Rh5CG208700

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000319
Physical Location & Seq
Forward (+)
21029018 .. 21031218
2201 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG208700.1

Sequence Viewer

Length: 1116 bp
ATGGATACGGCTCTGCATGTGGCTGTGCGGTACGGGACCAATGGTGTGACGGCTTTGCACGCCGCTGTAACTCGCAGCAACCTCACTAGCGAAGGCATTGTGAGGACTATGGTGTCCAAAAATCCTGAGATGATTAAAAATGTCGATGCACTTGGCTGGACACCGTTACACTATGCAGCATTTAGAGGGAACCTTGAAGCGACTAGAGTGCTAATGCAATGCGATAGTTCTGCATCCTACATCTTAGACAACTCTGGGATGTCAGCTCTCCATACGCCTAAGCTTGCGGCGATTATAAATGAAGCAGATAAAGATGGAAACACTCCTTTGCACTTGGCTGCCCTTCAGCAAAATGATAAAATCATAAAAGTTCTGTCTGGCGATCGGAGGGTGGACATGATTGCTATTAATAAGGAATTCTCGATGGCCACCGACATGTTTCTTGGTGACAATATTGGTGAACAGGAAACAACTCGCAGTGGTATGGTTTTGCACAACCAGGGGTGCTCTGTTGGCGTGCCATTTTTCCAACAACAAATCAGTCGTGACTTCGACAAATTGGAACCACTAGAGAAGGACACAGACAAGATCAGAGAAAACCAGCTGCAAGCTACTCCGGATGATCGTAATGCCTTAGAAAGAGATGACACCAAACTACTTGTTGCAACGCTCATTGCAACTGTCACGTTTGCAGCATCTTTCACCAGCGTGCCTGGAGGATTTAAAGACAACGGAATGCCTATTTTATATGACAAGGCCGCTTTCAAAGTGTTTCAGTTTTTCAATGCAGCGTCCTTCTACATCTCAATTCTTGCAATCTATAATGAAGCGACTCCGATTACTGTGTTATCCATCCATCTACCCACACCATCAAGTCTCATTCAGTATTCCATTGGAGGAATGGTGGCTGCATTTTTTTCCGGCACATTAGCAGTGCAGCCGAGACGTAGTCACGGAAATTTGTTTGAATTTATATTTGGTACAAATTCGGTTGATATTGTGCTCACCGTAATGTGTGGCATTTTTTTAATATTAGCTATCATCCCTGTGCTGAAGTCTCTGATTCAAATACGCAGGGGAAAGAGGATCCACTGGTTTCGAAACCGTGTAATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_4 Ank_5 PGG

Protein Analysis

371

Amino Acids

40.89

Weight (kDa)

7.13

Isoelectric Point (pI)

