pycom02g15730

Ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0000319
Physical Location & Seq
Forward (+)
12726878 .. 12727525
648 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g15730.1

Sequence Viewer

Length: 648 bp
ATGCAGTTTGAAGTCATGGATCCTTCTGTATACGAGGCAGCAAGATTGGGTGATCTTGCTTTCCTGAAAAAAATTAGAGACGGTGATCTTTCAATTAATCTTCTTTTGCAGAAAACACCTAGAAATAACAATATTCTTCATCTTGCAGCTGAGTTCAAACAAATCGATTTCTTCAAAAGCATCCCGATTGATAATCAATCTCCACTGTATTGGGATACCAACAACAAAGGTGACACTCCCATGCACGTAGCTGCCAAAGCAGGCTGTGATGAAGTAGTAGGGTTGCTCATTAATCATGCAAGGATGCTATACAATGAAGGAGCAGATGAAGAAAGTATGCTGGCCGATGGCAGAGCGTATAAAGATTTGCTCCGAATCAAAAATTTGATTGAAGATACAGGACTACATGTTGCCATCAAGTACGGTCACCTCAAAGTGGTCATTCTTTTGGTCGAAGCCGATCCTGAGTTGTGTTGTTTTACTAACAGCGCCAACGAATCCCCGTTGTTTTTAGCTACTACCAAGGGCTTTCCGAGGATTGCTCGCTATATGTTAAAAAAGTTCCCAACGTCTTCTTTACAGGGAATTAATGGTGTCACAGCTTTGCATGCAGCAATAACTCACAATATCAGCTGCAAAGGTAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_4 Ank_5 PGG

Protein Analysis

216

Amino Acids

23.9

Weight (kDa)

6.65

Isoelectric Point (pI)

