Rmu_sc0006065.1_g000019

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006065.1
OG0000319
Physical Location & Seq
Reverse (-)
100154 .. 101597
1444 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006065.1_g000019.1.cds

Sequence Viewer

Length: 747 bp
atggatccttctatgtataaggcggcaacttgtggtgatgttggtttcttgcaaagaattagagatggtgatgtatcaactgatcttctcagtcaaaaaaccccaaagggcaacaacattcttcaccttgcaactgaattcaagcagatcaatttcttcaaaggcgtcccttcctttgagaaaggctctccgctgctttggaacatcaacaagatgggtgatacccccttgcacattgctgcaagagtaggatgtgttgaattggtggacttccttattgatcatgcaaaaatgctacatgttcagagagttggcgatcaggaaaggggaacaacatatgctgaatcttataaaaagttactgcggaagaccaacttggaaaagcatacggcattgcatgttgctgcccgatatggccatcgtcaagtggtgattttgttgataaaagcggatcctgaattgtgttgttctactaatagcaaaaaggagtcgccattgttcttggcgatctgcaagggtttttctaacattgctggtgacattttggaggagccttcaataagaccttctttccaaggaatcaatggtgttacagccttacatgcagccgatgggtggttggcacgaacagttcagcaacaccatgatccgtccagcaacacccgccactcgtcgatctggccggaacccacaatgaacacgaacggttccggttggacagattcggttcgttcgtgtaaattgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 Ank_5 PGG

Protein Analysis

248

Amino Acids

27.49

Weight (kDa)

8.71

Isoelectric Point (pI)

