Rmu_sc0000882.1_g000043

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000882.1
OG0000319
Physical Location & Seq
Forward (+)
227687 .. 229116
1430 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000882.1_g000043.1.cds

Sequence Viewer

Length: 1044 bp
atggctatcatgttttgggcagccaacaaaaagggcgatactcctctgcacgtggccgctagagtaggctgtgatgaaatagttgagttccttatcgatcaggcgaaagcgatgcacataagaggagctgatgaggaaagctgtcatcgaaagtcgctacttcggatgacgaatttagaaatggatacggctctgcatgtggctgtgcggtacggtcatcttggagtggtggttatgttaatggaagccgatcctgaaaagtgttgtttgactaacagggcagatgaatctgttttgttcttggctgctaggaaggggtctgcagagattgctctttatctgttgaacgagtatccggtgtgtccttgttttcgagggactaatggtgtgacggctttgcacgccgctgtaactcgcagcaacctcaccagcaaaggcattgtgaggactatggtgtccaaaaatcctgagatgattaaaaacgtcgatgcacttggctggacaccgttacactacgcagcatttagacggaaccttgaagcgactagagtcctgatgcaatgtgatagttctgcatcttacatcttagacaactctggaatgtcggctctccatgtagcagcccatgctggccacaccaagataatgggagaactgattcggtggcggccggatatttgtgatctgttgaatgacaaaggccaaacggctttacatgcggcagtattaggagcacgaattaatgttgtggagtacatattgaagacgcctaagcttgcagcgattataaacgaaacagataaagatggaaacactcctttgcacttggctgcccttcagcaaaatgataaaatcatcaaagttctgtcaggcgatcgtagagtggacatgattgctattaataaggatttctcgaagcccattgacatgtttcttggtgacaatattggtgaacaggaaacaattcgcagtacgtggtatggttttgcacaacctggggtgctccgttggtgtgccatttttccaacaacaaatcagtcgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_4 Ank_5 PGG

Protein Analysis

347

Amino Acids

38.34

Weight (kDa)

7.17

Isoelectric Point (pI)

