MD04G1021000.v1.1

Ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0000319
Physical Location & Seq
Reverse (-)
2491667 .. 2494577
2911 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1021000.v1.1.491

Sequence Viewer

Length: 618 bp
ATGGATACTTCTGTGTATGAGGCAGCAAGATCGGGGGATCTTGGTTTTCTTGAAAAAAGTGGAGACTGTGAGCATCTTCTTCTGCAGAAAACACCGAGGAATAATAATATTCTTCACCTTGCAGCTGAGTTTGGACAAATCGATTTCTTCAAAGTCGTCCTGATCCACAGTCAATCTCCACAGTTTTGGGCCACCAACAACAAAGGCGACACTCCCATGCATGTAGCTGCTAGAGCAGGCTGTGATGAAATAGTAGGGTTGCTCATTAATCAAGCAAGGAAGCTAGGAGTAGATGAGGAGGGTGCGCTGGCCGATGGCGAAGCGTATAAAGAGTTACTCCGGACCAAAAATTCAATTGGCGATACGGCACTACATGTTGCTATCAGACAAGGTGACCTCGAGGTCGTGATCCTATTGGTTGAAGCCGACTCCGGACTATGTTGTTTAACTAACATCGCCAACGAGTCGCCATTATTCTTAGCTATTTGCAAGGGGTATGGAAGCATAGCTCTGCACATGTTAGGCAATTCGCCAACGTCTCCTTCCTTTGAGGGGATTAATGGCGTCACGGCTTTACATGCCGCAGTTACTCGCATTAACTGTGAAGGCTGCAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_4 Ank_5 PGG

Protein Analysis

206

Amino Acids

21.99

Weight (kDa)

5.18

Isoelectric Point (pI)

