MD02G1193600.v1.1

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0000319
Physical Location & Seq
Forward (+)
18430092 .. 18431221
1130 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1193600.v1.1.491

Sequence Viewer

Length: 969 bp
ATGTTTCCATACAATTTAGGCATCGTGAAGATGATGGTTTCCAGGAACCCTGAAATAATCAAAGAAGTTGATGCCAACGGATGGACTCCATTACACTATGCAGCATTGACAGGGAACGTTAGAGCAACTCGATTATTGATGCAACAAGATAGTTCTATTTCTTACATCTTGGACAAATCTGGAATGTCAGCTCTTCATGTTGCGGCGTACGCAGGCCGCCGGAAAGTGATGGAAGTGCTGACTCAAGTCCGGCCTGATACTTGTGAATTGGTCAATCACAAAGGCCAAACGGTTCTGCACGCAGCAGTTTTAGGTGGGCAGTTTGTTACTGTCAGATACATTTTGAGGACGTCTAAGTTTGCAGGACTTATAAATGAAGCCGACAACGACGGAAACACGCCCTTGCATCTAGCTGCTATTCAACGTAGTCTTGCGGTCATAAAAACTATGGCAAGAAACCCTAGAGTGGATAATACTGCTATCAATAATCAACACTTGAAAGCTGCTGACATTTTTCTTGGGGACAATATTGAACTGGACACCTTCGGTAGACGTGTGGCTTTGAAGCTTCTGGGCCGCCCTGTTGGTGTGCCGATCTTCCAACAACAAATCCGCCTCGACTTTATGAAACTGGAATCAACAGAGAAAAACGATACACCAAACAACATTTTGGATATTGCAGAGAAGAGAGCACTGCTAGCTGATTGGGATGAATCGAGCAAGTTTGACACCCATCTAGTGGTAGCGATGCTTATTGCAACCGTCACGTTTGCAGCAGCTTTCACCCTGCCTGGAGGATTCAAAGGCAACGGAATGCCCGTCTTGTACAAAAGGGCATTTTTCCAAGTGTTTGTGGTATTCGACAGCATCTCCTTCTTTCTATCAATTTTTGTGGTGTTTAACCATTTTATGTTGAAAACTGTCTCACGAACTGCTCTAGCAACACCTTCAAGTACAAATTTGCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_4 Ank_5 PGG

Protein Analysis

323

Amino Acids

35.76

Weight (kDa)

9.49

Isoelectric Point (pI)