31.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000319)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18590 FvH4_1g18590 FvH4_3g16140 FvH4_3g16141 FvH4_3g16160
malus_domestica MD02G1193600.v1.1 MD04G1020900.v1.1 MD04G1021000.v1.1 MD05G1212100.v1.1 MD05G1212300.v1.1 MD05G1213100.v1.1 MD05G1213400.v1.1 MD10G1197300.v1.1
prunus_persica Prupe.4G144500_v2.0.a1 Prupe.4G144600_v2.0.a1 Prupe.4G144800_v2.0.a1 Prupe.4G144900_v2.0.a1 Prupe.4G145100_v2.0.a1 Prupe.4G145300_v2.0.a1
pyrus_communis pycom02g15730 pycom02g15740 pycom05g19670 pycom05g19680 pycom10g17020 pycom11g27250
rosa_chinensis RchiOBHm_Chr2g0109301 RchiOBHm_Chr2g0109321 RchiOBHm_Chr2g0109341 RchiOBHm_Chr2g0109381 RchiOBHm_Chr3g0482301 RchiOBHm_Chr5g0027111 RchiOBHm_Chr5g0027121 RchiOBHm_Chr5g0027141 RchiOBHm_Chr5g0027181 RchiOBHm_Chr5g0027241
rosa_laevigata RLG00000017731 RLG00000017732 RLG00000032990 RLG00000032992 RLG00000032993 RLG00000032995 RLG00000032997 RLG00000033002
rosa_multiflora Rmu_sc0000135.1_g000002 Rmu_sc0000332.1_g000010 Rmu_sc0000882.1_g000028 Rmu_sc0000882.1_g000032 Rmu_sc0000882.1_g000033 Rmu_sc0000882.1_g000039 Rmu_sc0000882.1_g000043 Rmu_sc0000882.1_g000046 Rmu_sc0006065.1_g000003 Rmu_sc0006065.1_g000012 Rmu_sc0006065.1_g000018 Rmu_sc0006065.1_g000019 Rmu_sc0006065.1_g000022 Rmu_sc0007497.1_g000002 Rmu_sc0013610.1_g000011 Rmu_sc0015338.1_g000006 Rmu_ssc0000357.1_g000035
rosa_roxburghii Rroxscaffold_1G00052250 Rroxscaffold_1G00052280 Rroxscaffold_1G00052290 Rroxscaffold_1G00052310 Rroxscaffold_1G00052330 Rroxscaffold_1G00052360 Rroxscaffold_1G00052380 Rroxscaffold_1G00052390 Rroxscaffold_2G00134310 Rroxscaffold_2G00134330
rosa_rugosa Rorug02G0159400 Rorug05G0097300 Rorug05G0097500 Rorug05G0097600 Rorug05G0097700 Rorug05G0097700 Rorug05G0097700 Rorug05G0122900
rosa_samantha Rh2AG210900 Rh2AG211200 Rh2AG211500 Rh2BG221200 Rh2BG221800 Rh2CG213100 Rh2CG213200 Rh2CG213600 Rh3CG277900 Rh3CG278000 Rh3CG278600 Rh3DG274600 Rh5BG188600 Rh5BG188700 Rh5BG188900 Rh5BG189100 Rh5BG189200 Rh5BG189400 Rh5CG208400 Rh5CG208500 Rh5CG208700 Rh5CG209000 Rh5CG209100 Rh5CG209400 Rh5CG209700 Rh5CG209800 Rh5CG209900 Rh5CG210000 Rh5DG190500 Rh5DG190700 Rh5DG191200 Rh5DG191500
rosa_wichuraiana Rw3G022160 Rw5G017410 Rw5G017420 Rw5G017450 Rw5G017460 Rw5G017470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 788
AasI GACNNNNNNGTC 1 cut(s) 454
AciI CCGC 5 cut(s) 57, 208, 405, 667, 719
AclWI GGATC 1 cut(s) 245
AcoI YGGCCR 3 cut(s) 54, 631, 668
AcsI RAATTY 1 cut(s) 172
AcuI CTGAAG 1 cut(s) 821
