Rroxscaffold_1G00052310

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000319
Physical Location & Seq
Reverse (-)
73051776 .. 73057980
6205 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00052310.1

Sequence Viewer

Length: 762 bp
ATGATTTCTCTCCTATCTATAAGTAAACGTTTTGGTTCATGCAATCCTCTCCATTGCAATGTGAGGCTAAATTTTTCGAATATTTTGAGAGAGAGAGATCAAGTTGAAAGCTGCTGGATGGATCCTTCTATGTATAAGGCGGCAACAACTGGTGATGTCGGTTTTTTGCATAAGATTAGAGTTAGTGAAGTATCCAGTGATCTGCTCAGTCACAAGACCCCTAAAGGCAACAACATTCTTCACCTTGCAGCTGAACTCAAGAAAATCACTTTCTTTAAAGACGTCCCTTCCTTTCAGAAAGGCATTCCGCTGCTTTGGGACATCAACGAGATGGGTAACACCCCCTTACACATTGCTGCAAGAGTAGGCTGTGTTGAACTGGTAGACTTCCTTGTCGATCGTGCAAAAATGCCACATGTTCAAAGAGCTGGTGATCAGGAAAGGGGACCAAATTATGCTGAATCTTATAAAAATTTACTGCGAAAGACCAACTTGGAAATGCATACGGCATTGCATGTTGCTGCCAGATATGGTCATCGTGGAGTGGTAATTTCGTTAATGAAAGCAGATCCTGAATTGTGTTGTTCTACTAATAGCACAAAGGAGTCTCCCTTGTTCTTGGCAACCTGCAAGAGATTTTCAGACATTGCTCATGACATATTGAAAGTGCCGTCAATAACTCCATCTTTCCGAGGAATTAATGGTGTCACGGCTTTACATGTGGCCGTAACTCAGAACTACCCAGGCGCTGAAGGTACGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 Ank_5 PGG

Protein Analysis

253

Amino Acids

28.1

Weight (kDa)

8.95

Isoelectric Point (pI)