28.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 13 - 74 7.7e-09 Ankyrin repeats (3 copies)
Ank_2 PF12796 19 - 126 1.8e-11 Ankyrin repeats (3 copies)
Ank_4 PF13637 19 - 71 6.9e-06 Ankyrin repeats (many copies)
PGG PF13962 214 - 311 9.6e-18 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000319)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18590 FvH4_1g18590 FvH4_3g16140 FvH4_3g16141 FvH4_3g16160
malus_domestica MD02G1193600.v1.1 MD04G1020900.v1.1 MD04G1021000.v1.1 MD05G1212100.v1.1 MD05G1212300.v1.1 MD05G1213100.v1.1 MD05G1213400.v1.1 MD10G1197300.v1.1
prunus_persica Prupe.4G144500_v2.0.a1 Prupe.4G144600_v2.0.a1 Prupe.4G144800_v2.0.a1 Prupe.4G144900_v2.0.a1 Prupe.4G145100_v2.0.a1 Prupe.4G145300_v2.0.a1
pyrus_communis pycom02g15730 pycom02g15740 pycom05g19670 pycom05g19680 pycom10g17020 pycom11g27250
rosa_chinensis RchiOBHm_Chr2g0109301 RchiOBHm_Chr2g0109321 RchiOBHm_Chr2g0109341 RchiOBHm_Chr2g0109381 RchiOBHm_Chr3g0482301 RchiOBHm_Chr5g0027111 RchiOBHm_Chr5g0027121 RchiOBHm_Chr5g0027141 RchiOBHm_Chr5g0027181 RchiOBHm_Chr5g0027241
rosa_laevigata RLG00000017731 RLG00000017732 RLG00000032990 RLG00000032992 RLG00000032993 RLG00000032995 RLG00000032997 RLG00000033002
rosa_multiflora Rmu_sc0000135.1_g000002 Rmu_sc0000332.1_g000010 Rmu_sc0000882.1_g000028 Rmu_sc0000882.1_g000032 Rmu_sc0000882.1_g000033 Rmu_sc0000882.1_g000039 Rmu_sc0000882.1_g000043 Rmu_sc0000882.1_g000046 Rmu_sc0006065.1_g000003 Rmu_sc0006065.1_g000012 Rmu_sc0006065.1_g000018 Rmu_sc0006065.1_g000019 Rmu_sc0006065.1_g000022 Rmu_sc0007497.1_g000002 Rmu_sc0013610.1_g000011 Rmu_sc0015338.1_g000006 Rmu_ssc0000357.1_g000035
rosa_roxburghii Rroxscaffold_1G00052250 Rroxscaffold_1G00052280 Rroxscaffold_1G00052290 Rroxscaffold_1G00052310 Rroxscaffold_1G00052330 Rroxscaffold_1G00052360 Rroxscaffold_1G00052380 Rroxscaffold_1G00052390 Rroxscaffold_2G00134310 Rroxscaffold_2G00134330
rosa_rugosa Rorug02G0159400 Rorug05G0097300 Rorug05G0097500 Rorug05G0097600 Rorug05G0097700 Rorug05G0097700 Rorug05G0097700 Rorug05G0122900
rosa_samantha Rh2AG210900 Rh2AG211200 Rh2AG211500 Rh2BG221200 Rh2BG221800 Rh2CG213100 Rh2CG213200 Rh2CG213600 Rh3CG277900 Rh3CG278000 Rh3CG278600 Rh3DG274600 Rh5BG188600 Rh5BG188700 Rh5BG188900 Rh5BG189100 Rh5BG189200 Rh5BG189400 Rh5CG208400 Rh5CG208500 Rh5CG208700 Rh5CG209000 Rh5CG209100 Rh5CG209400 Rh5CG209700 Rh5CG209800 Rh5CG209900 Rh5CG210000 Rh5DG190500 Rh5DG190700 Rh5DG191200 Rh5DG191500
rosa_wichuraiana Rw3G022160 Rw5G017410 Rw5G017420 Rw5G017450 Rw5G017460 Rw5G017470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 296
AasI GACNNNNNNGTC 1 cut(s) 112
AccIII TCCGGA 1 cut(s) 616
AciI CCGC 4 cut(s) 28, 63, 287, 759
AclWI GGATC 2 cut(s) 1081, 1094
AcoI YGGCCR 1 cut(s) 426