30.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 24 - 91 1.8e-09 Ankyrin repeats (3 copies)
Ank_2 PF12796 108 - 174 9.4e-07 Ankyrin repeats (3 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000319)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18590 FvH4_1g18590 FvH4_3g16140 FvH4_3g16141 FvH4_3g16160
malus_domestica MD02G1193600.v1.1 MD04G1020900.v1.1 MD04G1021000.v1.1 MD05G1212100.v1.1 MD05G1212300.v1.1 MD05G1213100.v1.1 MD05G1213400.v1.1 MD10G1197300.v1.1
prunus_persica Prupe.4G144500_v2.0.a1 Prupe.4G144600_v2.0.a1 Prupe.4G144800_v2.0.a1 Prupe.4G144900_v2.0.a1 Prupe.4G145100_v2.0.a1 Prupe.4G145300_v2.0.a1
pyrus_communis pycom02g15730 pycom02g15740 pycom05g19670 pycom05g19680 pycom10g17020 pycom11g27250
rosa_chinensis RchiOBHm_Chr2g0109301 RchiOBHm_Chr2g0109321 RchiOBHm_Chr2g0109341 RchiOBHm_Chr2g0109381 RchiOBHm_Chr3g0482301 RchiOBHm_Chr5g0027111 RchiOBHm_Chr5g0027121 RchiOBHm_Chr5g0027141 RchiOBHm_Chr5g0027181 RchiOBHm_Chr5g0027241
rosa_laevigata RLG00000017731 RLG00000017732 RLG00000032990 RLG00000032992 RLG00000032993 RLG00000032995 RLG00000032997 RLG00000033002
rosa_multiflora Rmu_sc0000135.1_g000002 Rmu_sc0000332.1_g000010 Rmu_sc0000882.1_g000028 Rmu_sc0000882.1_g000032 Rmu_sc0000882.1_g000033 Rmu_sc0000882.1_g000039 Rmu_sc0000882.1_g000043 Rmu_sc0000882.1_g000046 Rmu_sc0006065.1_g000003 Rmu_sc0006065.1_g000012 Rmu_sc0006065.1_g000018 Rmu_sc0006065.1_g000019 Rmu_sc0006065.1_g000022 Rmu_sc0007497.1_g000002 Rmu_sc0013610.1_g000011 Rmu_sc0015338.1_g000006 Rmu_ssc0000357.1_g000035
rosa_roxburghii Rroxscaffold_1G00052250 Rroxscaffold_1G00052280 Rroxscaffold_1G00052290 Rroxscaffold_1G00052310 Rroxscaffold_1G00052330 Rroxscaffold_1G00052360 Rroxscaffold_1G00052380 Rroxscaffold_1G00052390 Rroxscaffold_2G00134310 Rroxscaffold_2G00134330
rosa_rugosa Rorug02G0159400 Rorug05G0097300 Rorug05G0097500 Rorug05G0097600 Rorug05G0097700 Rorug05G0097700 Rorug05G0097700 Rorug05G0122900
rosa_samantha Rh2AG210900 Rh2AG211200 Rh2AG211500 Rh2BG221200 Rh2BG221800 Rh2CG213100 Rh2CG213200 Rh2CG213600 Rh3CG277900 Rh3CG278000 Rh3CG278600 Rh3DG274600 Rh5BG188600 Rh5BG188700 Rh5BG188900 Rh5BG189100 Rh5BG189200 Rh5BG189400 Rh5CG208400 Rh5CG208500 Rh5CG208700 Rh5CG209000 Rh5CG209100 Rh5CG209400 Rh5CG209700 Rh5CG209800 Rh5CG209900 Rh5CG210000 Rh5DG190500 Rh5DG190700 Rh5DG191200 Rh5DG191500
rosa_wichuraiana Rw3G022160 Rw5G017410 Rw5G017420 Rw5G017450 Rw5G017460 Rw5G017470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 401
AbsI CCTCGAGG 1 cut(s) 398
AccIII TCCGGA 2 cut(s) 339, 431
AciI CCGC 1 cut(s) 582
AclWI GGATC 3 cut(s) 45, 157, 403
AcoI YGGCCR 1 cut(s) 309
AcsI RAATTY 1 cut(s) 349
AcyI GRCGYC 1 cut(s) 564
AfiI CCNNNNNNNGG 1 cut(s) 552
AflIII ACRYGT 2 cut(s) 373, 516
AgsI TTSAA 4 cut(s) 53, 151, 354, 422
AjuI GAANNNNNNNTTGG 2 cut(s) 526, 558
AluBI AGCT 5 cut(s) 125, 227, 283, 482, 509
AluI AGCT 5 cut(s) 125, 227, 283, 482, 509
Alw26I GTCTC 2 cut(s) 57, 543
AlwI GGATC 3 cut(s) 45, 157, 403
Ama87I CYCGRG 1 cut(s) 398
Aor13HI TCCGGA 2 cut(s) 339, 431
AoxI GGCC 2 cut(s) 189, 309
ApeKI GCWGC 4 cut(s) 23, 122, 227, 609
ApoI RAATTY 1 cut(s) 349
AseI ATTAAT 2 cut(s) 267, 558