33.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 70 - 134 2.6e-06 Ankyrin repeats (3 copies)
Ank PF00023 112 - 135 7.7e-06 Ankyrin repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000319)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18590 FvH4_1g18590 FvH4_3g16140 FvH4_3g16141 FvH4_3g16160
malus_domestica MD02G1193600.v1.1 MD04G1020900.v1.1 MD04G1021000.v1.1 MD05G1212100.v1.1 MD05G1212300.v1.1 MD05G1213100.v1.1 MD05G1213400.v1.1 MD10G1197300.v1.1
prunus_persica Prupe.4G144500_v2.0.a1 Prupe.4G144600_v2.0.a1 Prupe.4G144800_v2.0.a1 Prupe.4G144900_v2.0.a1 Prupe.4G145100_v2.0.a1 Prupe.4G145300_v2.0.a1
pyrus_communis pycom02g15730 pycom02g15740 pycom05g19670 pycom05g19680 pycom10g17020 pycom11g27250
rosa_chinensis RchiOBHm_Chr2g0109301 RchiOBHm_Chr2g0109321 RchiOBHm_Chr2g0109341 RchiOBHm_Chr2g0109381 RchiOBHm_Chr3g0482301 RchiOBHm_Chr5g0027111 RchiOBHm_Chr5g0027121 RchiOBHm_Chr5g0027141 RchiOBHm_Chr5g0027181 RchiOBHm_Chr5g0027241
rosa_laevigata RLG00000017731 RLG00000017732 RLG00000032990 RLG00000032992 RLG00000032993 RLG00000032995 RLG00000032997 RLG00000033002
rosa_multiflora Rmu_sc0000135.1_g000002 Rmu_sc0000332.1_g000010 Rmu_sc0000882.1_g000028 Rmu_sc0000882.1_g000032 Rmu_sc0000882.1_g000033 Rmu_sc0000882.1_g000039 Rmu_sc0000882.1_g000043 Rmu_sc0000882.1_g000046 Rmu_sc0006065.1_g000003 Rmu_sc0006065.1_g000012 Rmu_sc0006065.1_g000018 Rmu_sc0006065.1_g000019 Rmu_sc0006065.1_g000022 Rmu_sc0007497.1_g000002 Rmu_sc0013610.1_g000011 Rmu_sc0015338.1_g000006 Rmu_ssc0000357.1_g000035
rosa_roxburghii Rroxscaffold_1G00052250 Rroxscaffold_1G00052280 Rroxscaffold_1G00052290 Rroxscaffold_1G00052310 Rroxscaffold_1G00052330 Rroxscaffold_1G00052360 Rroxscaffold_1G00052380 Rroxscaffold_1G00052390 Rroxscaffold_2G00134310 Rroxscaffold_2G00134330
rosa_rugosa Rorug02G0159400 Rorug05G0097300 Rorug05G0097500 Rorug05G0097600 Rorug05G0097700 Rorug05G0097700 Rorug05G0097700 Rorug05G0122900
rosa_samantha Rh2AG210900 Rh2AG211200 Rh2AG211500 Rh2BG221200 Rh2BG221800 Rh2CG213100 Rh2CG213200 Rh2CG213600 Rh3CG277900 Rh3CG278000 Rh3CG278600 Rh3DG274600 Rh5BG188600 Rh5BG188700 Rh5BG188900 Rh5BG189100 Rh5BG189200 Rh5BG189400 Rh5CG208400 Rh5CG208500 Rh5CG208700 Rh5CG209000 Rh5CG209100 Rh5CG209400 Rh5CG209700 Rh5CG209800 Rh5CG209900 Rh5CG210000 Rh5DG190500 Rh5DG190700 Rh5DG191200 Rh5DG191500
rosa_wichuraiana Rw3G022160 Rw5G017410 Rw5G017420 Rw5G017450 Rw5G017460 Rw5G017470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 468
AasI GACNNNNNNGTC 1 cut(s) 392
AatII GACGTC 1 cut(s) 285
Acc36I ACCTGC 1 cut(s) 635
AccI GTMKAC 1 cut(s) 384
