Rh2AG210900

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000319
Physical Location & Seq
Forward (+)
21468159 .. 21468623
465 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG210900.1

Sequence Viewer

Length: 465 bp
ATGGATCCTTCGCTGTATGAGGCAGCAGCATCAGGTGATCTTCGTTTTCTCAAAGAAGTTGGAGATGGAGATAGATCAGTTGATATTCTCTTTCAGAAGACCACTAAAAATAACAATGTTCTTCACATAGCTGCTCAGTTCAAGCAAACACAGTTCAAGCAAACACAATTCTTCAAGGAATTCCCAAATCAGATTCAATCTCCATTGTTTTGGGCCACCAATACCAAGGGTGACACTCCCATGCACATTGCTGCTAGGGTAGGTTGTGTTGAACTAGTTGAGTTCCTCATCGATCACGCGAAAAAGTTACGGACTGATGCAGCAGATGAGGAGACCGGACCAGCCGATGCTGAAGCTTATAAAGAGTTGCTTCGAATGACTAATTCGGAAAAAGATACAGCTTTGCATGTTGCTGTTAAAAGCGGGTACCATATATGGTGTTGTCATTCTGTTAATGGATGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_4 Ank_5 PGG

Protein Analysis

154

Amino Acids

17.26

Weight (kDa)

5.84

Isoelectric Point (pI)

