Rroxscaffold_1G00052330

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000319
Physical Location & Seq
Reverse (-)
73092447 .. 73095880
3434 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00052330.1

Sequence Viewer

Length: 792 bp
ATGGATCCTTACCTGTATGAGGCGGCGACGCTCGGAGATGTCAGCTTCTTGAGAAGAATCAGAGACGGTGACGTATTACTAAACCACGATCTTCTCCTTCAGAAAACGCCTAAAGACAACAACATTCTACACATCGCCGCCGAATTCAAACACAATGAATTTTTCGGACAAGTCCCGAATCACTATTCTCCAGCTCTGTTTTGGGCGGCCAACAAAAAGGGCGACACTCCTCTGCACGTGGCCGCTAGAGTAGGCTGTGATAAAATAGTCAAGTTCCTCATCGATCAGGCGAAAGCGCTGCACATAAGAGGAGCTGATGAGGAAAGCTGTCATCGAAAGCCGCTGCTTCGGATGACGAATTTAGAAATGGATACGGCTCTGCATGTGGCTGTGCGGTACGGTCATCGTGAAGTGGTGGTCAGGTTAATGGAAGCCGATCCTGAACTGTGTTGTTTGACTAACAGGGCAGATGAATCGGTTTTGTTCTTGGCTGCTAGGAAGGGGTCTGCAGAGATTGCTCGTTATCTGTTGAACAAGTCTCCGGTGTGTCCTTCTTTTCGAGGGACTAATGGTGTGACGGCTTTGCACGCCGCTGTAACTCGCAGCAACCTCACCAGCGAAGGCAATCGTAGAGTGGACAGGATTGCTATTAACAAGGATTTCTTGAAGCCCATTGACATGTTTCTTGGTGAAAATATTGGTGAACAGGAAACAATTCGCAGTGGTATGATTTTGCACAACTTTGGGGCGCTCCGTTGGGGTGCCATTTTTCCAACAACAAATCAGTCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_4 Ank_5 PGG

Protein Analysis

263

Amino Acids

29.48

Weight (kDa)

8.27

Isoelectric Point (pI)