AspLEI GCGC 1 cut(s) 307
AspS9I GGNCC 2 cut(s) 189, 342
AsuHPI GGTGA 2 cut(s) 107, 404
AvaI CYCGRG 1 cut(s) 398
AvaII GGWCC 1 cut(s) 342
BaeI ACNNNNGTAYC 1 cut(s) 30
BbvI GCAGC 4 cut(s) 35, 134, 214, 596
BccI CCATC 1 cut(s) 308
BceAI ACGGC 2 cut(s) 381, 585
BcgI CGANNNNNNTGC 2 cut(s) 12, 46
BcoDI GTCTC 2 cut(s) 57, 543
BfaI CTAG 2 cut(s) 231, 284
BfmI CTRYAG 2 cut(s) 83, 610
BisI GCNGC 5 cut(s) 24, 123, 228, 582, 610
BlsI GCNGC 5 cut(s) 25, 124, 229, 583, 611
Bme18I GGWCC 1 cut(s) 342
BmeT110I CYCGRG 1 cut(s) 398
BmgT120I GGNCC 2 cut(s) 189, 342
BmsI GCATC 1 cut(s) 82
Bsa29I ATCGAT 1 cut(s) 141
BsaHI GRCGYC 1 cut(s) 564
BsaJI CCNNGG 1 cut(s) 95
BsaWI WCCGGW 2 cut(s) 339, 431
Bsc4I CCNNNNNNNGG 1 cut(s) 552
BseAI TCCGGA 2 cut(s) 339, 431
BseCI ATCGAT 1 cut(s) 141
BseDI CCNNGG 1 cut(s) 95
BseLI CCNNNNNNNGG 1 cut(s) 552
BseMII CTCAG 1 cut(s) 117
BseRI GAGGAG 1 cut(s) 311
BseXI GCAGC 4 cut(s) 35, 134, 214, 596
BsgI GTGCAG 1 cut(s) 497
BshFI GGCC 2 cut(s) 191, 311
BshVI ATCGAT 1 cut(s) 141
BsiHKCI CYCGRG 1 cut(s) 398
BsiSI CCGG 2 cut(s) 340, 432
BslI CCNNNNNNNGG 1 cut(s) 552
BsmAI GTCTC 2 cut(s) 57, 543
BsmBI CGTCTC 1 cut(s) 543
BsnI GGCC 2 cut(s) 191, 311
BsoBI CYCGRG 1 cut(s) 398
Bsp13I TCCGGA 2 cut(s) 339, 431
Bsp143I GATC 4 cut(s) 29, 37, 162, 408
BspACI CCGC 1 cut(s) 582
BspANI GGCC 2 cut(s) 191, 311
BspCNI CTCAG 1 cut(s) 118
BspDI ATCGAT 1 cut(s) 141
BspEI TCCGGA 2 cut(s) 339, 431
BspMAI CTGCAG 2 cut(s) 87, 614
BspPI GGATC 3 cut(s) 45, 157, 403
BssECI CCNNGG 1 cut(s) 95
BssMI GATC 4 cut(s) 29, 37, 162, 408
BssNI GRCGYC 1 cut(s) 564
Bst4CI ACNGT 4 cut(s) 68, 170, 183, 602
BstACI GRCGYC 1 cut(s) 564
BstC8I GCNNGC 2 cut(s) 238, 309
BstDEI CTNAG 2 cut(s) 126, 478
BstEII GGTNACC 1 cut(s) 392
BstHHI GCGC 1 cut(s) 307
BstKTI GATC 4 cut(s) 32, 40, 165, 411
BstMAI GTCTC 2 cut(s) 57, 543
BstMBI GATC 4 cut(s) 29, 37, 162, 408
BstMWI GCNNNNNNNGC 2 cut(s) 233, 578
BstNSI RCATGY 4 cut(s) 224, 377, 520, 581
BstPI GGTNACC 1 cut(s) 392
BstSFI CTRYAG 2 cut(s) 83, 610
BstV1I GCAGC 4 cut(s) 35, 134, 214, 596
BstX2I RGATCY 1 cut(s) 37
BstXI CCANNNNNNTGG 1 cut(s) 186
BstYI RGATCY 1 cut(s) 37
Bsu15I ATCGAT 1 cut(s) 141
BsuRI GGCC 2 cut(s) 191, 311
BsuTUI ATCGAT 1 cut(s) 141
BtgZI GCGATG 1 cut(s) 439
Cac8I GCNNGC 2 cut(s) 238, 309
CfoI GCGC 1 cut(s) 307
Cfr13I GGNCC 2 cut(s) 189, 342
ClaI ATCGAT 1 cut(s) 141
CseI GACGC 1 cut(s) 553
CviAII CATG 5 cut(s) 217, 221, 374, 517, 578
DdeI CTNAG 2 cut(s) 126, 478
DpnI GATC 4 cut(s) 31, 39, 164, 410
DpnII GATC 4 cut(s) 29, 37, 162, 408
DrdI GACNNNNNNGTC 1 cut(s) 401
DseDI GACNNNNNNGTC 1 cut(s) 401
EaeI YGGCCR 1 cut(s) 309
Eco47I GGWCC 1 cut(s) 342
Eco88I CYCGRG 1 cut(s) 398
Eco91I GGTNACC 1 cut(s) 392
EcoO65I GGTNACC 1 cut(s) 392
EcoT22I ATGCAT 1 cut(s) 222
Esp3I CGTCTC 1 cut(s) 543
FaeI CATG 5 cut(s) 220, 224, 377, 520, 581
FatI CATG 5 cut(s) 216, 220, 373, 516, 577
Fnu4HI GCNGC 5 cut(s) 24, 123, 228, 582, 610
Fsp4HI GCNGC 5 cut(s) 24, 123, 228, 582, 610
FspBI CTAG 2 cut(s) 231, 284
GlaI GCGC 1 cut(s) 306
GluI GCNGC 5 cut(s) 24, 123, 228, 582, 610
HaeIII GGCC 2 cut(s) 191, 311
HapII CCGG 2 cut(s) 340, 432
HgaI GACGC 1 cut(s) 553