40.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000319)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18590 FvH4_1g18590 FvH4_3g16140 FvH4_3g16141 FvH4_3g16160
malus_domestica MD02G1193600.v1.1 MD04G1020900.v1.1 MD04G1021000.v1.1 MD05G1212100.v1.1 MD05G1212300.v1.1 MD05G1213100.v1.1 MD05G1213400.v1.1 MD10G1197300.v1.1
prunus_persica Prupe.4G144500_v2.0.a1 Prupe.4G144600_v2.0.a1 Prupe.4G144800_v2.0.a1 Prupe.4G144900_v2.0.a1 Prupe.4G145100_v2.0.a1 Prupe.4G145300_v2.0.a1
pyrus_communis pycom02g15730 pycom02g15740 pycom05g19670 pycom05g19680 pycom10g17020 pycom11g27250
rosa_chinensis RchiOBHm_Chr2g0109301 RchiOBHm_Chr2g0109321 RchiOBHm_Chr2g0109341 RchiOBHm_Chr2g0109381 RchiOBHm_Chr3g0482301 RchiOBHm_Chr5g0027111 RchiOBHm_Chr5g0027121 RchiOBHm_Chr5g0027141 RchiOBHm_Chr5g0027181 RchiOBHm_Chr5g0027241
rosa_laevigata RLG00000017731 RLG00000017732 RLG00000032990 RLG00000032992 RLG00000032993 RLG00000032995 RLG00000032997 RLG00000033002
rosa_multiflora Rmu_sc0000135.1_g000002 Rmu_sc0000332.1_g000010 Rmu_sc0000882.1_g000028 Rmu_sc0000882.1_g000032 Rmu_sc0000882.1_g000033 Rmu_sc0000882.1_g000039 Rmu_sc0000882.1_g000043 Rmu_sc0000882.1_g000046 Rmu_sc0006065.1_g000003 Rmu_sc0006065.1_g000012 Rmu_sc0006065.1_g000018 Rmu_sc0006065.1_g000019 Rmu_sc0006065.1_g000022 Rmu_sc0007497.1_g000002 Rmu_sc0013610.1_g000011 Rmu_sc0015338.1_g000006 Rmu_ssc0000357.1_g000035
rosa_roxburghii Rroxscaffold_1G00052250 Rroxscaffold_1G00052280 Rroxscaffold_1G00052290 Rroxscaffold_1G00052310 Rroxscaffold_1G00052330 Rroxscaffold_1G00052360 Rroxscaffold_1G00052380 Rroxscaffold_1G00052390 Rroxscaffold_2G00134310 Rroxscaffold_2G00134330
rosa_rugosa Rorug02G0159400 Rorug05G0097300 Rorug05G0097500 Rorug05G0097600 Rorug05G0097700 Rorug05G0097700 Rorug05G0097700 Rorug05G0122900
rosa_samantha Rh2AG210900 Rh2AG211200 Rh2AG211500 Rh2BG221200 Rh2BG221800 Rh2CG213100 Rh2CG213200 Rh2CG213600 Rh3CG277900 Rh3CG278000 Rh3CG278600 Rh3DG274600 Rh5BG188600 Rh5BG188700 Rh5BG188900 Rh5BG189100 Rh5BG189200 Rh5BG189400 Rh5CG208400 Rh5CG208500 Rh5CG208700 Rh5CG209000 Rh5CG209100 Rh5CG209400 Rh5CG209700 Rh5CG209800 Rh5CG209900 Rh5CG210000 Rh5DG190500 Rh5DG190700 Rh5DG191200 Rh5DG191500
rosa_wichuraiana Rw3G022160 Rw5G017410 Rw5G017420 Rw5G017450 Rw5G017460 Rw5G017470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 351
AciI CCGC 5 cut(s) 23, 191, 364, 449, 664
AclWI GGATC 4 cut(s) 12, 446, 459, 641
AcoI YGGCCR 2 cut(s) 415, 680
AcsI RAATTY 1 cut(s) 137
AcyI GRCGYC 1 cut(s) 165
AfiI CCNNNNNNNGG 1 cut(s) 615
AflIII ACRYGT 1 cut(s) 298
AgsI TTSAA 4 cut(s) 142, 160, 260, 558
AjuI GAANNNNNNNTTGG 2 cut(s) 359, 391
AlwI GGATC 4 cut(s) 12, 446, 459, 641
AoxI GGCC 2 cut(s) 415, 680
ApeKI GCWGC 4 cut(s) 193, 239, 404, 605