AcsI RAATTY 4 cut(s) 416, 958, 968, 985
AcuI CTGAAG 2 cut(s) 329, 1073
AfaI GTAC 2 cut(s) 32, 982
AflIII ACRYGT 1 cut(s) 435
AgsI TTSAA 5 cut(s) 197, 766, 784, 968, 1067
AjnI CCWGG 2 cut(s) 498, 712
AjuI GAANNNNNNNTTGG 2 cut(s) 960, 992
AleI CACNNNNGTG 1 cut(s) 707
AluBI AGCT 5 cut(s) 266, 283, 604, 611, 1037
AluI AGCT 5 cut(s) 266, 283, 604, 611, 1037
Alw21I GWGCWC 2 cut(s) 509, 1005
Alw26I GTCTC 3 cut(s) 881, 937, 1062
AlwI GGATC 2 cut(s) 1081, 1094
Aor13HI TCCGGA 1 cut(s) 616
AoxI GGCC 2 cut(s) 426, 756
ApeKI GCWGC 8 cut(s) 75, 176, 338, 604, 692, 788, 908, 937
ApoI RAATTY 4 cut(s) 416, 958, 968, 985
AseI ATTAAT 1 cut(s) 408
AspS9I GGNCC 1 cut(s) 36
AsuHPI GGTGA 4 cut(s) 458, 470, 694, 997
AsuII TTCGAA 1 cut(s) 1099
AvaII GGWCC 1 cut(s) 36
BalI TGGCCA 1 cut(s) 428
BamHI GGATCC 1 cut(s) 1086
Bbv12I GWGCWC 2 cut(s) 509, 1005
BbvI GCAGC 8 cut(s) 87, 188, 325, 591, 704, 800, 895, 949
BccI CCATC 5 cut(s) 308, 418, 860, 864, 877
BceAI ACGGC 2 cut(s) 24, 66
BcgI CGANNNNNNTGC 4 cut(s) 190, 212, 224, 246
BciT130I CCWGG 2 cut(s) 500, 714
BcoDI GTCTC 3 cut(s) 881, 937, 1062
BfaI CTAG 3 cut(s) 87, 204, 569
Bme1390I CCNGG 2 cut(s) 500, 714
Bme18I GGWCC 1 cut(s) 36
BmgT120I GGNCC 1 cut(s) 36
BmiI GGNNCC 4 cut(s) 37, 191, 564, 1088
BmrFI CCNGG 2 cut(s) 500, 714
BmsI GCATC 3 cut(s) 136, 242, 704
BpmI CTGGAG 1 cut(s) 735
Bpu10I CCTNAGC 1 cut(s) 279
Bpu14I TTCGAA 1 cut(s) 1099
BsaJI CCNNGG 1 cut(s) 499
BsaWI WCCGGW 1 cut(s) 616
BsaXI ACNNNNNCTCC 2 cut(s) 888, 918
Bse1I ACTGG 1 cut(s) 1097
Bse3DI GCAATG 2 cut(s) 224, 672
BseAI TCCGGA 1 cut(s) 616
BseBI CCWGG 2 cut(s) 500, 714
BseDI CCNNGG 1 cut(s) 499
BseGI GGATG 5 cut(s) 233, 264, 625, 852, 1041
BseMI GCAATG 2 cut(s) 224, 672
BseMII CTCAG 1 cut(s) 117
BseNI ACTGG 1 cut(s) 1097
BseXI GCAGC 8 cut(s) 87, 188, 325, 591, 704, 800, 895, 949
BsgI GTGCAG 1 cut(s) 956
Bsh1285I CGRYCG 1 cut(s) 385
BshFI GGCC 2 cut(s) 428, 758
BsiEI CGRYCG 1 cut(s) 385
BsiHKAI GWGCWC 2 cut(s) 509, 1005
BsiSI CCGG 2 cut(s) 617, 921
BslFI GGGAC 1 cut(s) 49
BsmAI GTCTC 3 cut(s) 881, 937, 1062
BsmBI CGTCTC 1 cut(s) 937
BsmFI GGGAC 1 cut(s) 49
BsmI GAATGC 1 cut(s) 741
BsnI GGCC 2 cut(s) 428, 758
Bsp119I TTCGAA 1 cut(s) 1099
Bsp1286I GDGCHC 2 cut(s) 509, 1005
Bsp13I TCCGGA 1 cut(s) 616
Bsp143I GATC 4 cut(s) 382, 588, 622, 1086
BspACI CCGC 4 cut(s) 28, 63, 287, 759
BspANI GGCC 2 cut(s) 428, 758
BspCNI CTCAG 1 cut(s) 118
BspEI TCCGGA 1 cut(s) 616
BspLI GGNNCC 4 cut(s) 37, 191, 564, 1088
BspPI GGATC 2 cut(s) 1081, 1094
BspT104I TTCGAA 1 cut(s) 1099
BsrDI GCAATG 2 cut(s) 224, 672
BsrI ACTGG 1 cut(s) 1097
BssECI CCNNGG 1 cut(s) 499
BssMI GATC 4 cut(s) 382, 588, 622, 1086
Bst2UI CCWGG 2 cut(s) 500, 714
Bst4CI ACNGT 5 cut(s) 165, 682, 844, 1009, 1106