40.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 28 - 96 2.2e-07 Ankyrin repeats (3 copies)
Ank_2 PF12796 43 - 146 1.3e-10 Ankyrin repeats (3 copies)
Ank PF00023 74 - 97 7.8e-06 Ankyrin repeat
Ank_2 PF12796 127 - 203 5.9e-11 Ankyrin repeats (3 copies)
Ank_4 PF13637 127 - 177 6.1e-06 Ankyrin repeats (many copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000319)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18590 FvH4_1g18590 FvH4_3g16140 FvH4_3g16141 FvH4_3g16160
malus_domestica MD02G1193600.v1.1 MD04G1020900.v1.1 MD04G1021000.v1.1 MD05G1212100.v1.1 MD05G1212300.v1.1 MD05G1213100.v1.1 MD05G1213400.v1.1 MD10G1197300.v1.1
prunus_persica Prupe.4G144500_v2.0.a1 Prupe.4G144600_v2.0.a1 Prupe.4G144800_v2.0.a1 Prupe.4G144900_v2.0.a1 Prupe.4G145100_v2.0.a1 Prupe.4G145300_v2.0.a1
pyrus_communis pycom02g15730 pycom02g15740 pycom05g19670 pycom05g19680 pycom10g17020 pycom11g27250
rosa_chinensis RchiOBHm_Chr2g0109301 RchiOBHm_Chr2g0109321 RchiOBHm_Chr2g0109341 RchiOBHm_Chr2g0109381 RchiOBHm_Chr3g0482301 RchiOBHm_Chr5g0027111 RchiOBHm_Chr5g0027121 RchiOBHm_Chr5g0027141 RchiOBHm_Chr5g0027181 RchiOBHm_Chr5g0027241
rosa_laevigata RLG00000017731 RLG00000017732 RLG00000032990 RLG00000032992 RLG00000032993 RLG00000032995 RLG00000032997 RLG00000033002
rosa_multiflora Rmu_sc0000135.1_g000002 Rmu_sc0000332.1_g000010 Rmu_sc0000882.1_g000028 Rmu_sc0000882.1_g000032 Rmu_sc0000882.1_g000033 Rmu_sc0000882.1_g000039 Rmu_sc0000882.1_g000043 Rmu_sc0000882.1_g000046 Rmu_sc0006065.1_g000003 Rmu_sc0006065.1_g000012 Rmu_sc0006065.1_g000018 Rmu_sc0006065.1_g000019 Rmu_sc0006065.1_g000022 Rmu_sc0007497.1_g000002 Rmu_sc0013610.1_g000011 Rmu_sc0015338.1_g000006 Rmu_ssc0000357.1_g000035
rosa_roxburghii Rroxscaffold_1G00052250 Rroxscaffold_1G00052280 Rroxscaffold_1G00052290 Rroxscaffold_1G00052310 Rroxscaffold_1G00052330 Rroxscaffold_1G00052360 Rroxscaffold_1G00052380 Rroxscaffold_1G00052390 Rroxscaffold_2G00134310 Rroxscaffold_2G00134330
rosa_rugosa Rorug02G0159400 Rorug05G0097300 Rorug05G0097500 Rorug05G0097600 Rorug05G0097700 Rorug05G0097700 Rorug05G0097700 Rorug05G0122900
rosa_samantha Rh2AG210900 Rh2AG211200 Rh2AG211500 Rh2BG221200 Rh2BG221800 Rh2CG213100 Rh2CG213200 Rh2CG213600 Rh3CG277900 Rh3CG278000 Rh3CG278600 Rh3DG274600 Rh5BG188600 Rh5BG188700 Rh5BG188900 Rh5BG189100 Rh5BG189200 Rh5BG189400 Rh5CG208400 Rh5CG208500 Rh5CG208700 Rh5CG209000 Rh5CG209100 Rh5CG209400 Rh5CG209700 Rh5CG209800 Rh5CG209900 Rh5CG210000 Rh5DG190500 Rh5DG190700 Rh5DG191200 Rh5DG191500
rosa_wichuraiana Rw3G022160 Rw5G017410 Rw5G017420 Rw5G017450 Rw5G017460 Rw5G017470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 761
AciI CCGC 7 cut(s) 23, 138, 206, 243, 341, 394, 591
AclWI GGATC 2 cut(s) 12, 431
AcoI YGGCCR 2 cut(s) 207, 240
AcsI RAATTY 3 cut(s) 143, 158, 358
AcuI CTGAAG 1 cut(s) 83
AcvI CACGTG 1 cut(s) 238
AfaI GTAC 1 cut(s) 398
AfeI AGCGCT 1 cut(s) 297
AfiI CCNNNNNNNGG 1 cut(s) 19
AflIII ACRYGT 1 cut(s) 678
AgsI TTSAA 3 cut(s) 148, 532, 667
AluBI AGCT 4 cut(s) 45, 194, 314, 327
AluI AGCT 4 cut(s) 45, 194, 314, 327
