Rmu_sc0006065.1_g000012

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006065.1
OG0000319
Physical Location & Seq
Reverse (-)
57075 .. 59110
2036 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006065.1_g000012.1.cds

Sequence Viewer

Length: 1194 bp
atgattaaaaacgtcgatgcacttggctggacaccgttacactatgcagcatttagagggaaccttgaagcgactagagtgctaatgcaatgtgatagttctgcatcttacatcttagacaactctggaatgtcagctctccatgtagcatcccatgcgggccacaccaagataatgaaagaactaattcggtggcggcctgatatttgtgatctgctgaatgacaaaggccaaacggctttacatgtggcagtattaggagcacgaattaatgttgtggagtacatattgaagacgcctaagcttgcagcgattataaacgaagcagataaagatggcaacactcctttgcacttggctgcccttcagcaaaatgataaaatcatcagagttctgtcaggcaatcgtagagtggacaggattgctattaacaatgatttcttgaagcccattgacatgtttcttggtgaaaatattggtgaacaggaaacaattcgcagtggtatgattttgcacaacctggggcgctccgttggggtgccatttttccaacaaaaaatctgtcgtgacttcgacaaattggaaccaccggacaagcatacagacaagacaagagaaaacaaacagcaagctcctcgcgatgataatgccttgaaaagaaatgacaccaaactacttgtagcaacgctgattgcaaccatcacatttgcagcttctttcaccaatgtgcctggaggatttaaagacaacggaatgcctgttttatatgacaaggcgtctttcaaagtgtttcagttcttcaatgcagtgtccttctacatctcaattcttgcaatttataacgaatcaactccgataactatgttatccatccatctacccactccatcaattctcattcagtattcaattggaggaatggtggttgcatttttttcgggcacgttagcggtgcagccgagaaagattagcgctttctctctccggtgcggcatcgaactccggatcatgcctaaagctctctctctttggtgcggcggtgcggcgtcgaactccggatcacgcctgaagctctctctctccaccggcgaggcgtcgaactccagatcttacatgaagatctcttttcacctcctgtgcggtgtcgaactccggaatcactctgaagctccagtcggagctaccggagtttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_4 Ank_5 PGG

Protein Analysis

397

Amino Acids

43.67

Weight (kDa)

9.21

Isoelectric Point (pI)