28.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 6 - 102 2.6e-08 Ankyrin repeats (3 copies)
Ank_2 PF12796 74 - 143 1.6e-07 Ankyrin repeats (3 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000319)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18590 FvH4_1g18590 FvH4_3g16140 FvH4_3g16141 FvH4_3g16160
malus_domestica MD02G1193600.v1.1 MD04G1020900.v1.1 MD04G1021000.v1.1 MD05G1212100.v1.1 MD05G1212300.v1.1 MD05G1213100.v1.1 MD05G1213400.v1.1 MD10G1197300.v1.1
prunus_persica Prupe.4G144500_v2.0.a1 Prupe.4G144600_v2.0.a1 Prupe.4G144800_v2.0.a1 Prupe.4G144900_v2.0.a1 Prupe.4G145100_v2.0.a1 Prupe.4G145300_v2.0.a1
pyrus_communis pycom02g15730 pycom02g15740 pycom05g19670 pycom05g19680 pycom10g17020 pycom11g27250
rosa_chinensis RchiOBHm_Chr2g0109301 RchiOBHm_Chr2g0109321 RchiOBHm_Chr2g0109341 RchiOBHm_Chr2g0109381 RchiOBHm_Chr3g0482301 RchiOBHm_Chr5g0027111 RchiOBHm_Chr5g0027121 RchiOBHm_Chr5g0027141 RchiOBHm_Chr5g0027181 RchiOBHm_Chr5g0027241
rosa_laevigata RLG00000017731 RLG00000017732 RLG00000032990 RLG00000032992 RLG00000032993 RLG00000032995 RLG00000032997 RLG00000033002
rosa_multiflora Rmu_sc0000135.1_g000002 Rmu_sc0000332.1_g000010 Rmu_sc0000882.1_g000028 Rmu_sc0000882.1_g000032 Rmu_sc0000882.1_g000033 Rmu_sc0000882.1_g000039 Rmu_sc0000882.1_g000043 Rmu_sc0000882.1_g000046 Rmu_sc0006065.1_g000003 Rmu_sc0006065.1_g000012 Rmu_sc0006065.1_g000018 Rmu_sc0006065.1_g000019 Rmu_sc0006065.1_g000022 Rmu_sc0007497.1_g000002 Rmu_sc0013610.1_g000011 Rmu_sc0015338.1_g000006 Rmu_ssc0000357.1_g000035
rosa_roxburghii Rroxscaffold_1G00052250 Rroxscaffold_1G00052280 Rroxscaffold_1G00052290 Rroxscaffold_1G00052310 Rroxscaffold_1G00052330 Rroxscaffold_1G00052360 Rroxscaffold_1G00052380 Rroxscaffold_1G00052390 Rroxscaffold_2G00134310 Rroxscaffold_2G00134330
rosa_rugosa Rorug02G0159400 Rorug05G0097300 Rorug05G0097500 Rorug05G0097600 Rorug05G0097700 Rorug05G0097700 Rorug05G0097700 Rorug05G0122900
rosa_samantha Rh2AG210900 Rh2AG211200 Rh2AG211500 Rh2BG221200 Rh2BG221800 Rh2CG213100 Rh2CG213200 Rh2CG213600 Rh3CG277900 Rh3CG278000 Rh3CG278600 Rh3DG274600 Rh5BG188600 Rh5BG188700 Rh5BG188900 Rh5BG189100 Rh5BG189200 Rh5BG189400 Rh5CG208400 Rh5CG208500 Rh5CG208700 Rh5CG209000 Rh5CG209100 Rh5CG209400 Rh5CG209700 Rh5CG209800 Rh5CG209900 Rh5CG210000 Rh5DG190500 Rh5DG190700 Rh5DG191200 Rh5DG191500
rosa_wichuraiana Rw3G022160 Rw5G017410 Rw5G017420 Rw5G017450 Rw5G017460 Rw5G017470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 360
Acc65I GGTACC 1 cut(s) 426
AccB1I GGYRCC 1 cut(s) 426
AccII CGCG 1 cut(s) 299
AciI CCGC 1 cut(s) 423
AclWI GGATC 1 cut(s) 12
AcsI RAATTY 1 cut(s) 179
AcuI CTGAAG 1 cut(s) 372
AfaI GTAC 1 cut(s) 428
AgsI TTSAA 5 cut(s) 142, 157, 175, 197, 272