Alw26I GTCTC 2 cut(s) 57, 543
AlwI GGATC 2 cut(s) 12, 431
Aor51HI AGCGCT 1 cut(s) 297
AoxI GGCC 2 cut(s) 207, 240
ApeKI GCWGC 4 cut(s) 298, 343, 491, 603
ApoI RAATTY 3 cut(s) 143, 158, 358
Asp700I GAANNNNTTC 1 cut(s) 714
AspLEI GCGC 2 cut(s) 298, 751
AsuHPI GGTGA 4 cut(s) 80, 604, 701, 713
BamHI GGATCC 1 cut(s) 4
BanI GGYRCC 1 cut(s) 761
BbrPI CACGTG 1 cut(s) 238
BbvI GCAGC 4 cut(s) 285, 330, 478, 615
BceAI ACGGC 2 cut(s) 390, 594
BcgI CGANNNNNNTGC 4 cut(s) 280, 314, 456, 490
BciVI GTATCC 1 cut(s) 364
BcoDI GTCTC 2 cut(s) 57, 543
BfaI CTAG 2 cut(s) 246, 495
BfmI CTRYAG 1 cut(s) 507
BfoI RGCGCY 2 cut(s) 299, 752
BfuI GTATCC 1 cut(s) 364
BmiI GGNNCC 2 cut(s) 6, 763
BpmI CTGGAG 1 cut(s) 174
BpuEI CTTGAG 1 cut(s) 70
Bsa29I ATCGAT 1 cut(s) 282
BsaAI YACGTR 1 cut(s) 238
BsaWI WCCGGW 1 cut(s) 541
Bsc4I CCNNNNNNNGG 1 cut(s) 19
BseCI ATCGAT 1 cut(s) 282
BseGI GGATG 1 cut(s) 357
BseLI CCNNNNNNNGG 1 cut(s) 19
BseRI GAGGAG 2 cut(s) 219, 324
BseXI GCAGC 4 cut(s) 285, 330, 478, 615
BsgI GTGCAG 2 cut(s) 218, 284
BshFI GGCC 2 cut(s) 209, 242
BshNI GGYRCC 1 cut(s) 761
BshVI ATCGAT 1 cut(s) 282
BsiSI CCGG 1 cut(s) 542
BslFI GGGAC 2 cut(s) 158, 577
BslI CCNNNNNNNGG 1 cut(s) 19
BsmAI GTCTC 2 cut(s) 57, 543
BsmBI CGTCTC 1 cut(s) 57
BsmFI GGGAC 2 cut(s) 158, 577
BsnI GGCC 2 cut(s) 209, 242
Bsp143I GATC 4 cut(s) 4, 88, 283, 436
BspACI CCGC 7 cut(s) 23, 138, 206, 243, 341, 394, 591
BspANI GGCC 2 cut(s) 209, 242
BspDI ATCGAT 1 cut(s) 282
BspLI GGNNCC 2 cut(s) 6, 763
BspMAI CTGCAG 1 cut(s) 511
BspPI GGATC 2 cut(s) 12, 431
BspT107I GGYRCC 1 cut(s) 761
BssMI GATC 4 cut(s) 4, 88, 283, 436
Bst4CI ACNGT 3 cut(s) 68, 401, 447
BstAPI GCANNNNNTGC 1 cut(s) 515
BstBAI YACGTR 1 cut(s) 238
BstC8I GCNNGC 1 cut(s) 588
BstENI CCTNNNNNAGG 1 cut(s) 17
BstF5I GGATG 1 cut(s) 357
BstH2I RGCGCY 2 cut(s) 299, 752
BstHHI GCGC 2 cut(s) 298, 751
BstKTI GATC 4 cut(s) 7, 91, 286, 439
BstMAI GTCTC 2 cut(s) 57, 543
BstMBI GATC 4 cut(s) 4, 88, 283, 436
BstMWI GCNNNNNNNGC 2 cut(s) 515, 587
BstNSI RCATGY 2 cut(s) 386, 682
BstSFI CTRYAG 1 cut(s) 507
BstV1I GCAGC 4 cut(s) 285, 330, 478, 615
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
Bsu15I ATCGAT 1 cut(s) 282
BsuI GTATCC 1 cut(s) 364
BsuRI GGCC 2 cut(s) 209, 242
BsuTUI ATCGAT 1 cut(s) 282
BtgZI GCGATG 1 cut(s) 118
BtsCI GGATG 1 cut(s) 357
BtsI GCAGTG 1 cut(s) 727
BtsIMutI CAGTG 1 cut(s) 727
Cac8I GCNNGC 1 cut(s) 588
CfoI GCGC 2 cut(s) 298, 751
ClaI ATCGAT 1 cut(s) 282
CseI GACGC 1 cut(s) 37
Csp6I GTAC 1 cut(s) 397
CviAII CATG 2 cut(s) 383, 679
CviQI GTAC 1 cut(s) 397
DpnI GATC 4 cut(s) 6, 90, 285, 438
DpnII GATC 4 cut(s) 4, 88, 283, 436
EaeI YGGCCR 2 cut(s) 207, 240
Eco47III AGCGCT 1 cut(s) 297
Eco57I CTGAAG 1 cut(s) 83
Eco72I CACGTG 1 cut(s) 238
EcoNI CCTNNNNNAGG 1 cut(s) 17
EcoRI GAATTC 1 cut(s) 143
Esp3I CGTCTC 1 cut(s) 57
FaeI CATG 2 cut(s) 386, 682
FaiI YATR 5 cut(s) 18, 305, 384, 680, 728
FalI AAGNNNNNCTT 2 cut(s) 647, 679
FaqI GGGAC 2 cut(s) 158, 577
FatI CATG 2 cut(s) 382, 678
FokI GGATG 1 cut(s) 364
FspBI CTAG 2 cut(s) 246, 495
GlaI GCGC 2 cut(s) 297, 750