AciI CCGC 2 cut(s) 140, 308
AclI AACGTT 1 cut(s) 28
AclWI GGATC 3 cut(s) 116, 129, 563
AcoI YGGCCR 1 cut(s) 723
AcsI RAATTY 2 cut(s) 70, 472
AcyI GRCGYC 1 cut(s) 282
AfaI GTAC 1 cut(s) 757
AflIII ACRYGT 2 cut(s) 415, 718
AgsI TTSAA 4 cut(s) 107, 377, 422, 664
AjnI CCWGG 1 cut(s) 742
AluBI AGCT 3 cut(s) 111, 251, 428
AluI AGCT 3 cut(s) 111, 251, 428
Alw26I GTCTC 1 cut(s) 612
AlwI GGATC 3 cut(s) 116, 129, 563
AlwNI CAGNNNCTG 2 cut(s) 572, 749
AoxI GGCC 1 cut(s) 723
ApeKI GCWGC 5 cut(s) 111, 248, 310, 356, 521
ApoI RAATTY 2 cut(s) 70, 472
AseI ATTAAT 1 cut(s) 699
AspLEI GCGC 1 cut(s) 749
AspS9I GGNCC 1 cut(s) 446
AsuHPI GGTGA 3 cut(s) 164, 233, 443
AsuII TTCGAA 1 cut(s) 77
AvaII GGWCC 1 cut(s) 446
BamHI GGATCC 1 cut(s) 121
BbvI GCAGC 5 cut(s) 98, 260, 297, 343, 508
BccI CCATC 3 cut(s) 112, 325, 691
BceAI ACGGC 4 cut(s) 522, 655, 710, 726
BciT130I CCWGG 1 cut(s) 744
BciVI GTATCC 1 cut(s) 202
BclI TGATCA 1 cut(s) 433
BcoDI GTCTC 1 cut(s) 612
BfoI RGCGCY 1 cut(s) 750
BfuAI ACCTGC 1 cut(s) 635
BfuI GTATCC 1 cut(s) 202
BisI GCNGC 6 cut(s) 112, 141, 249, 311, 357, 522
BlsI GCNGC 6 cut(s) 113, 142, 250, 312, 358, 523
Bme1390I CCNGG 1 cut(s) 744
Bme18I GGWCC 1 cut(s) 446
BmgT120I GGNCC 1 cut(s) 446
BmiI GGNNCC 2 cut(s) 123, 447
BmrFI CCNGG 1 cut(s) 744
Bpu14I TTCGAA 1 cut(s) 77
BpuEI CTTGAG 1 cut(s) 242
BsaAI YACGTR 1 cut(s) 759
BsaHI GRCGYC 1 cut(s) 282
BsaJI CCNNGG 2 cut(s) 691, 742
Bse1I ACTGG 3 cut(s) 154, 195, 384
Bse3DI GCAATG 5 cut(s) 52, 64, 351, 509, 645
BseBI CCWGG 1 cut(s) 744
BseDI CCNNGG 2 cut(s) 691, 742
BseGI GGATG 1 cut(s) 123
BseMI GCAATG 5 cut(s) 52, 64, 351, 509, 645
BseMII CTCAG 2 cut(s) 220, 746
BseNI ACTGG 3 cut(s) 154, 195, 384
BseXI GCAGC 5 cut(s) 98, 260, 297, 343, 508
Bsh1285I CGRYCG 1 cut(s) 400
BshFI GGCC 1 cut(s) 725
BsiEI CGRYCG 1 cut(s) 400
BslFI GGGAC 3 cut(s) 269, 332, 459
BsmAI GTCTC 1 cut(s) 612
BsmFI GGGAC 3 cut(s) 269, 332, 459
BsmI GAATGC 1 cut(s) 303
BsnI GGCC 1 cut(s) 725
Bsp119I TTCGAA 1 cut(s) 77
Bsp143I GATC 6 cut(s) 97, 121, 199, 397, 433, 568
BspACI CCGC 2 cut(s) 140, 308
BspANI GGCC 1 cut(s) 725
BspCNI CTCAG 2 cut(s) 219, 745
BspHI TCATGA 1 cut(s) 652
BspLI GGNNCC 2 cut(s) 123, 447
BspMI ACCTGC 1 cut(s) 635
BspPI GGATC 3 cut(s) 116, 129, 563
BspT104I TTCGAA 1 cut(s) 77
BsrDI GCAATG 5 cut(s) 52, 64, 351, 509, 645
BsrI ACTGG 3 cut(s) 154, 195, 384
BssECI CCNNGG 2 cut(s) 691, 742
BssMI GATC 6 cut(s) 97, 121, 199, 397, 433, 568
BssNI GRCGYC 1 cut(s) 282
Bst2UI CCWGG 1 cut(s) 744
BstACI GRCGYC 1 cut(s) 282
BstBAI YACGTR 1 cut(s) 759
BstBI TTCGAA 1 cut(s) 77
