Rmu_sc0013610.1_g000011

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013610.1
OG0000319
Physical Location & Seq
Forward (+)
68374 .. 68859
486 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013610.1_g000011.1.cds

Sequence Viewer

Length: 486 bp
atggatccttacctgtatgaggcggcgacgctcggagatgtcagcttcatgagaagaatcagagacggcgacgtattactaaaccacgatcttctccttcagaaaacgcctaaagacaacaacatccttcacatcgccgccgaattcaaacagattgagtttttcagacaaatcccgagtcattattctcctgctctgttttgggcggccaacaaaaagggcgacactcctctgcacgtggccgctagagtaggctgtgatgaaatagtcgagttccttatcgatcaggcgaaagtgctgcacataagaggagctgatgaggaaagctgtcatcgaaagtcgctacttcggatgacgaatttagaaatggatacggctctgcatgtggctgtgcggtacggtcatcttggagtggtggttatgttaatggaagctatttccttattaagattgtttaagcaaaaatattttagtaatttgaattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_4 Ank_5 PGG

Protein Analysis

161

Amino Acids

18.46

Weight (kDa)

6.7

Isoelectric Point (pI)

41.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000319)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18590 FvH4_1g18590 FvH4_3g16140 FvH4_3g16141 FvH4_3g16160
malus_domestica MD02G1193600.v1.1 MD04G1020900.v1.1 MD04G1021000.v1.1 MD05G1212100.v1.1 MD05G1212300.v1.1 MD05G1213100.v1.1 MD05G1213400.v1.1 MD10G1197300.v1.1
prunus_persica Prupe.4G144500_v2.0.a1 Prupe.4G144600_v2.0.a1 Prupe.4G144800_v2.0.a1 Prupe.4G144900_v2.0.a1 Prupe.4G145100_v2.0.a1 Prupe.4G145300_v2.0.a1
pyrus_communis pycom02g15730 pycom02g15740 pycom05g19670 pycom05g19680 pycom10g17020 pycom11g27250
rosa_chinensis RchiOBHm_Chr2g0109301 RchiOBHm_Chr2g0109321 RchiOBHm_Chr2g0109341 RchiOBHm_Chr2g0109381 RchiOBHm_Chr3g0482301 RchiOBHm_Chr5g0027111 RchiOBHm_Chr5g0027121 RchiOBHm_Chr5g0027141 RchiOBHm_Chr5g0027181 RchiOBHm_Chr5g0027241
rosa_laevigata RLG00000017731 RLG00000017732 RLG00000032990 RLG00000032992 RLG00000032993 RLG00000032995 RLG00000032997 RLG00000033002
rosa_multiflora Rmu_sc0000135.1_g000002 Rmu_sc0000332.1_g000010 Rmu_sc0000882.1_g000028 Rmu_sc0000882.1_g000032 Rmu_sc0000882.1_g000033 Rmu_sc0000882.1_g000039 Rmu_sc0000882.1_g000043 Rmu_sc0000882.1_g000046 Rmu_sc0006065.1_g000003 Rmu_sc0006065.1_g000012 Rmu_sc0006065.1_g000018 Rmu_sc0006065.1_g000019 Rmu_sc0006065.1_g000022 Rmu_sc0007497.1_g000002 Rmu_sc0013610.1_g000011 Rmu_sc0015338.1_g000006 Rmu_ssc0000357.1_g000035
rosa_roxburghii Rroxscaffold_1G00052250 Rroxscaffold_1G00052280 Rroxscaffold_1G00052290 Rroxscaffold_1G00052310 Rroxscaffold_1G00052330 Rroxscaffold_1G00052360 Rroxscaffold_1G00052380 Rroxscaffold_1G00052390 Rroxscaffold_2G00134310 Rroxscaffold_2G00134330
rosa_rugosa Rorug02G0159400 Rorug05G0097300 Rorug05G0097500 Rorug05G0097600 Rorug05G0097700 Rorug05G0097700 Rorug05G0097700 Rorug05G0122900