HhaI GCGC 1 cut(s) 307
Hin1I GRCGYC 1 cut(s) 564
Hin1II CATG 5 cut(s) 220, 224, 377, 520, 581
Hin6I GCGC 1 cut(s) 305
HinP1I GCGC 1 cut(s) 305
HinfI GANTC 2 cut(s) 428, 464
HpaII CCGG 2 cut(s) 340, 432
HphI GGTGA 2 cut(s) 107, 404
Hpy188I TCNGA 1 cut(s) 386
Hpy188III TCNNGA 5 cut(s) 50, 160, 340, 406, 432
HpyAV CCTTC 2 cut(s) 552, 599
HpyCH4III ACNGT 4 cut(s) 68, 170, 183, 602
HpyCH4IV ACGT 1 cut(s) 536
HpyCH4V TGCA 6 cut(s) 85, 122, 220, 489, 514, 612
HpyF10VI GCNNNNNNNGC 2 cut(s) 233, 578
HpyF3I CTNAG 2 cut(s) 126, 478
HpySE526I ACGT 1 cut(s) 536
Hsp92I GRCGYC 1 cut(s) 564
Hsp92II CATG 5 cut(s) 220, 224, 377, 520, 581
HspAI GCGC 1 cut(s) 305
Kpn2I TCCGGA 2 cut(s) 339, 431
Kzo9I GATC 4 cut(s) 29, 37, 162, 408
LpnPI CCDG 5 cut(s) 173, 222, 293, 353, 445
Lsp1109I GCAGC 4 cut(s) 35, 134, 214, 596
LweI GCATC 1 cut(s) 82
MaeI CTAG 2 cut(s) 231, 284
MaeII ACGT 1 cut(s) 536
MaeIII GTNAC 4 cut(s) 333, 392, 565, 586
MalI GATC 4 cut(s) 31, 39, 164, 410
MboI GATC 4 cut(s) 29, 37, 162, 408
MboII GAAGA 4 cut(s) 68, 71, 104, 139
MfeI CAATTG 1 cut(s) 354
MflI RGATCY 1 cut(s) 37
MluCI AATT 3 cut(s) 349, 354, 526
MlyI GAGTC 2 cut(s) 422, 473
MnlI CCTC 7 cut(s) 13, 90, 289, 292, 394, 407, 544
Mph1103I ATGCAT 1 cut(s) 222
MroI TCCGGA 2 cut(s) 339, 431
MseI TTAA 4 cut(s) 267, 446, 558, 597
MslI CAYNNNNRTG 1 cut(s) 215
MspA1I CMGCKG 1 cut(s) 125
MspI CCGG 2 cut(s) 340, 432
MunI CAATTG 1 cut(s) 354
MwoI GCNNNNNNNGC 2 cut(s) 233, 578
NdeII GATC 4 cut(s) 29, 37, 162, 408
NlaIII CATG 5 cut(s) 220, 224, 377, 520, 581
NmuCI GTSAC 2 cut(s) 392, 565
NsiI ATGCAT 1 cut(s) 222
NspI RCATGY 4 cut(s) 224, 377, 520, 581
PaeR7I CTCGAG 1 cut(s) 398
PciI ACATGT 2 cut(s) 373, 516
PkrI GCNGC 5 cut(s) 25, 124, 229, 583, 611
PleI GAGTC 2 cut(s) 422, 472
PpsI GAGTC 2 cut(s) 422, 472
PscI ACATGT 2 cut(s) 373, 516
PshBI ATTAAT 2 cut(s) 267, 558
PspEI GGTNACC 1 cut(s) 392
PspPI GGNCC 2 cut(s) 189, 342
PspXI VCTCGAGB 1 cut(s) 398
PstI CTGCAG 2 cut(s) 87, 614
PsuI RGATCY 1 cut(s) 37
PvuII CAGCTG 1 cut(s) 125
RseI CAYNNNNRTG 1 cut(s) 215
SaqAI TTAA 4 cut(s) 267, 446, 558, 597
SatI GCNGC 5 cut(s) 24, 123, 228, 582, 610
Sau3AI GATC 4 cut(s) 29, 37, 162, 408
Sau96I GGNCC 2 cut(s) 189, 342
SchI GAGTC 2 cut(s) 422, 473
SfaNI GCATC 1 cut(s) 82
SfcI CTRYAG 2 cut(s) 83, 610
Sfr274I CTCGAG 1 cut(s) 398
SinI GGWCC 1 cut(s) 342
SlaI CTCGAG 1 cut(s) 398
SmiMI CAYNNNNRTG 1 cut(s) 215
SmlI CTYRAG 1 cut(s) 398
SmoI CTYRAG 1 cut(s) 398
Sse9I AATT 3 cut(s) 349, 354, 526
SsiI CCGC 1 cut(s) 582
SspI AATATT 1 cut(s) 109
SspMI CTAG 2 cut(s) 231, 284
TaaI ACNGT 4 cut(s) 68, 170, 183, 602
TaiI ACGT 1 cut(s) 539
TaqI TCGA 2 cut(s) 141, 399
TasI AATT 3 cut(s) 349, 354, 526
TauI GCSGC 1 cut(s) 584
Tru1I TTAA 4 cut(s) 267, 446, 558, 597
Tru9I TTAA 4 cut(s) 267, 446, 558, 597
TseFI GTSAC 2 cut(s) 392, 565
TseI GCWGC 4 cut(s) 23, 122, 227, 609
Tsp45I GTSAC 2 cut(s) 392, 565
TspDTI ATGAA 1 cut(s) 261
VpaK11BI GGWCC 1 cut(s) 342
VspI ATTAAT 2 cut(s) 267, 558
XapI RAATTY 1 cut(s) 349
XceI RCATGY 4 cut(s) 224, 377, 520, 581
XhoI CTCGAG 1 cut(s) 398
XspI CTAG 2 cut(s) 231, 284
Zsp2I ATGCAT 1 cut(s) 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.