35.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 7 - 82 2.8e-12 Ankyrin repeats (3 copies)
Ank_2 PF12796 90 - 153 3.2e-09 Ankyrin repeats (3 copies)
PGG PF13962 242 - 307 5.6e-20 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000319)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18590 FvH4_1g18590 FvH4_3g16140 FvH4_3g16141 FvH4_3g16160
malus_domestica MD02G1193600.v1.1 MD04G1020900.v1.1 MD04G1021000.v1.1 MD05G1212100.v1.1 MD05G1212300.v1.1 MD05G1213100.v1.1 MD05G1213400.v1.1 MD10G1197300.v1.1
prunus_persica Prupe.4G144500_v2.0.a1 Prupe.4G144600_v2.0.a1 Prupe.4G144800_v2.0.a1 Prupe.4G144900_v2.0.a1 Prupe.4G145100_v2.0.a1 Prupe.4G145300_v2.0.a1
pyrus_communis pycom02g15730 pycom02g15740 pycom05g19670 pycom05g19680 pycom10g17020 pycom11g27250
rosa_chinensis RchiOBHm_Chr2g0109301 RchiOBHm_Chr2g0109321 RchiOBHm_Chr2g0109341 RchiOBHm_Chr2g0109381 RchiOBHm_Chr3g0482301 RchiOBHm_Chr5g0027111 RchiOBHm_Chr5g0027121 RchiOBHm_Chr5g0027141 RchiOBHm_Chr5g0027181 RchiOBHm_Chr5g0027241
rosa_laevigata RLG00000017731 RLG00000017732 RLG00000032990 RLG00000032992 RLG00000032993 RLG00000032995 RLG00000032997 RLG00000033002
rosa_multiflora Rmu_sc0000135.1_g000002 Rmu_sc0000332.1_g000010 Rmu_sc0000882.1_g000028 Rmu_sc0000882.1_g000032 Rmu_sc0000882.1_g000033 Rmu_sc0000882.1_g000039 Rmu_sc0000882.1_g000043 Rmu_sc0000882.1_g000046 Rmu_sc0006065.1_g000003 Rmu_sc0006065.1_g000012 Rmu_sc0006065.1_g000018 Rmu_sc0006065.1_g000019 Rmu_sc0006065.1_g000022 Rmu_sc0007497.1_g000002 Rmu_sc0013610.1_g000011 Rmu_sc0015338.1_g000006 Rmu_ssc0000357.1_g000035
rosa_roxburghii Rroxscaffold_1G00052250 Rroxscaffold_1G00052280 Rroxscaffold_1G00052290 Rroxscaffold_1G00052310 Rroxscaffold_1G00052330 Rroxscaffold_1G00052360 Rroxscaffold_1G00052380 Rroxscaffold_1G00052390 Rroxscaffold_2G00134310 Rroxscaffold_2G00134330
rosa_rugosa Rorug02G0159400 Rorug05G0097300 Rorug05G0097500 Rorug05G0097600 Rorug05G0097700 Rorug05G0097700 Rorug05G0097700 Rorug05G0122900
rosa_samantha Rh2AG210900 Rh2AG211200 Rh2AG211500 Rh2BG221200 Rh2BG221800 Rh2CG213100 Rh2CG213200 Rh2CG213600 Rh3CG277900 Rh3CG278000 Rh3CG278600 Rh3DG274600 Rh5BG188600 Rh5BG188700 Rh5BG188900 Rh5BG189100 Rh5BG189200 Rh5BG189400 Rh5CG208400 Rh5CG208500 Rh5CG208700 Rh5CG209000 Rh5CG209100 Rh5CG209400 Rh5CG209700 Rh5CG209800 Rh5CG209900 Rh5CG210000 Rh5DG190500 Rh5DG190700 Rh5DG191200 Rh5DG191500
rosa_wichuraiana Rw3G022160 Rw5G017410 Rw5G017420 Rw5G017450 Rw5G017460 Rw5G017470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 371