GsuI CTGGAG 1 cut(s) 174
HaeII RGCGCY 2 cut(s) 299, 752
HaeIII GGCC 2 cut(s) 209, 242
HapII CCGG 1 cut(s) 542
HgaI GACGC 1 cut(s) 37
HhaI GCGC 2 cut(s) 298, 751
Hin1II CATG 2 cut(s) 386, 682
Hin6I GCGC 2 cut(s) 296, 749
HinP1I GCGC 2 cut(s) 296, 749
HinfI GANTC 3 cut(s) 57, 178, 473
HpaII CCGG 1 cut(s) 542
HphI GGTGA 4 cut(s) 80, 604, 701, 713
Hpy166II GTNNAC 2 cut(s) 637, 704
Hpy188I TCNGA 5 cut(s) 35, 62, 102, 167, 351
Hpy188III TCNNGA 6 cut(s) 49, 175, 407, 440, 664, 789
Hpy8I GTNNAC 2 cut(s) 637, 704
Hpy99I CGWCG 1 cut(s) 31
HpyAV CCTTC 4 cut(s) 107, 493, 561, 614
HpyCH4III ACNGT 3 cut(s) 68, 401, 447
HpyCH4IV ACGT 2 cut(s) 72, 237
HpyCH4V TGCA 6 cut(s) 235, 301, 382, 509, 586, 736
HpyF10VI GCNNNNNNNGC 2 cut(s) 515, 587
HpySE526I ACGT 2 cut(s) 72, 237
Hsp92II CATG 2 cut(s) 386, 682
HspAI GCGC 2 cut(s) 296, 749
Kzo9I GATC 4 cut(s) 4, 88, 283, 436
LmnI GCTCC 2 cut(s) 311, 756
Lsp1109I GCAGC 4 cut(s) 285, 330, 478, 615
MaeI CTAG 2 cut(s) 246, 495
MaeII ACGT 2 cut(s) 72, 237
MaeIII GTNAC 3 cut(s) 68, 574, 595
MalI GATC 4 cut(s) 6, 90, 285, 438
MboI GATC 4 cut(s) 4, 88, 283, 436
MboII GAAGA 2 cut(s) 66, 83
MflI RGATCY 1 cut(s) 4
MluCI AATT 4 cut(s) 143, 158, 358, 714
MnlI CCTC 7 cut(s) 13, 240, 287, 302, 313, 554, 620
MroXI GAANNNNTTC 1 cut(s) 714
MseI TTAA 2 cut(s) 425, 651
MslI CAYNNNNRTG 1 cut(s) 677
MspA1I CMGCKG 2 cut(s) 343, 593
MspI CCGG 1 cut(s) 542
MwoI GCNNNNNNNGC 2 cut(s) 515, 587
NdeII GATC 4 cut(s) 4, 88, 283, 436
NlaIII CATG 2 cut(s) 386, 682
NlaIV GGNNCC 2 cut(s) 6, 763
NmuCI GTSAC 2 cut(s) 68, 574
NspI RCATGY 2 cut(s) 386, 682
PciI ACATGT 1 cut(s) 678
PdmI GAANNNNTTC 1 cut(s) 714
PfeI GAWTC 3 cut(s) 57, 178, 473
PmaCI CACGTG 1 cut(s) 238
PmlI CACGTG 1 cut(s) 238
Ppu21I YACGTR 1 cut(s) 238
PscI ACATGT 1 cut(s) 678
PspCI CACGTG 1 cut(s) 238
PspN4I GGNNCC 2 cut(s) 6, 763
PstI CTGCAG 1 cut(s) 511
PsuI RGATCY 1 cut(s) 4
RsaI GTAC 1 cut(s) 398
RsaNI GTAC 1 cut(s) 397
RseI CAYNNNNRTG 1 cut(s) 677
SaqAI TTAA 2 cut(s) 425, 651
Sau3AI GATC 4 cut(s) 4, 88, 283, 436
SetI ASST 9 cut(s) 15, 47, 75, 196, 240, 316, 329, 425, 612
SfcI CTRYAG 1 cut(s) 507
SmiMI CAYNNNNRTG 1 cut(s) 677
SmlI CTYRAG 1 cut(s) 49
SmoI CTYRAG 1 cut(s) 49
Sse9I AATT 4 cut(s) 143, 158, 358, 714
SsiI CCGC 7 cut(s) 23, 138, 206, 243, 341, 394, 591
SspI AATATT 1 cut(s) 697
SspMI CTAG 2 cut(s) 246, 495
TaaI ACNGT 3 cut(s) 68, 401, 447
TaiI ACGT 2 cut(s) 75, 240
TaqI TCGA 3 cut(s) 282, 334, 559
TasI AATT 4 cut(s) 143, 158, 358, 714
TauI GCSGC 6 cut(s) 26, 140, 209, 245, 343, 593
TfiI GAWTC 3 cut(s) 57, 178, 473
Tru1I TTAA 2 cut(s) 425, 651
Tru9I TTAA 2 cut(s) 425, 651
TscAI CASTG 1 cut(s) 727
TseFI GTSAC 2 cut(s) 68, 574
TseI GCWGC 4 cut(s) 298, 343, 491, 603
Tsp45I GTSAC 2 cut(s) 68, 574
TspDTI ATGAA 2 cut(s) 171, 486
TspGWI ACGGA 1 cut(s) 743
TspRI CASTG 1 cut(s) 727
XagI CCTNNNNNAGG 1 cut(s) 17
XapI RAATTY 3 cut(s) 143, 158, 358
XceI RCATGY 2 cut(s) 386, 682
XcmI CCANNNNNNNNNTGG 1 cut(s) 198
XmnI GAANNNNTTC 1 cut(s) 714
XspI CTAG 2 cut(s) 246, 495
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.