AcvI CACGTG 1 cut(s) 52
AcyI GRCGYC 1 cut(s) 767
AfaI GTAC 3 cut(s) 212, 755, 973
AflIII ACRYGT 1 cut(s) 927
AgsI TTSAA 4 cut(s) 346, 539, 691, 763
AjnI CCWGG 1 cut(s) 994
AluBI AGCT 3 cut(s) 128, 141, 775
AluI AGCT 3 cut(s) 128, 141, 775
Alw21I GWGCWC 2 cut(s) 736, 1005
AlwI GGATC 1 cut(s) 245
AoxI GGCC 4 cut(s) 54, 631, 668, 700
ApeKI GCWGC 7 cut(s) 20, 305, 417, 518, 620, 779, 830
ApoI RAATTY 1 cut(s) 172
AseI ATTAAT 2 cut(s) 741, 900
Asp700I GAANNNNTTC 2 cut(s) 657, 963
AsuHPI GGTGA 3 cut(s) 418, 950, 962
BalI TGGCCA 1 cut(s) 633
BbrPI CACGTG 1 cut(s) 52
BbsI GAAGAC 1 cut(s) 770
Bbv12I GWGCWC 2 cut(s) 736, 1005
BbvI GCAGC 7 cut(s) 32, 292, 429, 530, 632, 791, 817
BccI CCATC 1 cut(s) 800
BceAI ACGGC 3 cut(s) 204, 408, 723
BcgI CGANNNNNNTGC 2 cut(s) 94, 128
BciT130I CCWGG 1 cut(s) 996
BciVI GTATCC 2 cut(s) 178, 363
BfaI CTAG 3 cut(s) 60, 309, 546
BfmI CTRYAG 1 cut(s) 321
BfuI GTATCC 2 cut(s) 178, 363
Bme1390I CCNGG 1 cut(s) 996
BmiI GGNNCC 1 cut(s) 533
BmrFI CCNGG 1 cut(s) 996
BmsI GCATC 4 cut(s) 102, 478, 546, 584
BoxI GACNNNNGTC 1 cut(s) 548
BpiI GAAGAC 1 cut(s) 770
Bpu10I CCTNAGC 1 cut(s) 771
Bsa29I ATCGAT 1 cut(s) 96
BsaAI YACGTR 2 cut(s) 52, 975
BsaHI GRCGYC 1 cut(s) 767
BsaJI CCNNGG 1 cut(s) 995
BsaWI WCCGGW 1 cut(s) 355
BsaXI ACNNNNNCTCC 2 cut(s) 216, 246
Bse3DI GCAATG 1 cut(s) 566
BseBI CCWGG 1 cut(s) 996
BseCI ATCGAT 1 cut(s) 96
BseDI CCNNGG 1 cut(s) 995
BseGI GGATG 1 cut(s) 171
BseMI GCAATG 1 cut(s) 566
BseMII CTCAG 1 cut(s) 459
BseRI GAGGAG 2 cut(s) 33, 138
BseX3I CGGCCG 1 cut(s) 668
BseXI GCAGC 7 cut(s) 32, 292, 429, 530, 632, 791, 817
BsgI GTGCAG 1 cut(s) 32
Bsh1285I CGRYCG 2 cut(s) 671, 877
BshFI GGCC 4 cut(s) 56, 633, 670, 702
BshVI ATCGAT 1 cut(s) 96
BsiEI CGRYCG 2 cut(s) 671, 877
BsiHKAI GWGCWC 2 cut(s) 736, 1005
BsiSI CCGG 2 cut(s) 356, 671
BslFI GGGAC 1 cut(s) 391
BsmFI GGGAC 1 cut(s) 391
BsnI GGCC 4 cut(s) 56, 633, 670, 702
Bsp1286I GDGCHC 2 cut(s) 736, 1005
Bsp143I GATC 4 cut(s) 97, 250, 682, 874
BspACI CCGC 5 cut(s) 57, 208, 405, 667, 719
BspANI GGCC 4 cut(s) 56, 633, 670, 702
BspCNI CTCAG 1 cut(s) 460
BspDI ATCGAT 1 cut(s) 96
BspLI GGNNCC 1 cut(s) 533
BspMAI CTGCAG 1 cut(s) 325
BspPI GGATC 1 cut(s) 245
BsrDI GCAATG 1 cut(s) 566
BssECI CCNNGG 1 cut(s) 995
BssMI GATC 4 cut(s) 97, 250, 682, 874
BssNI GRCGYC 1 cut(s) 767
Bst2UI CCWGG 1 cut(s) 996
Bst4CI ACNGT 2 cut(s) 215, 507
BstACI GRCGYC 1 cut(s) 767
BstAPI GCANNNNNTGC 2 cut(s) 329, 626
BstBAI YACGTR 2 cut(s) 52, 975
BstC8I GCNNGC 3 cut(s) 402, 631, 777
BstDEI CTNAG 3 cut(s) 468, 586, 771