34.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000319)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18590 FvH4_1g18590 FvH4_3g16140 FvH4_3g16141 FvH4_3g16160
malus_domestica MD02G1193600.v1.1 MD04G1020900.v1.1 MD04G1021000.v1.1 MD05G1212100.v1.1 MD05G1212300.v1.1 MD05G1213100.v1.1 MD05G1213400.v1.1 MD10G1197300.v1.1
prunus_persica Prupe.4G144500_v2.0.a1 Prupe.4G144600_v2.0.a1 Prupe.4G144800_v2.0.a1 Prupe.4G144900_v2.0.a1 Prupe.4G145100_v2.0.a1 Prupe.4G145300_v2.0.a1
pyrus_communis pycom02g15730 pycom02g15740 pycom05g19670 pycom05g19680 pycom10g17020 pycom11g27250
rosa_chinensis RchiOBHm_Chr2g0109301 RchiOBHm_Chr2g0109321 RchiOBHm_Chr2g0109341 RchiOBHm_Chr2g0109381 RchiOBHm_Chr3g0482301 RchiOBHm_Chr5g0027111 RchiOBHm_Chr5g0027121 RchiOBHm_Chr5g0027141 RchiOBHm_Chr5g0027181 RchiOBHm_Chr5g0027241
rosa_laevigata RLG00000017731 RLG00000017732 RLG00000032990 RLG00000032992 RLG00000032993 RLG00000032995 RLG00000032997 RLG00000033002
rosa_multiflora Rmu_sc0000135.1_g000002 Rmu_sc0000332.1_g000010 Rmu_sc0000882.1_g000028 Rmu_sc0000882.1_g000032 Rmu_sc0000882.1_g000033 Rmu_sc0000882.1_g000039 Rmu_sc0000882.1_g000043 Rmu_sc0000882.1_g000046 Rmu_sc0006065.1_g000003 Rmu_sc0006065.1_g000012 Rmu_sc0006065.1_g000018 Rmu_sc0006065.1_g000019 Rmu_sc0006065.1_g000022 Rmu_sc0007497.1_g000002 Rmu_sc0013610.1_g000011 Rmu_sc0015338.1_g000006 Rmu_ssc0000357.1_g000035
rosa_roxburghii Rroxscaffold_1G00052250 Rroxscaffold_1G00052280 Rroxscaffold_1G00052290 Rroxscaffold_1G00052310 Rroxscaffold_1G00052330 Rroxscaffold_1G00052360 Rroxscaffold_1G00052380 Rroxscaffold_1G00052390 Rroxscaffold_2G00134310 Rroxscaffold_2G00134330
rosa_rugosa Rorug02G0159400 Rorug05G0097300 Rorug05G0097500 Rorug05G0097600 Rorug05G0097700 Rorug05G0097700 Rorug05G0097700 Rorug05G0122900
rosa_samantha Rh2AG210900 Rh2AG211200 Rh2AG211500 Rh2BG221200 Rh2BG221800 Rh2CG213100 Rh2CG213200 Rh2CG213600 Rh3CG277900 Rh3CG278000 Rh3CG278600 Rh3DG274600 Rh5BG188600 Rh5BG188700 Rh5BG188900 Rh5BG189100 Rh5BG189200 Rh5BG189400 Rh5CG208400 Rh5CG208500 Rh5CG208700 Rh5CG209000 Rh5CG209100 Rh5CG209400 Rh5CG209700 Rh5CG209800 Rh5CG209900 Rh5CG210000 Rh5DG190500 Rh5DG190700 Rh5DG191200 Rh5DG191500
rosa_wichuraiana Rw3G022160 Rw5G017410 Rw5G017420 Rw5G017450 Rw5G017460 Rw5G017470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 317, 840