BstBI TTCGAA 1 cut(s) 1099
BstC8I GCNNGC 5 cut(s) 60, 285, 518, 609, 710
BstDEI CTNAG 4 cut(s) 126, 244, 279, 634
BstF5I GGATG 5 cut(s) 233, 264, 625, 852, 1041
BstKTI GATC 4 cut(s) 385, 591, 625, 1089
BstMAI GTCTC 3 cut(s) 881, 937, 1062
BstMBI GATC 4 cut(s) 382, 588, 622, 1086
BstMCI CGRYCG 1 cut(s) 385
BstMWI GCNNNNNNNGC 2 cut(s) 59, 513
BstNI CCWGG 2 cut(s) 500, 714
BstNSI RCATGY 2 cut(s) 20, 439
BstSCI CCNGG 2 cut(s) 498, 712
BstV1I GCAGC 8 cut(s) 87, 188, 325, 591, 704, 800, 895, 949
BstX2I RGATCY 1 cut(s) 1086
BstYI RGATCY 1 cut(s) 1086
BsuRI GGCC 2 cut(s) 428, 758
BtsCI GGATG 5 cut(s) 233, 264, 625, 852, 1041
BtsI GCAGTG 2 cut(s) 484, 939
BtsIMutI CAGTG 3 cut(s) 484, 939, 1090
Cac8I GCNNGC 5 cut(s) 60, 285, 518, 609, 710
Cfr13I GGNCC 1 cut(s) 36
CseI GACGC 1 cut(s) 780
Csp6I GTAC 2 cut(s) 31, 981
CviAII CATG 3 cut(s) 17, 397, 436
CviQI GTAC 2 cut(s) 31, 981
DdeI CTNAG 4 cut(s) 126, 244, 279, 634
DpnI GATC 4 cut(s) 384, 590, 624, 1088
DpnII GATC 4 cut(s) 382, 588, 622, 1086
DraI TTTAAA 1 cut(s) 724
DrdI GACNNNNNNGTC 1 cut(s) 112
DseDI GACNNNNNNGTC 1 cut(s) 112
EaeI YGGCCR 1 cut(s) 426
Eco47I GGWCC 1 cut(s) 36
Eco57I CTGAAG 2 cut(s) 329, 1073
EcoRI GAATTC 1 cut(s) 416
EcoRII CCWGG 2 cut(s) 498, 712
Esp3I CGTCTC 1 cut(s) 937
FaeI CATG 3 cut(s) 20, 400, 439
FaqI GGGAC 1 cut(s) 49
FatI CATG 3 cut(s) 16, 396, 435
FokI GGATG 5 cut(s) 220, 271, 632, 839, 1028
FspBI CTAG 3 cut(s) 87, 204, 569
GsuI CTGGAG 1 cut(s) 735
HaeIII GGCC 2 cut(s) 428, 758
HapII CCGG 2 cut(s) 617, 921
HgaI GACGC 1 cut(s) 780
Hin1II CATG 3 cut(s) 20, 400, 439
HindIII AAGCTT 1 cut(s) 281
HinfI GANTC 2 cut(s) 832, 1063
HpaII CCGG 2 cut(s) 617, 921
HphI GGTGA 4 cut(s) 458, 470, 694, 997
Hpy166II GTNNAC 2 cut(s) 394, 461
Hpy188I TCNGA 4 cut(s) 387, 593, 837, 1062
Hpy188III TCNNGA 4 cut(s) 125, 421, 545, 617
Hpy8I GTNNAC 2 cut(s) 394, 461
HpyAV CCTTC 4 cut(s) 86, 353, 568, 805
HpyCH4III ACNGT 5 cut(s) 165, 682, 844, 1009, 1106
HpyCH4IV ACGT 2 cut(s) 686, 946
HpyF10VI GCNNNNNNNGC 2 cut(s) 59, 513
HpyF3I CTNAG 4 cut(s) 126, 244, 279, 634
HpySE526I ACGT 2 cut(s) 686, 946
Hsp92II CATG 3 cut(s) 20, 400, 439
Kpn2I TCCGGA 1 cut(s) 616
Kzo9I GATC 4 cut(s) 382, 588, 622, 1086
Lsp1109I GCAGC 8 cut(s) 87, 188, 325, 591, 704, 800, 895, 949
LweI GCATC 3 cut(s) 136, 242, 704
MaeI CTAG 3 cut(s) 87, 204, 569
MaeII ACGT 2 cut(s) 686, 946
MaeIII GTNAC 7 cut(s) 46, 67, 165, 446, 545, 682, 950
MalI GATC 4 cut(s) 384, 590, 624, 1088
MboI GATC 4 cut(s) 382, 588, 622, 1086
MflI RGATCY 1 cut(s) 1086
MhlI GDGCHC 2 cut(s) 509, 1005
MlsI TGGCCA 1 cut(s) 428
MluCI AATT 7 cut(s) 416, 557, 807, 958, 968, 985, 1110
MluNI TGGCCA 1 cut(s) 428
MlyI GAGTC 1 cut(s) 826
MmeI TCCRAC 1 cut(s) 553
MnlI CCTC 7 cut(s) 92, 96, 179, 381, 710, 890, 1077