AhlI ACTAGT 1 cut(s) 274
AluBI AGCT 3 cut(s) 131, 356, 401
AluI AGCT 3 cut(s) 131, 356, 401
Alw26I GTCTC 1 cut(s) 326
AlwI GGATC 1 cut(s) 12
AoxI GGCC 1 cut(s) 213
ApeKI GCWGC 5 cut(s) 23, 26, 131, 251, 320
ApoI RAATTY 1 cut(s) 179
Asp718I GGTACC 1 cut(s) 426
AspS9I GGNCC 2 cut(s) 213, 338
AsuHPI GGTGA 2 cut(s) 47, 242
AsuII TTCGAA 1 cut(s) 373
AvaII GGWCC 1 cut(s) 338
BamHI GGATCC 1 cut(s) 4
BanI GGYRCC 1 cut(s) 426
BbsI GAAGAC 1 cut(s) 104
BbvI GCAGC 5 cut(s) 35, 38, 118, 238, 332
BccI CCATC 1 cut(s) 59
BcoDI GTCTC 1 cut(s) 326
BcuI ACTAGT 1 cut(s) 274
BfaI CTAG 2 cut(s) 255, 275
BisI GCNGC 5 cut(s) 24, 27, 132, 252, 321
BlsI GCNGC 5 cut(s) 25, 28, 133, 253, 322
Bme18I GGWCC 1 cut(s) 338
BmgT120I GGNCC 2 cut(s) 213, 338
BmiI GGNNCC 2 cut(s) 6, 428
BmsI GCATC 4 cut(s) 38, 307, 337, 449
BpiI GAAGAC 1 cut(s) 104
Bpu14I TTCGAA 1 cut(s) 373
Bsa29I ATCGAT 1 cut(s) 291
BsaI GGTCTC 1 cut(s) 326
BsaJI CCNNGG 1 cut(s) 225
BsaWI WCCGGW 1 cut(s) 335
Bse3DI GCAATG 1 cut(s) 246
BseCI ATCGAT 1 cut(s) 291
BseDI CCNNGG 1 cut(s) 225
BseGI GGATG 1 cut(s) 464
BseMI GCAATG 1 cut(s) 246
BseMII CTCAG 1 cut(s) 149
BseRI GAGGAG 1 cut(s) 344
BseXI GCAGC 5 cut(s) 35, 38, 118, 238, 332
Bsh1236I CGCG 1 cut(s) 299
BshFI GGCC 1 cut(s) 215
BshNI GGYRCC 1 cut(s) 426
BshVI ATCGAT 1 cut(s) 291
BsiSI CCGG 1 cut(s) 336
BsmAI GTCTC 1 cut(s) 326
BsnI GGCC 1 cut(s) 215
Bso31I GGTCTC 1 cut(s) 326
Bsp119I TTCGAA 1 cut(s) 373
Bsp143I GATC 4 cut(s) 4, 37, 74, 292
BspACI CCGC 1 cut(s) 423
BspANI GGCC 1 cut(s) 215
BspCNI CTCAG 1 cut(s) 148
BspDI ATCGAT 1 cut(s) 291
BspFNI CGCG 1 cut(s) 299
BspLI GGNNCC 2 cut(s) 6, 428
BspPI GGATC 1 cut(s) 12
BspT104I TTCGAA 1 cut(s) 373
BspT107I GGYRCC 1 cut(s) 426
BspTNI GGTCTC 1 cut(s) 326
BsrDI GCAATG 1 cut(s) 246
BssECI CCNNGG 1 cut(s) 225
BssMI GATC 4 cut(s) 4, 37, 74, 292
BssT1I CCWWGG 1 cut(s) 225
Bst4CI ACNGT 1 cut(s) 153
BstBI TTCGAA 1 cut(s) 373
BstDEI CTNAG 1 cut(s) 135
BstF5I GGATG 1 cut(s) 464
BstFNI CGCG 1 cut(s) 299
BstKTI GATC 4 cut(s) 7, 40, 77, 295
BstMAI GTCTC 1 cut(s) 326
BstMBI GATC 4 cut(s) 4, 37, 74, 292
BstNSI RCATGY 1 cut(s) 410
BstUI CGCG 1 cut(s) 299
BstV1I GCAGC 5 cut(s) 35, 38, 118, 238, 332
BstV2I GAAGAC 1 cut(s) 104
BstX2I RGATCY 1 cut(s) 4
BstXI CCANNNNNNTGG 1 cut(s) 210
BstYI RGATCY 1 cut(s) 4
Bsu15I ATCGAT 1 cut(s) 291
BsuRI GGCC 1 cut(s) 215
BsuTUI ATCGAT 1 cut(s) 291
BtsCI GGATG 1 cut(s) 464
Cfr13I GGNCC 2 cut(s) 213, 338
ClaI ATCGAT 1 cut(s) 291
Csp6I GTAC 1 cut(s) 427
CviAII CATG 2 cut(s) 241, 407
CviJI RGCY 5 cut(s) 131, 215, 344, 356, 401
CviKI_1 RGCY 5 cut(s) 131, 215, 344, 356, 401
CviQI GTAC 1 cut(s) 427
DdeI CTNAG 1 cut(s) 135
DpnI GATC 4 cut(s) 6, 39, 76, 294
DpnII GATC 4 cut(s) 4, 37, 74, 292
Eco130I CCWWGG 1 cut(s) 225
