Rh3CG277900

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0000319
Physical Location & Seq
Forward (+)
27899665 .. 27900246
582 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG277900.1

Sequence Viewer

Length: 582 bp
ATGGATCCTTGTCTCTATAGAGCAGCAAGATCTGGTGATATAAATTTCATGAATATTAAAGATGCATGTATTGATCCTCTCCATCAAAGAACGCCTAAAGAGAACAATCTTCTTCATATCGCTGCTGAATTCAAGCAAATAGATTTCTTCAAACATGTCAAACTCAACTATGAATCTCCGCGGTTTTGGGTCACCAACAAGTCCGGCGACACTCCATTGCACGTCGCAACCAGAGTAGGCTGTCATGAAGTTGTCGAGTTTGTCATTGACCACACAAAATCATTCCCCCTCGAAGGAGCTGATGATCAGGAAAGCGGACTACCTGATGCTAAAACTTATAAACAACTACTTAGAATGCCTAATTTTCAAAATGACACTGCTTTGCATATTGCTATGCGATATGGTCACGATAAGGTGACGACTTTACTAATCAAAGCTGACCCTGAACTCTGTTGTTACACAAATCGTGCGAAGGAGTCCCCGTTGTTCCTAGCTATTAGAAAGAGCTCTCCGAGCATCGCTAGTAACATTTTAGAGGAGTACGTCTCCTTCCCATGCGTCTCCTTACCTTCAAGGGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_4 Ank_5 PGG

Protein Analysis

193

Amino Acids

21.95

Weight (kDa)

6.44

Isoelectric Point (pI)