AccB1I GGYRCC 1 cut(s) 538
AccII CGCG 1 cut(s) 639
AccIII TCCGGA 3 cut(s) 1002, 1055, 1152
AciI CCGC 8 cut(s) 158, 196, 950, 990, 1035, 1038, 1043, 1140
AclWI GGATC 2 cut(s) 1013, 1066
AcuI CTGAAG 3 cut(s) 350, 1088, 1185
AcyI GRCGYC 4 cut(s) 296, 776, 1046, 1094
AfaI GTAC 1 cut(s) 284
AfeI AGCGCT 1 cut(s) 973
AflIII ACRYGT 2 cut(s) 244, 456
AgsI TTSAA 7 cut(s) 68, 292, 445, 655, 784, 802, 909
AhdI GACNNNNNGTC 1 cut(s) 775
AjnI CCWGG 2 cut(s) 519, 730
AleI CACNNNNGTG 1 cut(s) 725
AluBI AGCT 8 cut(s) 137, 304, 632, 713, 1019, 1072, 1169, 1181
AluI AGCT 8 cut(s) 137, 304, 632, 713, 1019, 1072, 1169, 1181
Alw21I GWGCWC 1 cut(s) 265
AlwI GGATC 2 cut(s) 1013, 1066
Aor13HI TCCGGA 3 cut(s) 1002, 1055, 1152
Aor51HI AGCGCT 1 cut(s) 973
AoxI GGCC 3 cut(s) 160, 197, 229
ApeKI GCWGC 5 cut(s) 47, 308, 359, 710, 955
ArsI GACNNNNNNTTYG 2 cut(s) 547, 579
AseI ATTAAT 1 cut(s) 270
Asp700I GAANNNNTTC 2 cut(s) 186, 492
AspLEI GCGC 2 cut(s) 528, 974
AspS9I GGNCC 1 cut(s) 160
AsuHPI GGTGA 4 cut(s) 479, 491, 712, 1121
BaeGI GKGCMC 1 cut(s) 944
BanI GGYRCC 1 cut(s) 538
BbsI GAAGAC 1 cut(s) 299
Bbv12I GWGCWC 1 cut(s) 265
BbvI GCAGC 5 cut(s) 59, 320, 346, 722, 967
BccI CCATC 5 cut(s) 329, 707, 878, 882, 895
BceAI ACGGC 1 cut(s) 252
BcgI CGANNNNNNTGC 8 cut(s) 61, 95, 617, 629, 651, 663, 918, 952
BciT130I CCWGG 2 cut(s) 521, 732
BfaI CTAG 1 cut(s) 75
BfoI RGCGCY 2 cut(s) 529, 975
BglII AGATCT 2 cut(s) 1106, 1119
BisI GCNGC 9 cut(s) 48, 197, 309, 360, 711, 956, 991, 1036, 1044
BlsI GCNGC 9 cut(s) 49, 198, 310, 361, 712, 957, 992, 1037, 1045
Bme1390I CCNGG 2 cut(s) 521, 732
BmeRI GACNNNNNGTC 1 cut(s) 775
BmgT120I GGNCC 1 cut(s) 160
BmiI GGNNCC 3 cut(s) 62, 540, 585
BmrFI CCNGG 2 cut(s) 521, 732
BmsI GCATC 4 cut(s) 7, 113, 158, 1002
BpiI GAAGAC 1 cut(s) 299
BpmI CTGGAG 3 cut(s) 753, 1087, 1155
Bpu10I CCTNAGC 1 cut(s) 300
BsaHI GRCGYC 4 cut(s) 296, 776, 1046, 1094
BsaJI CCNNGG 1 cut(s) 520
BsaWI WCCGGW 6 cut(s) 589, 984, 1002, 1055, 1152, 1184
BsaXI ACNNNNNCTCC 2 cut(s) 906, 936
Bse118I RCCGGY 1 cut(s) 1085
Bse1I ACTGG 1 cut(s) 1172
Bse3DI GCAATG 1 cut(s) 95
BseAI TCCGGA 3 cut(s) 1002, 1055, 1152
BseBI CCWGG 2 cut(s) 521, 732
BseDI CCNNGG 1 cut(s) 520
BseGI GGATG 2 cut(s) 149, 870
BseMI GCAATG 1 cut(s) 95
BseNI ACTGG 1 cut(s) 1172
BseRI GAGGAG 1 cut(s) 624
BseSI GKGCMC 1 cut(s) 944
BseXI GCAGC 5 cut(s) 59, 320, 346, 722, 967