rosa_samantha Rh2AG210900 Rh2AG211200 Rh2AG211500 Rh2BG221200 Rh2BG221800 Rh2CG213100 Rh2CG213200 Rh2CG213600 Rh3CG277900 Rh3CG278000 Rh3CG278600 Rh3DG274600 Rh5BG188600 Rh5BG188700 Rh5BG188900 Rh5BG189100 Rh5BG189200 Rh5BG189400 Rh5CG208400 Rh5CG208500 Rh5CG208700 Rh5CG209000 Rh5CG209100 Rh5CG209400 Rh5CG209700 Rh5CG209800 Rh5CG209900 Rh5CG210000 Rh5DG190500 Rh5DG190700 Rh5DG191200 Rh5DG191500
rosa_wichuraiana Rw3G022160 Rw5G017410 Rw5G017420 Rw5G017450 Rw5G017460 Rw5G017470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 23, 138, 206, 243, 394
AclWI GGATC 1 cut(s) 12
AcoI YGGCCR 2 cut(s) 207, 240
AcsI RAATTY 2 cut(s) 143, 358
AcuI CTGAAG 1 cut(s) 83
AcvI CACGTG 1 cut(s) 238
AfaI GTAC 1 cut(s) 398
AfiI CCNNNNNNNGG 1 cut(s) 19
AgsI TTSAA 2 cut(s) 148, 481
AluBI AGCT 4 cut(s) 45, 314, 327, 434
AluI AGCT 4 cut(s) 45, 314, 327, 434
Alw26I GTCTC 1 cut(s) 57
AlwI GGATC 1 cut(s) 12
Ama87I CYCGRG 1 cut(s) 175
AoxI GGCC 2 cut(s) 207, 240
ApeKI GCWGC 1 cut(s) 298
ApoI RAATTY 2 cut(s) 143, 358
ArsI GACNNNNNNTTYG 2 cut(s) 163, 195
AvaI CYCGRG 1 cut(s) 175
BamHI GGATCC 1 cut(s) 4
BbrPI CACGTG 1 cut(s) 238
BbvI GCAGC 1 cut(s) 285
BceAI ACGGC 2 cut(s) 82, 390
BcgI CGANNNNNNTGC 2 cut(s) 280, 314
BciVI GTATCC 1 cut(s) 364
BcoDI GTCTC 1 cut(s) 57
BfaI CTAG 1 cut(s) 246
BfuI GTATCC 1 cut(s) 364
BisI GCNGC 5 cut(s) 24, 138, 207, 243, 299
BlsI GCNGC 5 cut(s) 25, 139, 208, 244, 300
BmeT110I CYCGRG 1 cut(s) 175
BmiI GGNNCC 1 cut(s) 6
Bsa29I ATCGAT 1 cut(s) 282
BsaAI YACGTR 1 cut(s) 238
BsaXI ACNNNNNCTCC 2 cut(s) 402, 432
Bsc4I CCNNNNNNNGG 1 cut(s) 19
BseCI ATCGAT 1 cut(s) 282
BseGI GGATG 2 cut(s) 123, 357
BseLI CCNNNNNNNGG 1 cut(s) 19
BseRI GAGGAG 2 cut(s) 219, 324
BseXI GCAGC 1 cut(s) 285
BsgI GTGCAG 2 cut(s) 218, 284
BshFI GGCC 2 cut(s) 209, 242
BshVI ATCGAT 1 cut(s) 282
BsiHKCI CYCGRG 1 cut(s) 175
BslI CCNNNNNNNGG 1 cut(s) 19
BsmAI GTCTC 1 cut(s) 57
BsmBI CGTCTC 1 cut(s) 57
BsnI GGCC 2 cut(s) 209, 242
BsoBI CYCGRG 1 cut(s) 175
Bsp143I GATC 3 cut(s) 4, 88, 283
BspACI CCGC 5 cut(s) 23, 138, 206, 243, 394
BspANI GGCC 2 cut(s) 209, 242
BspDI ATCGAT 1 cut(s) 282
BspHI TCATGA 1 cut(s) 48
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 1 cut(s) 12
BssMI GATC 3 cut(s) 4, 88, 283
Bst4CI ACNGT 1 cut(s) 401
BstBAI YACGTR 1 cut(s) 238
BstENI CCTNNNNNAGG 1 cut(s) 17
BstF5I GGATG 2 cut(s) 123, 357
BstKTI GATC 3 cut(s) 7, 91, 286
BstMAI GTCTC 1 cut(s) 57
BstMBI GATC 3 cut(s) 4, 88, 283
BstNSI RCATGY 1 cut(s) 386
BstV1I GCAGC 1 cut(s) 285
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
Bsu15I ATCGAT 1 cut(s) 282
BsuI GTATCC 1 cut(s) 364
BsuRI GGCC 2 cut(s) 209, 242
BsuTUI ATCGAT 1 cut(s) 282
BtgZI GCGATG 1 cut(s) 118
BtsCI GGATG 2 cut(s) 123, 357
CciI TCATGA 1 cut(s) 48
ClaI ATCGAT 1 cut(s) 282
CseI GACGC 1 cut(s) 37
Csp6I GTAC 1 cut(s) 397
CviAII CATG 2 cut(s) 49, 383