AatII GACGTC 1 cut(s) 353
AccB7I CCANNNNNTGG 2 cut(s) 81, 739
AccI GTMKAC 1 cut(s) 550
AciI CCGC 5 cut(s) 203, 217, 434, 577, 613
AclI AACGTT 1 cut(s) 117
AcsI RAATTY 1 cut(s) 958
AcyI GRCGYC 1 cut(s) 350
AfaI GTAC 3 cut(s) 209, 827, 955
AfiI CCNNNNNNNGG 3 cut(s) 81, 466, 739
AflIII ACRYGT 1 cut(s) 553
AgsI TTSAA 7 cut(s) 422, 499, 533, 565, 802, 916, 951
AjiI CACGTC 1 cut(s) 554
AjnI CCWGG 2 cut(s) 41, 790
AluBI AGCT 6 cut(s) 191, 413, 503, 568, 701, 779
AluI AGCT 6 cut(s) 191, 413, 503, 568, 701, 779
Alw21I GWGCWC 1 cut(s) 694
Alw26I GTCTC 1 cut(s) 928
AoxI GGCC 4 cut(s) 214, 251, 283, 574
ApeKI GCWGC 6 cut(s) 101, 302, 413, 503, 773, 776
ApoI RAATTY 1 cut(s) 958
AspS9I GGNCC 1 cut(s) 574
AsuHPI GGTGA 1 cut(s) 775
AsuNHI GCTAGC 1 cut(s) 697
Bbv12I GWGCWC 1 cut(s) 694
BbvI GCAGC 6 cut(s) 113, 314, 400, 490, 785, 788
BccI CCATC 4 cut(s) 28, 75, 223, 741
BciT130I CCWGG 2 cut(s) 43, 792
BcoDI GTCTC 1 cut(s) 928
BfaI CTAG 5 cut(s) 410, 462, 698, 737, 938
BisI GCNGC 9 cut(s) 102, 204, 217, 303, 414, 504, 577, 774, 777
BlsI GCNGC 9 cut(s) 103, 205, 218, 304, 415, 505, 578, 775, 778
Bme1390I CCNGG 2 cut(s) 43, 792
BmgBI CACGTC 1 cut(s) 554
BmgT120I GGNCC 1 cut(s) 574
BmiI GGNNCC 1 cut(s) 47
BmrFI CCNGG 2 cut(s) 43, 792
BmsI GCATC 6 cut(s) 30, 61, 129, 415, 738, 876
BmtI GCTAGC 1 cut(s) 701
BoxI GACNNNNGTC 1 cut(s) 245
BpmI CTGGAG 1 cut(s) 813
BpuEI CTTGAG 1 cut(s) 228
BsaHI GRCGYC 1 cut(s) 350
BsaXI ACNNNNNCTCC 2 cut(s) 854, 884
Bsc4I CCNNNNNNNGG 3 cut(s) 81, 466, 739
Bse1I ACTGG 2 cut(s) 540, 636
BseBI CCWGG 2 cut(s) 43, 792
BseGI GGATG 2 cut(s) 86, 715
BseLI CCNNNNNNNGG 3 cut(s) 81, 466, 739
BseNI ACTGG 2 cut(s) 540, 636
BseXI GCAGC 6 cut(s) 113, 314, 400, 490, 785, 788
BsgI GTGCAG 1 cut(s) 281
BshFI GGCC 4 cut(s) 216, 253, 285, 576
BsiHKAI GWGCWC 1 cut(s) 694
BsiSI CCGG 2 cut(s) 220, 250
BsiWI CGTACG 1 cut(s) 207
BslFI GGGAC 1 cut(s) 536
BslI CCNNNNNNNGG 3 cut(s) 81, 466, 739
BsmAI GTCTC 1 cut(s) 928
BsmFI GGGAC 1 cut(s) 536
BsmI GAATGC 1 cut(s) 819
BsnI GGCC 4 cut(s) 216, 253, 285, 576
Bsp1286I GDGCHC 1 cut(s) 694
Bsp1407I TGTACA 1 cut(s) 825
Bsp143I GATC 1 cut(s) 594
BspACI CCGC 5 cut(s) 203, 217, 434, 577, 613
BspANI GGCC 4 cut(s) 216, 253, 285, 576
BspLI GGNNCC 1 cut(s) 47
BspOI GCTAGC 1 cut(s) 701
BspQI GCTCTTC 1 cut(s) 198
BsrGI TGTACA 1 cut(s) 825
BsrI ACTGG 2 cut(s) 540, 636
BssMI GATC 1 cut(s) 594
BssNI GRCGYC 1 cut(s) 350
Bst2UI CCWGG 2 cut(s) 43, 792