29.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 13 - 99 2.6e-07 Ankyrin repeats (3 copies)
Ank_2 PF12796 46 - 154 2.8e-10 Ankyrin repeats (3 copies)
Ank_2 PF12796 130 - 187 2.3e-06 Ankyrin repeats (3 copies)
Ank_2 PF12796 135 - 209 2.6e-08 Ankyrin repeats (3 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000319)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18590 FvH4_1g18590 FvH4_3g16140 FvH4_3g16141 FvH4_3g16160
malus_domestica MD02G1193600.v1.1 MD04G1020900.v1.1 MD04G1021000.v1.1 MD05G1212100.v1.1 MD05G1212300.v1.1 MD05G1213100.v1.1 MD05G1213400.v1.1 MD10G1197300.v1.1
prunus_persica Prupe.4G144500_v2.0.a1 Prupe.4G144600_v2.0.a1 Prupe.4G144800_v2.0.a1 Prupe.4G144900_v2.0.a1 Prupe.4G145100_v2.0.a1 Prupe.4G145300_v2.0.a1
pyrus_communis pycom02g15730 pycom02g15740 pycom05g19670 pycom05g19680 pycom10g17020 pycom11g27250
rosa_chinensis RchiOBHm_Chr2g0109301 RchiOBHm_Chr2g0109321 RchiOBHm_Chr2g0109341 RchiOBHm_Chr2g0109381 RchiOBHm_Chr3g0482301 RchiOBHm_Chr5g0027111 RchiOBHm_Chr5g0027121 RchiOBHm_Chr5g0027141 RchiOBHm_Chr5g0027181 RchiOBHm_Chr5g0027241
rosa_laevigata RLG00000017731 RLG00000017732 RLG00000032990 RLG00000032992 RLG00000032993 RLG00000032995 RLG00000032997 RLG00000033002
rosa_multiflora Rmu_sc0000135.1_g000002 Rmu_sc0000332.1_g000010 Rmu_sc0000882.1_g000028 Rmu_sc0000882.1_g000032 Rmu_sc0000882.1_g000033 Rmu_sc0000882.1_g000039 Rmu_sc0000882.1_g000043 Rmu_sc0000882.1_g000046 Rmu_sc0006065.1_g000003 Rmu_sc0006065.1_g000012 Rmu_sc0006065.1_g000018 Rmu_sc0006065.1_g000019 Rmu_sc0006065.1_g000022 Rmu_sc0007497.1_g000002 Rmu_sc0013610.1_g000011 Rmu_sc0015338.1_g000006 Rmu_ssc0000357.1_g000035
rosa_roxburghii Rroxscaffold_1G00052250 Rroxscaffold_1G00052280 Rroxscaffold_1G00052290 Rroxscaffold_1G00052310 Rroxscaffold_1G00052330 Rroxscaffold_1G00052360 Rroxscaffold_1G00052380 Rroxscaffold_1G00052390 Rroxscaffold_2G00134310 Rroxscaffold_2G00134330
rosa_rugosa Rorug02G0159400 Rorug05G0097300 Rorug05G0097500 Rorug05G0097600 Rorug05G0097700 Rorug05G0097700 Rorug05G0097700 Rorug05G0122900
rosa_samantha Rh2AG210900 Rh2AG211200 Rh2AG211500 Rh2BG221200 Rh2BG221800 Rh2CG213100 Rh2CG213200 Rh2CG213600 Rh3CG277900 Rh3CG278000 Rh3CG278600 Rh3DG274600 Rh5BG188600 Rh5BG188700 Rh5BG188900 Rh5BG189100 Rh5BG189200 Rh5BG189400 Rh5CG208400 Rh5CG208500 Rh5CG208700 Rh5CG209000 Rh5CG209100 Rh5CG209400 Rh5CG209700 Rh5CG209800 Rh5CG209900 Rh5CG210000 Rh5DG190500 Rh5DG190700 Rh5DG191200 Rh5DG191500
rosa_wichuraiana Rw3G022160 Rw5G017410 Rw5G017420 Rw5G017450 Rw5G017460 Rw5G017470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 30
AclWI GGATC 3 cut(s) 14, 27, 455
AcoI YGGCCR 1 cut(s) 342
AcsI RAATTY 1 cut(s) 382
AfaI GTAC 1 cut(s) 422
AfiI CCNNNNNNNGG 1 cut(s) 436
AflIII ACRYGT 1 cut(s) 406
AgsI TTSAA 5 cut(s) 11, 93, 157, 175, 392
AluBI AGCT 5 cut(s) 149, 251, 515, 602, 633
AluI AGCT 5 cut(s) 149, 251, 515, 602, 633
Alw26I GTCTC 1 cut(s) 72
AlwI GGATC 3 cut(s) 14, 27, 455
AoxI GGCC 1 cut(s) 342