BstDEI CTNAG 2 cut(s) 206, 732
BstF5I GGATG 1 cut(s) 123
BstH2I RGCGCY 1 cut(s) 750
BstHHI GCGC 1 cut(s) 749
BstKTI GATC 6 cut(s) 100, 124, 202, 400, 436, 571
BstMAI GTCTC 1 cut(s) 612
BstMBI GATC 6 cut(s) 97, 121, 199, 397, 433, 568
BstMCI CGRYCG 1 cut(s) 400
BstNI CCWGG 1 cut(s) 744
BstNSI RCATGY 3 cut(s) 419, 518, 722
BstSCI CCNGG 1 cut(s) 742
BstSNI TACGTA 1 cut(s) 759
BstV1I GCAGC 5 cut(s) 98, 260, 297, 343, 508
BstX2I RGATCY 2 cut(s) 121, 568
BstYI RGATCY 2 cut(s) 121, 568
BsuI GTATCC 1 cut(s) 202
BsuRI GGCC 1 cut(s) 725
BtsCI GGATG 1 cut(s) 123
BtsIMutI CAGTG 1 cut(s) 202
BveI ACCTGC 1 cut(s) 635
CaiI CAGNNNCTG 2 cut(s) 572, 749
CciI TCATGA 1 cut(s) 652
CfoI GCGC 1 cut(s) 749
Cfr13I GGNCC 1 cut(s) 446
Csp6I GTAC 1 cut(s) 756
CviAII CATG 5 cut(s) 39, 416, 515, 653, 719
CviJI RGCY 7 cut(s) 67, 111, 251, 369, 428, 713, 725
CviKI_1 RGCY 7 cut(s) 67, 111, 251, 369, 428, 713, 725
CviQI GTAC 1 cut(s) 756
DdeI CTNAG 2 cut(s) 206, 732
DpnI GATC 6 cut(s) 99, 123, 201, 399, 435, 570
DpnII GATC 6 cut(s) 97, 121, 199, 397, 433, 568
DraI TTTAAA 1 cut(s) 277
DrdI GACNNNNNNGTC 1 cut(s) 392
DseDI GACNNNNNNGTC 1 cut(s) 392
EaeI YGGCCR 1 cut(s) 723
Eco105I TACGTA 1 cut(s) 759
Eco47I GGWCC 1 cut(s) 446
EcoRII CCWGG 1 cut(s) 742
EcoT22I ATGCAT 1 cut(s) 504
FaeI CATG 5 cut(s) 42, 419, 518, 656, 722
FalI AAGNNNNNCTT 2 cut(s) 476, 508
FaqI GGGAC 3 cut(s) 269, 332, 459
FatI CATG 5 cut(s) 38, 415, 514, 652, 718
FbaI TGATCA 1 cut(s) 433
FblI GTMKAC 1 cut(s) 384
Fnu4HI GCNGC 6 cut(s) 112, 141, 249, 311, 357, 522
FokI GGATG 1 cut(s) 130
Fsp4HI GCNGC 6 cut(s) 112, 141, 249, 311, 357, 522
GlaI GCGC 1 cut(s) 748
GluI GCNGC 6 cut(s) 112, 141, 249, 311, 357, 522
HaeII RGCGCY 1 cut(s) 750
HaeIII GGCC 1 cut(s) 725
HhaI GCGC 1 cut(s) 749
Hin1I GRCGYC 1 cut(s) 282
Hin1II CATG 5 cut(s) 42, 419, 518, 656, 722
Hin6I GCGC 1 cut(s) 747
HinP1I GCGC 1 cut(s) 747
HinfI GANTC 2 cut(s) 461, 605
HphI GGTGA 3 cut(s) 164, 233, 443
Hpy166II GTNNAC 2 cut(s) 26, 385
Hpy188I TCNGA 4 cut(s) 297, 643, 692, 735
Hpy188III TCNNGA 4 cut(s) 259, 437, 572, 653
Hpy8I GTNNAC 2 cut(s) 26, 385
HpyAV CCTTC 3 cut(s) 135, 297, 746
HpyCH4IV ACGT 3 cut(s) 28, 282, 758
HpyCH4V TGCA 9 cut(s) 42, 57, 169, 248, 359, 404, 502, 514, 630
HpyF3I CTNAG 2 cut(s) 206, 732
HpySE526I ACGT 3 cut(s) 28, 282, 758
Hsp92I GRCGYC 1 cut(s) 282
Hsp92II CATG 5 cut(s) 42, 419, 518, 656, 722
HspAI GCGC 1 cut(s) 747
Ksp22I TGATCA 1 cut(s) 433
Kzo9I GATC 6 cut(s) 97, 121, 199, 397, 433, 568
Lsp1109I GCAGC 5 cut(s) 98, 260, 297, 343, 508
MaeII ACGT 3 cut(s) 28, 282, 758
MaeIII GTNAC 4 cut(s) 209, 335, 706, 727