BstF5I GGATG 1 cut(s) 171
BstKTI GATC 4 cut(s) 100, 253, 685, 877
BstMBI GATC 4 cut(s) 97, 250, 682, 874
BstMCI CGRYCG 2 cut(s) 671, 877
BstMWI GCNNNNNNNGC 4 cut(s) 329, 401, 626, 716
BstNI CCWGG 1 cut(s) 996
BstNSI RCATGY 3 cut(s) 200, 719, 931
BstPAI GACNNNNGTC 1 cut(s) 548
BstSCI CCNGG 1 cut(s) 994
BstSFI CTRYAG 1 cut(s) 321
BstV1I GCAGC 7 cut(s) 32, 292, 429, 530, 632, 791, 817
BstV2I GAAGAC 1 cut(s) 770
BstXI CCANNNNNNTGG 1 cut(s) 646
BstZI CGGCCG 1 cut(s) 668
Bsu15I ATCGAT 1 cut(s) 96
BsuI GTATCC 2 cut(s) 178, 363
BsuRI GGCC 4 cut(s) 56, 633, 670, 702
BsuTUI ATCGAT 1 cut(s) 96
BtgZI GCGATG 1 cut(s) 125
BtsCI GGATG 1 cut(s) 171
Cac8I GCNNGC 3 cut(s) 402, 631, 777
ClaI ATCGAT 1 cut(s) 96
CseI GACGC 1 cut(s) 775
Csp6I GTAC 3 cut(s) 211, 754, 972
CviAII CATG 7 cut(s) 10, 197, 614, 626, 716, 889, 928
CviQI GTAC 3 cut(s) 211, 754, 972
DdeI CTNAG 3 cut(s) 468, 586, 771
DpnI GATC 4 cut(s) 99, 252, 684, 876
DpnII GATC 4 cut(s) 97, 250, 682, 874
DrdI GACNNNNNNGTC 1 cut(s) 454
DseDI GACNNNNNNGTC 1 cut(s) 454
EaeI YGGCCR 3 cut(s) 54, 631, 668
EagI CGGCCG 1 cut(s) 668
EclXI CGGCCG 1 cut(s) 668
Eco52I CGGCCG 1 cut(s) 668
Eco57I CTGAAG 1 cut(s) 821
Eco72I CACGTG 1 cut(s) 52
EcoRII CCWGG 1 cut(s) 994
FaeI CATG 7 cut(s) 13, 200, 617, 629, 719, 892, 931
FaqI GGGAC 1 cut(s) 391
FatI CATG 7 cut(s) 9, 196, 613, 625, 715, 888, 927
FokI GGATG 1 cut(s) 178
FspBI CTAG 3 cut(s) 60, 309, 546
HaeIII GGCC 4 cut(s) 56, 633, 670, 702
HapII CCGG 2 cut(s) 356, 671
HgaI GACGC 1 cut(s) 775
Hin1I GRCGYC 1 cut(s) 767
Hin1II CATG 7 cut(s) 13, 200, 617, 629, 719, 892, 931
HindIII AAGCTT 1 cut(s) 773
HinfI GANTC 3 cut(s) 287, 549, 658
HpaII CCGG 2 cut(s) 356, 671
HphI GGTGA 3 cut(s) 418, 950, 962
Hpy166II GTNNAC 2 cut(s) 886, 953
Hpy188I TCNGA 1 cut(s) 165
Hpy188III TCNNGA 6 cut(s) 254, 467, 553, 597, 913, 1041
Hpy8I GTNNAC 2 cut(s) 886, 953
Hpy99I CGWCG 1 cut(s) 488
HpyAV CCTTC 2 cut(s) 307, 845
HpyCH4III ACNGT 2 cut(s) 215, 507
HpyCH4IV ACGT 3 cut(s) 51, 483, 974
HpyF10VI GCNNNNNNNGC 4 cut(s) 329, 401, 626, 716
HpyF3I CTNAG 3 cut(s) 468, 586, 771
HpySE526I ACGT 3 cut(s) 51, 483, 974
Hsp92I GRCGYC 1 cut(s) 767
Hsp92II CATG 7 cut(s) 13, 200, 617, 629, 719, 892, 931
Kzo9I GATC 4 cut(s) 97, 250, 682, 874
LmnI GCTCC 3 cut(s) 125, 731, 1008
Lsp1109I GCAGC 7 cut(s) 32, 292, 429, 530, 632, 791, 817
LweI GCATC 4 cut(s) 102, 478, 546, 584
MaeI CTAG 3 cut(s) 60, 309, 546
MaeII ACGT 3 cut(s) 51, 483, 974
MaeIII GTNAC 4 cut(s) 388, 409, 507, 938
MalI GATC 4 cut(s) 99, 252, 684, 876
MboI GATC 4 cut(s) 97, 250, 682, 874