ApeKI GCWGC 5 cut(s) 38, 146, 251, 611, 633
ApoI RAATTY 1 cut(s) 382
AseI ATTAAT 3 cut(s) 96, 291, 588
AspLEI GCGC 1 cut(s) 491
AsuHPI GGTGA 4 cut(s) 62, 95, 242, 419
BamHI GGATCC 1 cut(s) 19
BbsI GAAGAC 1 cut(s) 564
BbvI GCAGC 5 cut(s) 50, 158, 238, 620, 623
BccI CCATC 2 cut(s) 341, 422
BciVI GTATCC 1 cut(s) 208
BcoDI GTCTC 1 cut(s) 72
BfaI CTAG 1 cut(s) 120
BfoI RGCGCY 1 cut(s) 492
BfuI GTATCC 1 cut(s) 208
BisI GCNGC 5 cut(s) 39, 147, 252, 612, 634
BlsI GCNGC 5 cut(s) 40, 148, 253, 613, 635
BmiI GGNNCC 1 cut(s) 21
BmsI GCATC 2 cut(s) 189, 294
BpiI GAAGAC 1 cut(s) 564
BplI GAGNNNNNCTC 2 cut(s) 526, 558
Bsa29I ATCGAT 1 cut(s) 165
BsaAI YACGTR 1 cut(s) 247
BsaJI CCNNGG 2 cut(s) 522, 533
Bsc4I CCNNNNNNNGG 1 cut(s) 436
BseCI ATCGAT 1 cut(s) 165
BseDI CCNNGG 2 cut(s) 522, 533
BseGI GGATG 2 cut(s) 180, 309
BseLI CCNNNNNNNGG 1 cut(s) 436
BseMII CTCAG 2 cut(s) 141, 456
BseXI GCAGC 5 cut(s) 50, 158, 238, 620, 623
BshFI GGCC 1 cut(s) 344
BshVI ATCGAT 1 cut(s) 165
BslI CCNNNNNNNGG 1 cut(s) 436
BsmAI GTCTC 1 cut(s) 72
BsmBI CGTCTC 1 cut(s) 72
BsnI GGCC 1 cut(s) 344
Bsp143I GATC 4 cut(s) 19, 52, 85, 460
BspANI GGCC 1 cut(s) 344
BspCNI CTCAG 2 cut(s) 142, 457
BspDI ATCGAT 1 cut(s) 165
BspLI GGNNCC 1 cut(s) 21
BspPI GGATC 3 cut(s) 14, 27, 455
BssECI CCNNGG 2 cut(s) 522, 533
BssMI GATC 4 cut(s) 19, 52, 85, 460
BssNAI GTATAC 1 cut(s) 31
BssT1I CCWWGG 1 cut(s) 522
Bst1107I GTATAC 1 cut(s) 31
Bst4CI ACNGT 3 cut(s) 83, 207, 425
BstBAI YACGTR 1 cut(s) 247
BstC8I GCNNGC 4 cut(s) 262, 342, 544, 609
BstDEI CTNAG 2 cut(s) 150, 465
BstEII GGTNACC 1 cut(s) 425
BstF5I GGATG 2 cut(s) 180, 309
BstH2I RGCGCY 1 cut(s) 492
BstHHI GCGC 1 cut(s) 491
BstKTI GATC 4 cut(s) 22, 55, 88, 463
BstMAI GTCTC 1 cut(s) 72
BstMBI GATC 4 cut(s) 19, 52, 85, 460
BstMWI GCNNNNNNNGC 2 cut(s) 257, 608
BstNSI RCATGY 2 cut(s) 410, 611
BstPI GGTNACC 1 cut(s) 425
BstV1I GCAGC 5 cut(s) 50, 158, 238, 620, 623
BstV2I GAAGAC 1 cut(s) 564
BstX2I RGATCY 1 cut(s) 19
BstXI CCANNNNNNTGG 1 cut(s) 210
BstYI RGATCY 1 cut(s) 19
BstZ17I GTATAC 1 cut(s) 31
Bsu15I ATCGAT 1 cut(s) 165
BsuI GTATCC 1 cut(s) 208
BsuRI GGCC 1 cut(s) 344
BsuTUI ATCGAT 1 cut(s) 165
BtsCI GGATG 2 cut(s) 180, 309
BtsIMutI CAGTG 1 cut(s) 203
Cac8I GCNNGC 4 cut(s) 262, 342, 544, 609
CfoI GCGC 1 cut(s) 491
ClaI ATCGAT 1 cut(s) 165
Csp6I GTAC 1 cut(s) 421
CviAII CATG 5 cut(s) 16, 241, 296, 407, 608
CviJI RGCY 9 cut(s) 149, 251, 264, 344, 458, 515, 528, 602, 633
CviKI_1 RGCY 9 cut(s) 149, 251, 264, 344, 458, 515, 528, 602, 633
CviQI GTAC 1 cut(s) 421
DdeI CTNAG 2 cut(s) 150, 465
DpnI GATC 4 cut(s) 21, 54, 87, 462
DpnII GATC 4 cut(s) 19, 52, 85, 460
EaeI YGGCCR 1 cut(s) 342
Eco130I CCWWGG 1 cut(s) 522
Eco91I GGTNACC 1 cut(s) 425
EcoO65I GGTNACC 1 cut(s) 425
EcoT14I CCWWGG 1 cut(s) 522
ErhI CCWWGG 1 cut(s) 522
Esp3I CGTCTC 1 cut(s) 72
FaeI CATG 5 cut(s) 19, 244, 299, 410, 611
FatI CATG 5 cut(s) 15, 240, 295, 406, 607
FblI GTMKAC 1 cut(s) 30
Fnu4HI GCNGC 5 cut(s) 39, 147, 252, 612, 634
FokI GGATG 2 cut(s) 167, 316