MalI GATC 6 cut(s) 99, 123, 201, 399, 435, 570
MboI GATC 6 cut(s) 97, 121, 199, 397, 433, 568
MboII GAAGA 1 cut(s) 230
MflI RGATCY 2 cut(s) 121, 568
MluCI AATT 6 cut(s) 70, 451, 472, 549, 575, 696
MlyI GAGTC 1 cut(s) 614
MnlI CCTC 3 cut(s) 57, 57, 686
Mph1103I ATGCAT 1 cut(s) 504
MseI TTAA 3 cut(s) 276, 557, 699
MslI CAYNNNNRTG 1 cut(s) 57
MspA1I CMGCKG 2 cut(s) 251, 310
MspR9I CCNGG 1 cut(s) 744
Mva1269I GAATGC 1 cut(s) 303
MvaI CCWGG 1 cut(s) 744
NdeII GATC 6 cut(s) 97, 121, 199, 397, 433, 568
NlaIII CATG 5 cut(s) 42, 419, 518, 656, 722
NlaIV GGNNCC 2 cut(s) 123, 447
NmuCI GTSAC 2 cut(s) 209, 706
NsiI ATGCAT 1 cut(s) 504
NspI RCATGY 3 cut(s) 419, 518, 722
NspV TTCGAA 1 cut(s) 77
PagI TCATGA 1 cut(s) 652
PciI ACATGT 2 cut(s) 415, 718
PctI GAATGC 1 cut(s) 303
PfeI GAWTC 1 cut(s) 461
PkrI GCNGC 6 cut(s) 113, 142, 250, 312, 358, 523
Ple19I CGATCG 1 cut(s) 400
PleI GAGTC 1 cut(s) 613
PpsI GAGTC 1 cut(s) 613
Ppu21I YACGTR 1 cut(s) 759
PscI ACATGT 2 cut(s) 415, 718
PshBI ATTAAT 1 cut(s) 699
PsiI TTATAA 1 cut(s) 468
Psp1406I AACGTT 1 cut(s) 28
Psp6I CCWGG 1 cut(s) 742
PspGI CCWGG 1 cut(s) 742
PspN4I GGNNCC 2 cut(s) 123, 447
PspPI GGNCC 1 cut(s) 446
PstNI CAGNNNCTG 2 cut(s) 572, 749
PsuI RGATCY 2 cut(s) 121, 568
PvuI CGATCG 1 cut(s) 400
PvuII CAGCTG 1 cut(s) 251
RsaI GTAC 1 cut(s) 757
RsaNI GTAC 1 cut(s) 756
RseI CAYNNNNRTG 1 cut(s) 57
SaqAI TTAA 3 cut(s) 276, 557, 699
SatI GCNGC 6 cut(s) 112, 141, 249, 311, 357, 522
Sau3AI GATC 6 cut(s) 97, 121, 199, 397, 433, 568
Sau96I GGNCC 1 cut(s) 446
SchI GAGTC 1 cut(s) 614
ScrFI CCNGG 1 cut(s) 744
SetI ASST 9 cut(s) 31, 113, 246, 253, 285, 430, 629, 757, 761
SfuI TTCGAA 1 cut(s) 77
SinI GGWCC 1 cut(s) 446
SmiMI CAYNNNNRTG 1 cut(s) 57
SmlI CTYRAG 1 cut(s) 257
SmoI CTYRAG 1 cut(s) 257
SnaBI TACGTA 1 cut(s) 759
Sse9I AATT 6 cut(s) 70, 451, 472, 549, 575, 696
SsiI CCGC 2 cut(s) 140, 308
SspI AATATT 1 cut(s) 82
StyD4I CCNGG 1 cut(s) 742
TaiI ACGT 3 cut(s) 31, 285, 761
TaqI TCGA 2 cut(s) 77, 396
TasI AATT 6 cut(s) 70, 451, 472, 549, 575, 696
TauI GCSGC 1 cut(s) 143
TfiI GAWTC 1 cut(s) 461
Tru1I TTAA 3 cut(s) 276, 557, 699
Tru9I TTAA 3 cut(s) 276, 557, 699
TscAI CASTG 1 cut(s) 202
TseFI GTSAC 2 cut(s) 209, 706
TseI GCWGC 5 cut(s) 111, 248, 310, 356, 521
Tsp45I GTSAC 2 cut(s) 209, 706
TspDTI ATGAA 2 cut(s) 27, 575
TspRI CASTG 1 cut(s) 202
VpaK11BI GGWCC 1 cut(s) 446
VspI ATTAAT 1 cut(s) 699
XapI RAATTY 2 cut(s) 70, 472
XceI RCATGY 3 cut(s) 419, 518, 722
XmiI GTMKAC 1 cut(s) 384
ZraI GACGTC 1 cut(s) 283
Zsp2I ATGCAT 1 cut(s) 504
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.