BsgI GTGCAG 1 cut(s) 974
Bsh1236I CGCG 1 cut(s) 639
BshFI GGCC 3 cut(s) 162, 199, 231
BshNI GGYRCC 1 cut(s) 538
BsiHKAI GWGCWC 1 cut(s) 265
BsiSI CCGG 7 cut(s) 590, 985, 1003, 1056, 1086, 1153, 1185
BsmI GAATGC 1 cut(s) 759
BsnI GGCC 3 cut(s) 162, 199, 231
Bsp1286I GDGCHC 2 cut(s) 265, 944
Bsp13I TCCGGA 3 cut(s) 1002, 1055, 1152
Bsp143I GATC 5 cut(s) 211, 1005, 1058, 1106, 1119
Bsp68I TCGCGA 1 cut(s) 639
BspACI CCGC 8 cut(s) 158, 196, 950, 990, 1035, 1038, 1043, 1140
BspANI GGCC 3 cut(s) 162, 199, 231
BspEI TCCGGA 3 cut(s) 1002, 1055, 1152
BspFNI CGCG 1 cut(s) 639
BspLI GGNNCC 3 cut(s) 62, 540, 585
BspPI GGATC 2 cut(s) 1013, 1066
BspT107I GGYRCC 1 cut(s) 538
BsrDI GCAATG 1 cut(s) 95
BsrFI RCCGGY 1 cut(s) 1085
BsrI ACTGG 1 cut(s) 1172
BssAI RCCGGY 1 cut(s) 1085
BssECI CCNNGG 1 cut(s) 520
BssMI GATC 5 cut(s) 211, 1005, 1058, 1106, 1119
BssNI GRCGYC 4 cut(s) 296, 776, 1046, 1094
Bst2UI CCWGG 2 cut(s) 521, 732
Bst4CI ACNGT 1 cut(s) 36
BstACI GRCGYC 4 cut(s) 296, 776, 1046, 1094
BstAPI GCANNNNNTGC 1 cut(s) 155
BstC8I GCNNGC 3 cut(s) 160, 306, 630
BstDEI CTNAG 2 cut(s) 115, 300
BstF5I GGATG 2 cut(s) 149, 870
BstFNI CGCG 1 cut(s) 639
BstH2I RGCGCY 2 cut(s) 529, 975
BstHHI GCGC 2 cut(s) 528, 974
BstKTI GATC 5 cut(s) 214, 1008, 1061, 1109, 1122
BstMBI GATC 5 cut(s) 211, 1005, 1058, 1106, 1119
BstMWI GCNNNNNNNGC 1 cut(s) 155
BstNI CCWGG 2 cut(s) 521, 732
BstNSI RCATGY 2 cut(s) 248, 460
BstSCI CCNGG 2 cut(s) 519, 730
BstSLI GKGCMC 1 cut(s) 944
BstUI CGCG 1 cut(s) 639
BstV1I GCAGC 5 cut(s) 59, 320, 346, 722, 967
BstV2I GAAGAC 1 cut(s) 299
BstX2I RGATCY 2 cut(s) 1106, 1119
BstYI RGATCY 2 cut(s) 1106, 1119
BsuRI GGCC 3 cut(s) 162, 199, 231
BtgZI GCGATG 1 cut(s) 654
BtsCI GGATG 2 cut(s) 149, 870
BtsI GCAGTG 2 cut(s) 505, 813
BtsIMutI CAGTG 2 cut(s) 505, 813
BtuMI TCGCGA 1 cut(s) 639
Cac8I GCNNGC 3 cut(s) 160, 306, 630
CfoI GCGC 2 cut(s) 528, 974
Cfr10I RCCGGY 1 cut(s) 1085
Cfr13I GGNCC 1 cut(s) 160
CseI GACGC 4 cut(s) 304, 765, 1035, 1083
Csp6I GTAC 1 cut(s) 283
CviAII CATG 6 cut(s) 143, 155, 245, 457, 1009, 1114
CviQI GTAC 1 cut(s) 283
DdeI CTNAG 2 cut(s) 115, 300
DpnI GATC 5 cut(s) 213, 1007, 1060, 1108, 1121
DpnII GATC 5 cut(s) 211, 1005, 1058, 1106, 1119
DraI TTTAAA 1 cut(s) 742
DriI GACNNNNNGTC 1 cut(s) 775
Eam1105I GACNNNNNGTC 1 cut(s) 775
Eco47III AGCGCT 1 cut(s) 973