Fsp4HI GCNGC 5 cut(s) 39, 147, 252, 612, 634
FspBI CTAG 1 cut(s) 120
GlaI GCGC 1 cut(s) 490
GluI GCNGC 5 cut(s) 39, 147, 252, 612, 634
HaeII RGCGCY 1 cut(s) 492
HaeIII GGCC 1 cut(s) 344
HhaI GCGC 1 cut(s) 491
Hin1II CATG 5 cut(s) 19, 244, 299, 410, 611
Hin6I GCGC 1 cut(s) 489
HinP1I GCGC 1 cut(s) 489
HinfI GANTC 2 cut(s) 375, 497
HphI GGTGA 4 cut(s) 62, 95, 242, 419
Hpy166II GTNNAC 1 cut(s) 31
Hpy188I TCNGA 2 cut(s) 374, 534
Hpy188III TCNNGA 3 cut(s) 64, 184, 464
Hpy8I GTNNAC 1 cut(s) 31
HpyAV CCTTC 2 cut(s) 33, 311
HpyCH4III ACNGT 3 cut(s) 83, 207, 425
HpyCH4IV ACGT 2 cut(s) 246, 569
HpyCH4V TGCA 8 cut(s) 4, 109, 146, 244, 299, 607, 611, 636
HpyF10VI GCNNNNNNNGC 2 cut(s) 257, 608
HpyF3I CTNAG 2 cut(s) 150, 465
HpySE526I ACGT 2 cut(s) 246, 569
Hsp92II CATG 5 cut(s) 19, 244, 299, 410, 611
HspAI GCGC 1 cut(s) 489
Kzo9I GATC 4 cut(s) 19, 52, 85, 460
LmnI GCTCC 2 cut(s) 320, 375
LpnPI CCDG 6 cut(s) 77, 246, 326, 384, 477, 566
Lsp1109I GCAGC 5 cut(s) 50, 158, 238, 620, 623
LweI GCATC 2 cut(s) 189, 294
MaeI CTAG 1 cut(s) 120
MaeII ACGT 2 cut(s) 246, 569
MaeIII GTNAC 3 cut(s) 230, 425, 595
MalI GATC 4 cut(s) 21, 54, 87, 462
MboI GATC 4 cut(s) 19, 52, 85, 460
MboII GAAGA 6 cut(s) 92, 128, 163, 341, 404, 564
MflI RGATCY 1 cut(s) 19
MluCI AATT 4 cut(s) 72, 93, 382, 585
MnlI CCTC 3 cut(s) 28, 440, 528
MseI TTAA 4 cut(s) 96, 291, 554, 588
MslI CAYNNNNRTG 1 cut(s) 239
MspA1I CMGCKG 2 cut(s) 149, 633
MwoI GCNNNNNNNGC 2 cut(s) 257, 608
NdeII GATC 4 cut(s) 19, 52, 85, 460
NlaIII CATG 5 cut(s) 19, 244, 299, 410, 611
NlaIV GGNNCC 1 cut(s) 21
NmuCI GTSAC 3 cut(s) 230, 425, 595
NspI RCATGY 2 cut(s) 410, 611
PaeI GCATGC 1 cut(s) 611
PciI ACATGT 1 cut(s) 406
PfeI GAWTC 2 cut(s) 375, 497
PkrI GCNGC 5 cut(s) 40, 148, 253, 613, 635
Ppu21I YACGTR 1 cut(s) 247
PscI ACATGT 1 cut(s) 406
PshBI ATTAAT 3 cut(s) 96, 291, 588
PspEI GGTNACC 1 cut(s) 425
PspN4I GGNNCC 1 cut(s) 21
PsuI RGATCY 1 cut(s) 19
PvuII CAGCTG 2 cut(s) 149, 633
RsaI GTAC 1 cut(s) 422
RsaNI GTAC 1 cut(s) 421
RseI CAYNNNNRTG 1 cut(s) 239
SaqAI TTAA 4 cut(s) 96, 291, 554, 588
SatI GCNGC 5 cut(s) 39, 147, 252, 612, 634
Sau3AI GATC 4 cut(s) 19, 52, 85, 460
SfaNI GCATC 2 cut(s) 189, 294
SmiMI CAYNNNNRTG 1 cut(s) 239
SphI GCATGC 1 cut(s) 611
Sse9I AATT 4 cut(s) 72, 93, 382, 585
SspI AATATT 1 cut(s) 133
SspMI CTAG 1 cut(s) 120
StyI CCWWGG 1 cut(s) 522
TaaI ACNGT 3 cut(s) 83, 207, 425
TaiI ACGT 2 cut(s) 249, 572
TaqI TCGA 2 cut(s) 165, 453
TasI AATT 4 cut(s) 72, 93, 382, 585
TfiI GAWTC 2 cut(s) 375, 497
Tru1I TTAA 4 cut(s) 96, 291, 554, 588
Tru9I TTAA 4 cut(s) 96, 291, 554, 588
TscAI CASTG 1 cut(s) 210
TseFI GTSAC 3 cut(s) 230, 425, 595
TseI GCWGC 5 cut(s) 38, 146, 251, 611, 633
Tsp45I GTSAC 3 cut(s) 230, 425, 595
TspDTI ATGAA 4 cut(s) 128, 285, 330, 342
TspRI CASTG 1 cut(s) 210
VspI ATTAAT 3 cut(s) 96, 291, 588
XapI RAATTY 1 cut(s) 382
XceI RCATGY 2 cut(s) 410, 611
XmiI GTMKAC 1 cut(s) 30
XspI CTAG 1 cut(s) 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.