Eco31I GGTCTC 1 cut(s) 326
Eco47I GGWCC 1 cut(s) 338
Eco57I CTGAAG 1 cut(s) 372
EcoRI GAATTC 1 cut(s) 179
EcoT14I CCWWGG 1 cut(s) 225
ErhI CCWWGG 1 cut(s) 225
FaeI CATG 2 cut(s) 244, 410
FaiI YATR 8 cut(s) 18, 128, 242, 360, 408, 432, 434, 436
FalI AAGNNNNNCTT 2 cut(s) 354, 386
FatI CATG 2 cut(s) 240, 406
FauI CCCGC 1 cut(s) 416
Fnu4HI GCNGC 5 cut(s) 24, 27, 132, 252, 321
Fsp4HI GCNGC 5 cut(s) 24, 27, 132, 252, 321
FspBI CTAG 2 cut(s) 255, 275
GluI GCNGC 5 cut(s) 24, 27, 132, 252, 321
HaeIII GGCC 1 cut(s) 215
HapII CCGG 1 cut(s) 336
Hin1II CATG 2 cut(s) 244, 410
HindIII AAGCTT 1 cut(s) 354
HinfI GANTC 1 cut(s) 193
HpaII CCGG 1 cut(s) 336
HphI GGTGA 2 cut(s) 47, 242
Hpy188I TCNGA 3 cut(s) 96, 192, 388
HpyAV CCTTC 1 cut(s) 18
HpyCH4III ACNGT 1 cut(s) 153
HpyCH4V TGCA 3 cut(s) 244, 320, 406
HpyF3I CTNAG 1 cut(s) 135
Hsp92II CATG 2 cut(s) 244, 410
KpnI GGTACC 1 cut(s) 430
Kzo9I GATC 4 cut(s) 4, 37, 74, 292
LpnPI CCDG 3 cut(s) 18, 349, 354
Lsp1109I GCAGC 5 cut(s) 35, 38, 118, 238, 332
LweI GCATC 4 cut(s) 38, 307, 337, 449
MaeI CTAG 2 cut(s) 255, 275
MaeIII GTNAC 2 cut(s) 230, 306
MalI GATC 4 cut(s) 6, 39, 76, 294
MboI GATC 4 cut(s) 4, 37, 74, 292
MboII GAAGA 4 cut(s) 32, 109, 113, 163
MflI RGATCY 1 cut(s) 4
MluCI AATT 3 cut(s) 167, 179, 382
MmeI TCCRAC 1 cut(s) 40
MnlI CCTC 3 cut(s) 13, 296, 322
MseI TTAA 2 cut(s) 417, 453
MslI CAYNNNNRTG 1 cut(s) 239
MspI CCGG 1 cut(s) 336
MvnI CGCG 1 cut(s) 299
NdeII GATC 4 cut(s) 4, 37, 74, 292
NlaIII CATG 2 cut(s) 244, 410
NlaIV GGNNCC 2 cut(s) 6, 428
NmuCI GTSAC 1 cut(s) 230
NspI RCATGY 1 cut(s) 410
NspV TTCGAA 1 cut(s) 373
PfeI GAWTC 1 cut(s) 193
PkrI GCNGC 5 cut(s) 25, 28, 133, 253, 322
PsiI TTATAA 1 cut(s) 360
PspN4I GGNNCC 2 cut(s) 6, 428
PspPI GGNCC 2 cut(s) 213, 338
PsuI RGATCY 1 cut(s) 4
RsaI GTAC 1 cut(s) 428
RsaNI GTAC 1 cut(s) 427
RseI CAYNNNNRTG 1 cut(s) 239
SaqAI TTAA 2 cut(s) 417, 453
SatI GCNGC 5 cut(s) 24, 27, 132, 252, 321
Sau3AI GATC 4 cut(s) 4, 37, 74, 292
Sau96I GGNCC 2 cut(s) 213, 338
SetI ASST 5 cut(s) 37, 133, 265, 358, 403
SfaNI GCATC 4 cut(s) 38, 307, 337, 449
SfuI TTCGAA 1 cut(s) 373
SinI GGWCC 1 cut(s) 338
SmiMI CAYNNNNRTG 1 cut(s) 239
SpeI ACTAGT 1 cut(s) 274
Sse9I AATT 3 cut(s) 167, 179, 382
SsiI CCGC 1 cut(s) 423
SspMI CTAG 2 cut(s) 255, 275
StyI CCWWGG 1 cut(s) 225
TaaI ACNGT 1 cut(s) 153
TaqI TCGA 2 cut(s) 291, 373
TasI AATT 3 cut(s) 167, 179, 382
TfiI GAWTC 1 cut(s) 193
Tru1I TTAA 2 cut(s) 417, 453
Tru9I TTAA 2 cut(s) 417, 453
TseFI GTSAC 1 cut(s) 230
TseI GCWGC 5 cut(s) 23, 26, 131, 251, 320
Tsp45I GTSAC 1 cut(s) 230
TspGWI ACGGA 1 cut(s) 325
VpaK11BI GGWCC 1 cut(s) 338
XapI RAATTY 1 cut(s) 179
XceI RCATGY 1 cut(s) 410
XspI CTAG 2 cut(s) 255, 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.