGATCY 2 cut(s) 525, 667
MhlI GDGCHC 1 cut(s) 310
MlsI TGGCCA 1 cut(s) 535
MluCI AATT 3 cut(s) 426, 496, 784
MluNI TGGCCA 1 cut(s) 535
MlyI GAGTC 1 cut(s) 465
MnlI CCTC 3 cut(s) 92, 272, 733
Mox20I TGGCCA 1 cut(s) 535
MscI TGGCCA 1 cut(s) 535
MseI TTAA 1 cut(s) 783
Msp20I TGGCCA 1 cut(s) 535
MspI CCGG 1 cut(s) 655
Mva1269I GAATGC 1 cut(s) 441
MwoI GCNNNNNNNGC 1 cut(s) 346
NdeII GATC 6 cut(s) 18, 45, 364, 525, 546, 667
NlaIII CATG 6 cut(s) 25, 123, 191, 293, 412, 425
NmuCI GTSAC 1 cut(s) 678
PciSI GCTCTTC 1 cut(s) 189
PcsI WCGNNNNNNNCGW 1 cut(s) 111
PctI GAATGC 1 cut(s) 441
PfeI GAWTC 5 cut(s) 131, 232, 283, 483, 717
PkrI GCNGC 2 cut(s) 91, 196
PleI GAGTC 1 cut(s) 464
PpsI GAGTC 1 cut(s) 464
PshBI ATTAAT 1 cut(s) 783
PsuI RGATCY 2 cut(s) 525, 667
RsaI GTAC 2 cut(s) 148, 329
RsaNI GTAC 2 cut(s) 147, 328
SalI GTCGAC 1 cut(s) 458
SapI GCTCTTC 1 cut(s) 189
SaqAI TTAA 1 cut(s) 783
SatI GCNGC 2 cut(s) 90, 195
Sau3AI GATC 6 cut(s) 18, 45, 364, 525, 546, 667
ScaI AGTACT 1 cut(s) 148
SchI GAGTC 1 cut(s) 465
SduI GDGCHC 1 cut(s) 310
SfaNI GCATC 1 cut(s) 406
SpeI ACTAGT 1 cut(s) 772
Sse9I AATT 3 cut(s) 426, 496, 784
SspI AATATT 1 cut(s) 600
SspMI CTAG 4 cut(s) 144, 401, 555, 773
TaaI ACNGT 1 cut(s) 452
TaqI TCGA 3 cut(s) 213, 459, 549
TaqII GACCGA 1 cut(s) 739
TasI AATT 3 cut(s) 426, 496, 784
TatI WGTACW 2 cut(s) 146, 327
TfiI GAWTC 5 cut(s) 131, 232, 283, 483, 717
Tru1I TTAA 1 cut(s) 783
Tru9I TTAA 1 cut(s) 783
TseFI GTSAC 1 cut(s) 678
TseI GCWGC 2 cut(s) 89, 194
Tsp45I GTSAC 1 cut(s) 678
TspDTI ATGAA 6 cut(s) 75, 176, 236, 278, 438, 464
VneI GTGCAC 1 cut(s) 306
VspI ATTAAT 1 cut(s) 783
XmiI GTMKAC 1 cut(s) 459
XspI CTAG 4 cut(s) 144, 401, 555, 773
ZrmI AGTACT 1 cut(s) 148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.