ApoI RAATTY 1 cut(s) 137
AsuHPI GGTGA 6 cut(s) 47, 80, 116, 230, 442, 548
BalI TGGCCA 1 cut(s) 417
BamHI GGATCC 2 cut(s) 4, 451
BbsI GAAGAC 1 cut(s) 374
BbvI GCAGC 4 cut(s) 180, 226, 391, 617
BccI CCATC 4 cut(s) 59, 208, 426, 605
BceAI ACGGC 1 cut(s) 405
BclI TGATCA 1 cut(s) 280
BisI GCNGC 5 cut(s) 24, 194, 240, 405, 606
BlsI GCNGC 5 cut(s) 25, 195, 241, 406, 607
BmiI GGNNCC 5 cut(s) 6, 453, 552, 687, 709
BpiI GAAGAC 1 cut(s) 374
BplI GAGNNNNNCTC 2 cut(s) 170, 202
BsaHI GRCGYC 1 cut(s) 165
BsaJI CCNNGG 1 cut(s) 574
BsaWI WCCGGW 1 cut(s) 710
Bsc4I CCNNNNNNNGG 1 cut(s) 615
Bse3DI GCAATG 3 cut(s) 234, 392, 528
BseDI CCNNGG 1 cut(s) 574
BseGI GGATG 1 cut(s) 257
BseLI CCNNNNNNNGG 1 cut(s) 615
BseMI GCAATG 3 cut(s) 234, 392, 528
BseMII CTCAG 1 cut(s) 103
BseRI GAGGAG 1 cut(s) 563
BseXI GCAGC 4 cut(s) 180, 226, 391, 617
BshFI GGCC 2 cut(s) 417, 682
BsiSI CCGG 2 cut(s) 683, 711
BslFI GGGAC 1 cut(s) 152
BslI CCNNNNNNNGG 1 cut(s) 615
BsmFI GGGAC 1 cut(s) 152
BsnI GGCC 2 cut(s) 417, 682
Bsp143I GATC 9 cut(s) 4, 82, 147, 280, 316, 451, 507, 646, 675
BspACI CCGC 5 cut(s) 23, 191, 364, 449, 664
BspANI GGCC 2 cut(s) 417, 682
BspCNI CTCAG 1 cut(s) 102
BspLI GGNNCC 5 cut(s) 6, 453, 552, 687, 709
BspPI GGATC 4 cut(s) 12, 446, 459, 641
BsrDI GCAATG 3 cut(s) 234, 392, 528
BssECI CCNNGG 1 cut(s) 574
BssMI GATC 9 cut(s) 4, 82, 147, 280, 316, 451, 507, 646, 675
BssNI GRCGYC 1 cut(s) 165
BssT1I CCWWGG 1 cut(s) 574
Bst4CI ACNGT 2 cut(s) 631, 707
BstACI GRCGYC 1 cut(s) 165
BstDEI CTNAG 1 cut(s) 89
BstF5I GGATG 1 cut(s) 257
BstKTI GATC 9 cut(s) 7, 85, 150, 283, 319, 454, 510, 649, 678
BstMBI GATC 9 cut(s) 4, 82, 147, 280, 316, 451, 507, 646, 675
BstMWI GCNNNNNNNGC 2 cut(s) 602, 663
BstNSI RCATGY 3 cut(s) 302, 401, 605
BstV1I GCAGC 4 cut(s) 180, 226, 391, 617
BstV2I GAAGAC 1 cut(s) 374
BstX2I RGATCY 2 cut(s) 4, 451
BstYI RGATCY 2 cut(s) 4, 451
BsuRI GGCC 2 cut(s) 417, 682
BtsCI GGATG 1 cut(s) 257
CseI GACGC 1 cut(s) 154
CviAII CATG 5 cut(s) 284, 299, 398, 602, 644
CviJI RGCY 6 cut(s) 186, 417, 553, 596, 608, 682
CviKI_1 RGCY 6 cut(s) 186, 417, 553, 596, 608, 682
DdeI CTNAG 1 cut(s) 89
DpnI GATC 9 cut(s) 6, 84, 149, 282, 318, 453, 509, 648, 677
DpnII GATC 9 cut(s) 4, 82, 147, 280, 316, 451, 507, 646, 675
EaeI YGGCCR 2 cut(s) 415, 680
Eco130I CCWWGG 1 cut(s) 574
EcoRI GAATTC 1 cut(s) 137
EcoT14I CCWWGG 1 cut(s) 574
ErhI CCWWGG 1 cut(s) 574
FaeI CATG 5 cut(s) 287, 302, 401, 605, 647
FalI AAGNNNNNCTT 4 cut(s) 359, 391, 553, 585
FaqI GGGAC 1 cut(s) 152
FatI CATG 5 cut(s) 283, 298, 397, 601, 643
FauI CCCGC 1 cut(s) 671
FauNDI CATATG 1 cut(s) 337
FbaI TGATCA 1 cut(s) 280
Fnu4HI GCNGC 5 cut(s) 24, 194, 240, 405, 606
FokI GGATG 1 cut(s) 264
Fsp4HI GCNGC 5 cut(s) 24, 194, 240, 405, 606
GluI GCNGC 5 cut(s) 24, 194, 240, 405, 606