CviJI RGCY 9 cut(s) 45, 209, 242, 255, 314, 327, 377, 389, 434
CviKI_1 RGCY 9 cut(s) 45, 209, 242, 255, 314, 327, 377, 389, 434
CviQI GTAC 1 cut(s) 397
DpnI GATC 3 cut(s) 6, 90, 285
DpnII GATC 3 cut(s) 4, 88, 283
EaeI YGGCCR 2 cut(s) 207, 240
Eco57I CTGAAG 1 cut(s) 83
Eco72I CACGTG 1 cut(s) 238
Eco88I CYCGRG 1 cut(s) 175
EcoNI CCTNNNNNAGG 1 cut(s) 17
EcoRI GAATTC 1 cut(s) 143
Esp3I CGTCTC 1 cut(s) 57
FaeI CATG 2 cut(s) 52, 386
FaiI YATR 5 cut(s) 18, 50, 305, 384, 422
FatI CATG 2 cut(s) 48, 382
Fnu4HI GCNGC 5 cut(s) 24, 138, 207, 243, 299
FokI GGATG 2 cut(s) 110, 364
Fsp4HI GCNGC 5 cut(s) 24, 138, 207, 243, 299
FspBI CTAG 1 cut(s) 246
GluI GCNGC 5 cut(s) 24, 138, 207, 243, 299
HaeIII GGCC 2 cut(s) 209, 242
HgaI GACGC 1 cut(s) 37
Hin1II CATG 2 cut(s) 52, 386
HinfI GANTC 2 cut(s) 57, 178
Hpy188I TCNGA 5 cut(s) 35, 62, 102, 167, 351
Hpy188III TCNNGA 2 cut(s) 49, 175
Hpy99I CGWCG 2 cut(s) 31, 74
HpyAV CCTTC 2 cut(s) 107, 137
HpyCH4III ACNGT 1 cut(s) 401
HpyCH4IV ACGT 2 cut(s) 72, 237
HpyCH4V TGCA 3 cut(s) 235, 301, 382
HpySE526I ACGT 2 cut(s) 72, 237
Hsp92II CATG 2 cut(s) 52, 386
Kzo9I GATC 3 cut(s) 4, 88, 283
LmnI GCTCC 1 cut(s) 311
LpnPI CCDG 3 cut(s) 26, 204, 272
Lsp1109I GCAGC 1 cut(s) 285
MaeI CTAG 1 cut(s) 246
MaeII ACGT 2 cut(s) 72, 237
MalI GATC 3 cut(s) 6, 90, 285
MboI GATC 3 cut(s) 4, 88, 283
MboII GAAGA 2 cut(s) 66, 83
MflI RGATCY 1 cut(s) 4
MluCI AATT 4 cut(s) 143, 358, 475, 481
MlyI GAGTC 1 cut(s) 187
MnlI CCTC 4 cut(s) 13, 240, 302, 313
MseI TTAA 3 cut(s) 425, 446, 456
NdeII GATC 3 cut(s) 4, 88, 283
NlaIII CATG 2 cut(s) 52, 386
NlaIV GGNNCC 1 cut(s) 6
NspI RCATGY 1 cut(s) 386
PagI TCATGA 1 cut(s) 48
PfeI GAWTC 1 cut(s) 57
PkrI GCNGC 5 cut(s) 25, 139, 208, 244, 300
PleI GAGTC 1 cut(s) 186
PmaCI CACGTG 1 cut(s) 238
PmlI CACGTG 1 cut(s) 238
PpsI GAGTC 1 cut(s) 186
Ppu21I YACGTR 1 cut(s) 238
PspCI CACGTG 1 cut(s) 238
PspN4I GGNNCC 1 cut(s) 6
PsuI RGATCY 1 cut(s) 4
RsaI GTAC 1 cut(s) 398
RsaNI GTAC 1 cut(s) 397
SaqAI TTAA 3 cut(s) 425, 446, 456
SatI GCNGC 5 cut(s) 24, 138, 207, 243, 299
Sau3AI GATC 3 cut(s) 4, 88, 283
SchI GAGTC 1 cut(s) 187
SetI ASST 7 cut(s) 15, 47, 75, 240, 316, 329, 436
Sse9I AATT 4 cut(s) 143, 358, 475, 481
SsiI CCGC 5 cut(s) 23, 138, 206, 243, 394
SspI AATATT 1 cut(s) 467
SspMI CTAG 1 cut(s) 246
TaaI ACNGT 1 cut(s) 401
TaiI ACGT 2 cut(s) 75, 240
TaqI TCGA 3 cut(s) 270, 282, 334
TasI AATT 4 cut(s) 143, 358, 475, 481
TauI GCSGC 4 cut(s) 26, 140, 209, 245
TfiI GAWTC 1 cut(s) 57
Tru1I TTAA 3 cut(s) 425, 446, 456
Tru9I TTAA 3 cut(s) 425, 446, 456
TseI GCWGC 1 cut(s) 298
TspDTI ATGAA 2 cut(s) 37, 276
XagI CCTNNNNNAGG 1 cut(s) 17
XapI RAATTY 2 cut(s) 143, 358
XceI RCATGY 1 cut(s) 386
XspI CTAG 1 cut(s) 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.