MboII GAAGA 1 cut(s) 775
MhlI GDGCHC 2 cut(s) 736, 1005
MlsI TGGCCA 1 cut(s) 633
MluCI AATT 3 cut(s) 172, 738, 963
MluNI TGGCCA 1 cut(s) 633
MlyI GAGTC 1 cut(s) 558
MnlI CCTC 6 cut(s) 54, 116, 127, 368, 434, 438
Mox20I TGGCCA 1 cut(s) 633
MroXI GAANNNNTTC 2 cut(s) 657, 963
MscI TGGCCA 1 cut(s) 633
MseI TTAA 4 cut(s) 239, 477, 741, 900
MslI CAYNNNNRTG 1 cut(s) 926
Msp20I TGGCCA 1 cut(s) 633
MspA1I CMGCKG 1 cut(s) 407
MspI CCGG 2 cut(s) 356, 671
MspR9I CCNGG 1 cut(s) 996
MvaI CCWGG 1 cut(s) 996
MwoI GCNNNNNNNGC 4 cut(s) 329, 401, 626, 716
NdeII GATC 4 cut(s) 97, 250, 682, 874
NlaIII CATG 7 cut(s) 13, 200, 617, 629, 719, 892, 931
NlaIV GGNNCC 1 cut(s) 533
NmuCI GTSAC 2 cut(s) 388, 938
NspI RCATGY 3 cut(s) 200, 719, 931
PciI ACATGT 1 cut(s) 927
PdmI GAANNNNTTC 2 cut(s) 657, 963
PfeI GAWTC 2 cut(s) 287, 658
Ple19I CGATCG 1 cut(s) 877
PleI GAGTC 1 cut(s) 557
PmaCI CACGTG 1 cut(s) 52
PmlI CACGTG 1 cut(s) 52
PpsI GAGTC 1 cut(s) 557
Ppu21I YACGTR 2 cut(s) 52, 975
PscI ACATGT 1 cut(s) 927
PshAI GACNNNNGTC 1 cut(s) 548
PshBI ATTAAT 2 cut(s) 741, 900
PsiI TTATAA 1 cut(s) 788
Psp6I CCWGG 1 cut(s) 994
PspCI CACGTG 1 cut(s) 52
PspGI CCWGG 1 cut(s) 994
PspN4I GGNNCC 1 cut(s) 533
PstI CTGCAG 1 cut(s) 325
PvuI CGATCG 1 cut(s) 877
RsaI GTAC 3 cut(s) 212, 755, 973
RsaNI GTAC 3 cut(s) 211, 754, 972
RseI CAYNNNNRTG 1 cut(s) 926
SaqAI TTAA 4 cut(s) 239, 477, 741, 900
Sau3AI GATC 4 cut(s) 97, 250, 682, 874
SchI GAGTC 1 cut(s) 558
ScrFI CCNGG 1 cut(s) 996
SduI GDGCHC 2 cut(s) 736, 1005
SetI ASST 9 cut(s) 54, 130, 143, 426, 486, 537, 777, 977, 997
SfaNI GCATC 4 cut(s) 102, 478, 546, 584
SfcI CTRYAG 1 cut(s) 321
SmiMI CAYNNNNRTG 1 cut(s) 926
Sse9I AATT 3 cut(s) 172, 738, 963
SsiI CCGC 5 cut(s) 57, 208, 405, 667, 719
SspI AATATT 1 cut(s) 946
SspMI CTAG 3 cut(s) 60, 309, 546
StyD4I CCNGG 1 cut(s) 994
TaaI ACNGT 2 cut(s) 215, 507
TaiI ACGT 3 cut(s) 54, 486, 977
TaqI TCGA 5 cut(s) 96, 148, 373, 486, 914
TasI AATT 3 cut(s) 172, 738, 963
TatI WGTACW 1 cut(s) 753
TauI GCSGC 4 cut(s) 59, 407, 670, 722
TfiI GAWTC 2 cut(s) 287, 658
Tru1I TTAA 4 cut(s) 239, 477, 741, 900
Tru9I TTAA 4 cut(s) 239, 477, 741, 900
TseFI GTSAC 2 cut(s) 388, 938
TseI GCWGC 7 cut(s) 20, 305, 417, 518, 620, 779, 830
Tsp45I GTSAC 2 cut(s) 388, 938
TspDTI ATGAA 2 cut(s) 90, 300
TspGWI ACGGA 2 cut(s) 544, 995
VspI ATTAAT 2 cut(s) 741, 900
XapI RAATTY 1 cut(s) 172
XceI RCATGY 3 cut(s) 200, 719, 931
XmnI GAANNNNTTC 2 cut(s) 657, 963
XspI CTAG 3 cut(s) 60, 309, 546
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.