Eco57I CTGAAG 3 cut(s) 350, 1088, 1185
EcoRII CCWGG 2 cut(s) 519, 730
FaeI CATG 6 cut(s) 146, 158, 248, 460, 1012, 1117
FatI CATG 6 cut(s) 142, 154, 244, 456, 1008, 1113
FauI CCCGC 1 cut(s) 151
Fnu4HI GCNGC 9 cut(s) 48, 197, 309, 360, 711, 956, 991, 1036, 1044
FokI GGATG 2 cut(s) 136, 857
Fsp4HI GCNGC 9 cut(s) 48, 197, 309, 360, 711, 956, 991, 1036, 1044
FspBI CTAG 1 cut(s) 75
GlaI GCGC 2 cut(s) 527, 973
GluI GCNGC 9 cut(s) 48, 197, 309, 360, 711, 956, 991, 1036, 1044
GsuI CTGGAG 3 cut(s) 753, 1087, 1155
HaeII RGCGCY 2 cut(s) 529, 975
HaeIII GGCC 3 cut(s) 162, 199, 231
HapII CCGG 7 cut(s) 590, 985, 1003, 1056, 1086, 1153, 1185
HgaI GACGC 4 cut(s) 304, 765, 1035, 1083
HhaI GCGC 2 cut(s) 528, 974
Hin1I GRCGYC 4 cut(s) 296, 776, 1046, 1094
Hin1II CATG 6 cut(s) 146, 158, 248, 460, 1012, 1117
Hin6I GCGC 2 cut(s) 526, 972
HinP1I GCGC 2 cut(s) 526, 972
HindIII AAGCTT 1 cut(s) 302
HinfI GANTC 2 cut(s) 845, 1156
HpaII CCGG 7 cut(s) 590, 985, 1003, 1056, 1086, 1153, 1185
HphI GGTGA 4 cut(s) 479, 491, 712, 1121
Hpy166II GTNNAC 2 cut(s) 415, 482
Hpy188I TCNGA 4 cut(s) 389, 855, 1165, 1178
Hpy188III TCNNGA 8 cut(s) 126, 442, 566, 638, 1003, 1056, 1104, 1153
Hpy8I GTNNAC 2 cut(s) 415, 482
Hpy99I CGWCG 3 cut(s) 17, 1051, 1099
HpyAV CCTTC 2 cut(s) 374, 823
HpyCH4III ACNGT 1 cut(s) 36
HpyCH4IV ACGT 2 cut(s) 12, 944
HpyF10VI GCNNNNNNNGC 1 cut(s) 155
HpyF3I CTNAG 2 cut(s) 115, 300
HpySE526I ACGT 2 cut(s) 12, 944
Hsp92I GRCGYC 4 cut(s) 296, 776, 1046, 1094
Hsp92II CATG 6 cut(s) 146, 158, 248, 460, 1012, 1117
HspAI GCGC 2 cut(s) 526, 972
Kpn2I TCCGGA 3 cut(s) 1002, 1055, 1152
Kzo9I GATC 5 cut(s) 211, 1005, 1058, 1106, 1119
LmnI GCTCC 5 cut(s) 260, 533, 637, 1174, 1178
Lsp1109I GCAGC 5 cut(s) 59, 320, 346, 722, 967
LweI GCATC 4 cut(s) 7, 113, 158, 1002
MaeI CTAG 1 cut(s) 75
MaeII ACGT 2 cut(s) 12, 944
MaeIII GTNAC 2 cut(s) 36, 566
MalI GATC 5 cut(s) 213, 1007, 1060, 1108, 1121
MboI GATC 5 cut(s) 211, 1005, 1058, 1106, 1119
MboII GAAGA 3 cut(s) 304, 790, 1129
MfeI CAATTG 1 cut(s) 909
MflI RGATCY 2 cut(s) 1106, 1119
MhlI GDGCHC 2 cut(s) 265, 944
MluCI AATT 8 cut(s) 186, 267, 492, 578, 825, 834, 891, 909
MmeI TCCRAC 2 cut(s) 574, 1156
MnlI CCTC 6 cut(s) 50, 645, 728, 908, 1084, 1142
MroI TCCGGA 3 cut(s) 1002, 1055, 1152
MroXI GAANNNNTTC 2 cut(s) 186, 492
MseI TTAA 5 cut(s) 6, 270, 429, 741, 1192