Bst4CI ACNGT 4 cut(s) 292, 331, 763, 922
Bst6I CTCTTC 2 cut(s) 198, 680
BstACI GRCGYC 1 cut(s) 350
BstAUI TGTACA 1 cut(s) 825
BstC8I GCNNGC 3 cut(s) 214, 300, 699
BstDEI CTNAG 1 cut(s) 354
BstF5I GGATG 2 cut(s) 86, 715
BstKTI GATC 1 cut(s) 597
BstMAI GTCTC 1 cut(s) 928
BstMBI GATC 1 cut(s) 594
BstMWI GCNNNNNNNGC 2 cut(s) 209, 698
BstNI CCWGG 2 cut(s) 43, 792
BstPAI GACNNNNGTC 1 cut(s) 245
BstSCI CCNGG 2 cut(s) 41, 790
BstV1I GCAGC 6 cut(s) 113, 314, 400, 490, 785, 788
BsuRI GGCC 4 cut(s) 216, 253, 285, 576
BtgZI GCGATG 1 cut(s) 761
BtrI CACGTC 1 cut(s) 554
BtsCI GGATG 2 cut(s) 86, 715
BtsI GCAGTG 1 cut(s) 692
BtsIMutI CAGTG 1 cut(s) 692
Cac8I GCNNGC 3 cut(s) 214, 300, 699
Cfr13I GGNCC 1 cut(s) 574
Csp6I GTAC 3 cut(s) 208, 826, 954
CspCI CAANNNNNGTGG 2 cut(s) 873, 908
CviAII CATG 1 cut(s) 197
CviQI GTAC 3 cut(s) 208, 826, 954
DdeI CTNAG 1 cut(s) 354
DpnI GATC 1 cut(s) 596
DpnII GATC 1 cut(s) 594
Eam1104I CTCTTC 2 cut(s) 198, 680
EarI CTCTTC 2 cut(s) 198, 680
EciI GGCGGA 1 cut(s) 602
EcoRII CCWGG 2 cut(s) 41, 790
FaeI CATG 1 cut(s) 200
FaiI YATR 8 cut(s) 10, 99, 198, 371, 440, 449, 626, 911
FaqI GGGAC 1 cut(s) 536
FatI CATG 1 cut(s) 196
FblI GTMKAC 1 cut(s) 550
Fnu4HI GCNGC 9 cut(s) 102, 204, 217, 303, 414, 504, 577, 774, 777
FokI GGATG 2 cut(s) 93, 722
Fsp4HI GCNGC 9 cut(s) 102, 204, 217, 303, 414, 504, 577, 774, 777
FspBI CTAG 5 cut(s) 410, 462, 698, 737, 938
GluI GCNGC 9 cut(s) 102, 204, 217, 303, 414, 504, 577, 774, 777
GsuI CTGGAG 1 cut(s) 813
HaeIII GGCC 4 cut(s) 216, 253, 285, 576
HapII CCGG 2 cut(s) 220, 250
Hin1I GRCGYC 1 cut(s) 350
Hin1II CATG 1 cut(s) 200
HindIII AAGCTT 1 cut(s) 566
HinfI GANTC 5 cut(s) 85, 241, 635, 713, 798
HpaII CCGG 2 cut(s) 220, 250
HphI GGTGA 1 cut(s) 775
Hpy166II GTNNAC 1 cut(s) 551
Hpy188I TCNGA 1 cut(s) 335
Hpy188III TCNNGA 3 cut(s) 25, 180, 927
Hpy8I GTNNAC 1 cut(s) 551
Hpy99I CGWCG 1 cut(s) 392
HpyAV CCTTC 3 cut(s) 553, 883, 957
HpyCH4III ACNGT 4 cut(s) 292, 331, 763, 922
HpyCH4IV ACGT 5 cut(s) 117, 350, 424, 553, 767
HpyCH4V TGCA 9 cut(s) 101, 142, 298, 362, 406, 680, 758, 773, 964
HpyF10VI GCNNNNNNNGC 2 cut(s) 209, 698
HpyF3I CTNAG 1 cut(s) 354
HpySE526I ACGT 5 cut(s) 117, 350, 424, 553, 767
Hsp92I GRCGYC 1 cut(s) 350
Hsp92II CATG 1 cut(s) 200
Kzo9I GATC 1 cut(s) 594
LguI GCTCTTC 1 cut(s) 198
Lsp1109I GCAGC 6 cut(s) 113, 314, 400, 490, 785, 788
LweI GCATC 6 cut(s) 30, 61, 129, 415, 738, 876
MaeI CTAG 5 cut(s) 410, 462, 698, 737, 938
MaeII ACGT 5 cut(s) 117, 350, 424, 553, 767