Mox20I TGGCCA 1 cut(s) 428
MroI TCCGGA 1 cut(s) 616
MscI TGGCCA 1 cut(s) 428
MseI TTAA 5 cut(s) 135, 408, 723, 1028, 1114
MslI CAYNNNNRTG 4 cut(s) 434, 707, 1010, 1046
Msp20I TGGCCA 1 cut(s) 428
MspA1I CMGCKG 2 cut(s) 65, 604
MspI CCGG 2 cut(s) 617, 921
MspR9I CCNGG 2 cut(s) 500, 714
Mva1269I GAATGC 1 cut(s) 741
MvaI CCWGG 2 cut(s) 500, 714
MwoI GCNNNNNNNGC 2 cut(s) 59, 513
NdeII GATC 4 cut(s) 382, 588, 622, 1086
NlaIII CATG 3 cut(s) 20, 400, 439
NlaIV GGNNCC 4 cut(s) 37, 191, 564, 1088
NmeAIII GCCGAG 1 cut(s) 966
NmuCI GTSAC 5 cut(s) 46, 446, 545, 682, 950
NspI RCATGY 2 cut(s) 20, 439
NspV TTCGAA 1 cut(s) 1099
OliI CACNNNNGTG 1 cut(s) 707
PciI ACATGT 1 cut(s) 435
PctI GAATGC 1 cut(s) 741
PfeI GAWTC 1 cut(s) 1063
PflFI GACNNNGTC 1 cut(s) 948
Ple19I CGATCG 1 cut(s) 385
PleI GAGTC 1 cut(s) 826
PpsI GAGTC 1 cut(s) 826
PscI ACATGT 1 cut(s) 435
PshBI ATTAAT 1 cut(s) 408
PsiI TTATAA 1 cut(s) 296
Psp6I CCWGG 2 cut(s) 498, 712
PspGI CCWGG 2 cut(s) 498, 712
PspN4I GGNNCC 4 cut(s) 37, 191, 564, 1088
PspPI GGNCC 1 cut(s) 36
PsuI RGATCY 1 cut(s) 1086
PsyI GACNNNGTC 1 cut(s) 948
PvuI CGATCG 1 cut(s) 385
PvuII CAGCTG 1 cut(s) 604
RsaI GTAC 2 cut(s) 32, 982
RsaNI GTAC 2 cut(s) 31, 981
RseI CAYNNNNRTG 4 cut(s) 434, 707, 1010, 1046
SaqAI TTAA 5 cut(s) 135, 408, 723, 1028, 1114
Sau3AI GATC 4 cut(s) 382, 588, 622, 1086
Sau96I GGNCC 1 cut(s) 36
SchI GAGTC 1 cut(s) 826
ScrFI CCNGG 2 cut(s) 500, 714
SduI GDGCHC 2 cut(s) 509, 1005
SetI ASST 9 cut(s) 84, 195, 268, 285, 606, 613, 689, 949, 1039
SfaNI GCATC 3 cut(s) 136, 242, 704
SfuI TTCGAA 1 cut(s) 1099
SinI GGWCC 1 cut(s) 36
SmiMI CAYNNNNRTG 4 cut(s) 434, 707, 1010, 1046
Sse9I AATT 7 cut(s) 416, 557, 807, 958, 968, 985, 1110
SsiI CCGC 4 cut(s) 28, 63, 287, 759
SspI AATATT 2 cut(s) 454, 1032
SspMI CTAG 3 cut(s) 87, 204, 569
StyD4I CCNGG 2 cut(s) 498, 712
TaaI ACNGT 5 cut(s) 165, 682, 844, 1009, 1106
TaiI ACGT 2 cut(s) 689, 949
TaqI TCGA 4 cut(s) 144, 422, 552, 1099
TasI AATT 7 cut(s) 416, 557, 807, 958, 968, 985, 1110
TauI GCSGC 3 cut(s) 65, 290, 761
TfiI GAWTC 1 cut(s) 1063
Tru1I TTAA 5 cut(s) 135, 408, 723, 1028, 1114
Tru9I TTAA 5 cut(s) 135, 408, 723, 1028, 1114
TscAI CASTG 3 cut(s) 484, 939, 1097
TseFI GTSAC 5 cut(s) 46, 446, 545, 682, 950
TseI GCWGC 8 cut(s) 75, 176, 338, 604, 692, 788, 908, 937
Tsp45I GTSAC 5 cut(s) 46, 446, 545, 682, 950
TspDTI ATGAA 2 cut(s) 315, 840
TspGWI ACGGA 2 cut(s) 747, 969
TspRI CASTG 3 cut(s) 484, 939, 1097
Tth111I GACNNNGTC 1 cut(s) 948
VpaK11BI GGWCC 1 cut(s) 36
VspI ATTAAT 1 cut(s) 408
XapI RAATTY 4 cut(s) 416, 958, 968, 985
XceI RCATGY 2 cut(s) 20, 439
XcmI CCANNNNNNNNNTGG 1 cut(s) 898
XspI CTAG 3 cut(s) 87, 204, 569
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.