HaeIII GGCC 2 cut(s) 417, 682
HapII CCGG 2 cut(s) 683, 711
HgaI GACGC 1 cut(s) 154
Hin1I GRCGYC 1 cut(s) 165
Hin1II CATG 5 cut(s) 287, 302, 401, 605, 647
HinfI GANTC 4 cut(s) 344, 488, 579, 722
HpaII CCGG 2 cut(s) 683, 711
HphI GGTGA 6 cut(s) 47, 80, 116, 230, 442, 548
Hpy166II GTNNAC 1 cut(s) 268
Hpy188I TCNGA 1 cut(s) 306
Hpy188III TCNNGA 2 cut(s) 320, 455
Hpy8I GTNNAC 1 cut(s) 268
Hpy99I CGWCG 1 cut(s) 676
HpyAV CCTTC 4 cut(s) 18, 180, 564, 576
HpyCH4III ACNGT 2 cut(s) 631, 707
HpyCH4V TGCA 8 cut(s) 52, 131, 232, 242, 287, 397, 513, 605
HpyF10VI GCNNNNNNNGC 2 cut(s) 602, 663
HpyF3I CTNAG 1 cut(s) 89
Hsp92I GRCGYC 1 cut(s) 165
Hsp92II CATG 5 cut(s) 287, 302, 401, 605, 647
Ksp22I TGATCA 1 cut(s) 280
Kzo9I GATC 9 cut(s) 4, 82, 147, 280, 316, 451, 507, 646, 675
LmnI GCTCC 1 cut(s) 550
LpnPI CCDG 7 cut(s) 305, 468, 519, 664, 667, 696, 724
Lsp1109I GCAGC 4 cut(s) 180, 226, 391, 617
MaeIII GTNAC 3 cut(s) 357, 536, 589
MalI GATC 9 cut(s) 6, 84, 149, 282, 318, 453, 509, 648, 677
MboI GATC 9 cut(s) 4, 82, 147, 280, 316, 451, 507, 646, 675
MboII GAAGA 4 cut(s) 77, 113, 148, 379
MflI RGATCY 2 cut(s) 4, 451
MlsI TGGCCA 1 cut(s) 417
MluCI AATT 6 cut(s) 57, 137, 151, 260, 458, 740
MluNI TGGCCA 1 cut(s) 417
MlyI GAGTC 1 cut(s) 497
MmeI TCCRAC 1 cut(s) 695
MnlI CCTC 1 cut(s) 541
Mox20I TGGCCA 1 cut(s) 417
MscI TGGCCA 1 cut(s) 417
Msp20I TGGCCA 1 cut(s) 417
MspA1I CMGCKG 1 cut(s) 193
MspI CCGG 2 cut(s) 683, 711
MwoI GCNNNNNNNGC 2 cut(s) 602, 663
NdeI CATATG 1 cut(s) 337
NdeII GATC 9 cut(s) 4, 82, 147, 280, 316, 451, 507, 646, 675
NlaIII CATG 5 cut(s) 287, 302, 401, 605, 647
NlaIV GGNNCC 5 cut(s) 6, 453, 552, 687, 709
NmuCI GTSAC 1 cut(s) 536
NspI RCATGY 3 cut(s) 302, 401, 605
PciI ACATGT 1 cut(s) 298
PcsI WCGNNNNNNNCGW 1 cut(s) 731
PfeI GAWTC 3 cut(s) 344, 579, 722
PkrI GCNGC 5 cut(s) 25, 195, 241, 406, 607
PleI GAGTC 1 cut(s) 496
PpsI GAGTC 1 cut(s) 496
PscI ACATGT 1 cut(s) 298
PsiI TTATAA 1 cut(s) 351
PspN4I GGNNCC 5 cut(s) 6, 453, 552, 687, 709
PsuI RGATCY 2 cut(s) 4, 451
SatI GCNGC 5 cut(s) 24, 194, 240, 405, 606
Sau3AI GATC 9 cut(s) 4, 82, 147, 280, 316, 451, 507, 646, 675
SchI GAGTC 1 cut(s) 497
SetI ASST 2 cut(s) 129, 568
Sse9I AATT 6 cut(s) 57, 137, 151, 260, 458, 740
SsiI CCGC 5 cut(s) 23, 191, 364, 449, 664
StyI CCWWGG 1 cut(s) 574
TaaI ACNGT 2 cut(s) 631, 707
TaqI TCGA 1 cut(s) 674
TasI AATT 6 cut(s) 57, 137, 151, 260, 458, 740
TauI GCSGC 1 cut(s) 26
TfiI GAWTC 3 cut(s) 344, 579, 722
TseFI GTSAC 1 cut(s) 536
TseI GCWGC 4 cut(s) 193, 239, 404, 605
Tsp45I GTSAC 1 cut(s) 536
TspDTI ATGAA 1 cut(s) 710
TspGWI ACGGA 1 cut(s) 639
XapI RAATTY 1 cut(s) 137
XceI RCATGY 3 cut(s) 302, 401, 605
XcmI CCANNNNNNNNNTGG 1 cut(s) 581
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.