MslI CAYNNNNRTG 2 cut(s) 455, 725
MspI CCGG 7 cut(s) 590, 985, 1003, 1056, 1086, 1153, 1185
MspR9I CCNGG 2 cut(s) 521, 732
MunI CAATTG 1 cut(s) 909
Mva1269I GAATGC 1 cut(s) 759
MvaI CCWGG 2 cut(s) 521, 732
MvnI CGCG 1 cut(s) 639
MwoI GCNNNNNNNGC 1 cut(s) 155
NdeII GATC 5 cut(s) 211, 1005, 1058, 1106, 1119
NlaIII CATG 6 cut(s) 146, 158, 248, 460, 1012, 1117
NlaIV GGNNCC 3 cut(s) 62, 540, 585
NmeAIII GCCGAG 1 cut(s) 984
NmuCI GTSAC 1 cut(s) 566
NruI TCGCGA 1 cut(s) 639
NspI RCATGY 2 cut(s) 248, 460
OliI CACNNNNGTG 1 cut(s) 725
PciI ACATGT 2 cut(s) 244, 456
PctI GAATGC 1 cut(s) 759
PdmI GAANNNNTTC 2 cut(s) 186, 492
PfeI GAWTC 2 cut(s) 845, 1156
PkrI GCNGC 9 cut(s) 49, 198, 310, 361, 712, 957, 992, 1037, 1045
PscI ACATGT 2 cut(s) 244, 456
PshBI ATTAAT 1 cut(s) 270
PsiI TTATAA 2 cut(s) 317, 840
Psp6I CCWGG 2 cut(s) 519, 730
PspGI CCWGG 2 cut(s) 519, 730
PspN4I GGNNCC 3 cut(s) 62, 540, 585
PspPI GGNCC 1 cut(s) 160
PsuI RGATCY 2 cut(s) 1106, 1119
RruI TCGCGA 1 cut(s) 639
RsaI GTAC 1 cut(s) 284
RsaNI GTAC 1 cut(s) 283
RseI CAYNNNNRTG 2 cut(s) 455, 725
SaqAI TTAA 5 cut(s) 6, 270, 429, 741, 1192
SatI GCNGC 9 cut(s) 48, 197, 309, 360, 711, 956, 991, 1036, 1044
Sau3AI GATC 5 cut(s) 211, 1005, 1058, 1106, 1119
Sau96I GGNCC 1 cut(s) 160
ScrFI CCNGG 2 cut(s) 521, 732
SduI GDGCHC 2 cut(s) 265, 944
SfaNI GCATC 4 cut(s) 7, 113, 158, 1002
SgrAI CRCCGGYG 1 cut(s) 1085
SmiMI CAYNNNNRTG 2 cut(s) 455, 725
Sse9I AATT 8 cut(s) 186, 267, 492, 578, 825, 834, 891, 909
SsiI CCGC 8 cut(s) 158, 196, 950, 990, 1035, 1038, 1043, 1140
SspI AATATT 1 cut(s) 475
SspMI CTAG 1 cut(s) 75
StyD4I CCNGG 2 cut(s) 519, 730
TaaI ACNGT 1 cut(s) 36
TaiI ACGT 2 cut(s) 15, 947
TaqI TCGA 6 cut(s) 15, 573, 996, 1049, 1097, 1146
TasI AATT 8 cut(s) 186, 267, 492, 578, 825, 834, 891, 909
TatI WGTACW 1 cut(s) 282
TauI GCSGC 4 cut(s) 199, 993, 1038, 1046
TfiI GAWTC 2 cut(s) 845, 1156
Tru1I TTAA 5 cut(s) 6, 270, 429, 741, 1192
Tru9I TTAA 5 cut(s) 6, 270, 429, 741, 1192
TscAI CASTG 2 cut(s) 505, 813
TseFI GTSAC 1 cut(s) 566
TseI GCWGC 5 cut(s) 47, 308, 359, 710, 955
Tsp45I GTSAC 1 cut(s) 566
TspDTI ATGAA 2 cut(s) 191, 1130
TspGWI ACGGA 2 cut(s) 520, 765
TspRI CASTG 2 cut(s) 505, 813
VspI ATTAAT 1 cut(s) 270
XceI RCATGY 2 cut(s) 248, 460
XmnI GAANNNNTTC 2 cut(s) 186, 492
XspI CTAG 1 cut(s) 75
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.