MaeIII GTNAC 2 cut(s) 325, 763
MalI GATC 1 cut(s) 596
MboI GATC 1 cut(s) 594
MboII GAAGA 4 cut(s) 40, 185, 589, 697
MhlI GDGCHC 1 cut(s) 694
MluCI AATT 4 cut(s) 13, 266, 885, 958
MlyI GAGTC 2 cut(s) 79, 235
MmeI TCCRAC 1 cut(s) 625
MnlI CCTC 3 cut(s) 339, 626, 788
MseI TTAA 1 cut(s) 900
MspI CCGG 2 cut(s) 220, 250
MspR9I CCNGG 2 cut(s) 43, 792
Mva1269I GAATGC 1 cut(s) 819
MvaI CCWGG 2 cut(s) 43, 792
MwoI GCNNNNNNNGC 2 cut(s) 209, 698
NdeII GATC 1 cut(s) 594
NheI GCTAGC 1 cut(s) 697
NlaIII CATG 1 cut(s) 200
NlaIV GGNNCC 1 cut(s) 47
NmuCI GTSAC 1 cut(s) 763
PciSI GCTCTTC 1 cut(s) 198
PcsI WCGNNNNNNNCGW 1 cut(s) 816
PctI GAATGC 1 cut(s) 819
PfeI GAWTC 3 cut(s) 635, 713, 798
Pfl23II CGTACG 1 cut(s) 207
PflMI CCANNNNNTGG 2 cut(s) 81, 739
PfoI TCCNGGA 1 cut(s) 41
PkrI GCNGC 9 cut(s) 103, 205, 218, 304, 415, 505, 578, 775, 778
PleI GAGTC 2 cut(s) 79, 235
PpsI GAGTC 2 cut(s) 79, 235
PshAI GACNNNNGTC 1 cut(s) 245
PsiI TTATAA 1 cut(s) 371
Psp1406I AACGTT 1 cut(s) 117
Psp6I CCWGG 2 cut(s) 41, 790
PspGI CCWGG 2 cut(s) 41, 790
PspLI CGTACG 1 cut(s) 207
PspN4I GGNNCC 1 cut(s) 47
PspPI GGNCC 1 cut(s) 574
RsaI GTAC 3 cut(s) 209, 827, 955
RsaNI GTAC 3 cut(s) 208, 826, 954
SapI GCTCTTC 1 cut(s) 198
SaqAI TTAA 1 cut(s) 900
SatI GCNGC 9 cut(s) 102, 204, 217, 303, 414, 504, 577, 774, 777
Sau3AI GATC 1 cut(s) 594
Sau96I GGNCC 1 cut(s) 574
SchI GAGTC 2 cut(s) 79, 235
ScrFI CCNGG 2 cut(s) 43, 792
SduI GDGCHC 1 cut(s) 694
SfaNI GCATC 6 cut(s) 30, 61, 129, 415, 738, 876
SmlI CTYRAG 1 cut(s) 243
SmoI CTYRAG 1 cut(s) 243
Sse9I AATT 4 cut(s) 13, 266, 885, 958
SsiI CCGC 5 cut(s) 203, 217, 434, 577, 613
SspI AATATT 1 cut(s) 529
SspMI CTAG 5 cut(s) 410, 462, 698, 737, 938
StyD4I CCNGG 2 cut(s) 41, 790
TaaI ACNGT 4 cut(s) 292, 331, 763, 922
TaiI ACGT 5 cut(s) 120, 353, 427, 556, 770
TaqI TCGA 4 cut(s) 130, 618, 716, 861
TasI AATT 4 cut(s) 13, 266, 885, 958
TatI WGTACW 2 cut(s) 825, 953
TauI GCSGC 3 cut(s) 206, 219, 579
TfiI GAWTC 3 cut(s) 635, 713, 798
Tru1I TTAA 1 cut(s) 900
Tru9I TTAA 1 cut(s) 900
TscAI CASTG 1 cut(s) 699
TseFI GTSAC 1 cut(s) 763
TseI GCWGC 6 cut(s) 101, 302, 413, 503, 773, 776
Tsp45I GTSAC 1 cut(s) 763
TspDTI ATGAA 4 cut(s) 185, 390, 641, 726
TspGWI ACGGA 3 cut(s) 93, 405, 825
TspRI CASTG 1 cut(s) 699
Van91I CCANNNNNTGG 2 cut(s) 81, 739
XapI RAATTY 1 cut(s) 958
XmiI GTMKAC 1 cut(s) 550
XspI CTAG 5 cut(s) 410, 462, 698, 737, 938
ZraI GACGTC 1 cut(s) 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.