38.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 6 - 92 8.5e-07 Ankyrin repeats (3 copies)
Ank_2 PF12796 114 - 179 4.2e-06 Ankyrin repeats (3 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000319)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18590 FvH4_1g18590 FvH4_3g16140 FvH4_3g16141 FvH4_3g16160
malus_domestica MD02G1193600.v1.1 MD04G1020900.v1.1 MD04G1021000.v1.1 MD05G1212100.v1.1 MD05G1212300.v1.1 MD05G1213100.v1.1 MD05G1213400.v1.1 MD10G1197300.v1.1
prunus_persica Prupe.4G144500_v2.0.a1 Prupe.4G144600_v2.0.a1 Prupe.4G144800_v2.0.a1 Prupe.4G144900_v2.0.a1 Prupe.4G145100_v2.0.a1 Prupe.4G145300_v2.0.a1
pyrus_communis pycom02g15730 pycom02g15740 pycom05g19670 pycom05g19680 pycom10g17020 pycom11g27250
rosa_chinensis RchiOBHm_Chr2g0109301 RchiOBHm_Chr2g0109321 RchiOBHm_Chr2g0109341 RchiOBHm_Chr2g0109381 RchiOBHm_Chr3g0482301 RchiOBHm_Chr5g0027111 RchiOBHm_Chr5g0027121 RchiOBHm_Chr5g0027141 RchiOBHm_Chr5g0027181 RchiOBHm_Chr5g0027241
rosa_laevigata RLG00000017731 RLG00000017732 RLG00000032990 RLG00000032992 RLG00000032993 RLG00000032995 RLG00000032997 RLG00000033002
rosa_multiflora Rmu_sc0000135.1_g000002 Rmu_sc0000332.1_g000010 Rmu_sc0000882.1_g000028 Rmu_sc0000882.1_g000032 Rmu_sc0000882.1_g000033 Rmu_sc0000882.1_g000039 Rmu_sc0000882.1_g000043 Rmu_sc0000882.1_g000046 Rmu_sc0006065.1_g000003 Rmu_sc0006065.1_g000012 Rmu_sc0006065.1_g000018 Rmu_sc0006065.1_g000019 Rmu_sc0006065.1_g000022 Rmu_sc0007497.1_g000002 Rmu_sc0013610.1_g000011 Rmu_sc0015338.1_g000006 Rmu_ssc0000357.1_g000035
rosa_roxburghii Rroxscaffold_1G00052250 Rroxscaffold_1G00052280 Rroxscaffold_1G00052290 Rroxscaffold_1G00052310 Rroxscaffold_1G00052330 Rroxscaffold_1G00052360 Rroxscaffold_1G00052380 Rroxscaffold_1G00052390 Rroxscaffold_2G00134310 Rroxscaffold_2G00134330
rosa_rugosa Rorug02G0159400 Rorug05G0097300 Rorug05G0097500 Rorug05G0097600 Rorug05G0097700 Rorug05G0097700 Rorug05G0097700 Rorug05G0122900
rosa_samantha Rh2AG210900 Rh2AG211200 Rh2AG211500 Rh2BG221200 Rh2BG221800 Rh2CG213100 Rh2CG213200 Rh2CG213600 Rh3CG277900 Rh3CG278000 Rh3CG278600 Rh3DG274600 Rh5BG188600 Rh5BG188700 Rh5BG188900 Rh5BG189100 Rh5BG189200 Rh5BG189400 Rh5CG208400 Rh5CG208500 Rh5CG208700 Rh5CG209000 Rh5CG209100 Rh5CG209400 Rh5CG209700 Rh5CG209800 Rh5CG209900 Rh5CG210000 Rh5DG190500 Rh5DG190700 Rh5DG191200 Rh5DG191500
rosa_wichuraiana Rw3G022160 Rw5G017410 Rw5G017420 Rw5G017450 Rw5G017460 Rw5G017470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 339
AccII CGCG 1 cut(s) 181
AciI CCGC 3 cut(s) 179, 181, 315
AclWI GGATC 2 cut(s) 12, 68
AcsI RAATTY 2 cut(s) 43, 128
AfaI GTAC 1 cut(s) 542
AfiI CCNNNNNNNGG 1 cut(s) 293
AflIII ACRYGT 1 cut(s) 154
AgsI TTSAA 4 cut(s) 133, 151, 368, 573
AjiI CACGTC 1 cut(s) 223
AluBI AGCT 4 cut(s) 299, 437, 494, 507
AluI AGCT 4 cut(s) 299, 437, 494, 507
Alw21I GWGCWC 1 cut(s) 509
Alw26I GTCTC 3 cut(s) 17, 550, 565
AlwI GGATC 2 cut(s) 12, 68
ApeKI GCWGC 2 cut(s) 23, 122
ApoI RAATTY 2 cut(s) 43, 128
AsuHPI GGTGA 3 cut(s) 47, 184, 427
BamHI GGATCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 509
BarI GAAGNNNNNNTAC 2 cut(s) 533, 565
Bbv12I GWGCWC 1 cut(s) 509
BbvI GCAGC 2 cut(s) 35, 109
BccI CCATC 1 cut(s) 90
BclI TGATCA 1 cut(s) 304
BcoDI GTCTC 3 cut(s) 17, 550, 565
BfaI CTAG 2 cut(s) 491, 522
BfmI CTRYAG 1 cut(s) 16
BglII AGATCT 1 cut(s) 29
BisI GCNGC 2 cut(s) 24, 123
BlsI GCNGC 2 cut(s) 25, 124
BmgBI CACGTC 1 cut(s) 223
BmiI GGNNCC 1 cut(s) 6
BmsI GCATC 3 cut(s) 52, 316, 525
BplI GAGNNNNNCTC 2 cut(s) 530, 562
BsaJI CCNNGG 1 cut(s) 179
BsaXI ACNNNNNCTCC 2 cut(s) 467, 497
Bsc4I CCNNNNNNNGG 1 cut(s) 293
Bse3DI GCAATG 1 cut(s) 215
BseDI CCNNGG 1 cut(s) 179
BseLI CCNNNNNNNGG 1 cut(s) 293
BseMI GCAATG 1 cut(s) 215
BseRI GAGGAG 1 cut(s) 551
BseXI GCAGC 2 cut(s) 35, 109
Bsh1236I CGCG 1 cut(s) 181
BsiHKAI GWGCWC 1 cut(s) 509
BsiSI CCGG 1 cut(s) 204
BslFI GGGAC 1 cut(s) 463
BslI CCNNNNNNNGG 1 cut(s) 293
BsmAI GTCTC 3 cut(s) 17, 550, 565
BsmBI CGTCTC 2 cut(s) 550, 565
BsmFI GGGAC 1 cut(s) 463
BsmI GAATGC 1 cut(s) 360
Bsp1286I GDGCHC 1 cut(s) 509
Bsp143I GATC 4 cut(s) 4, 29, 73, 304
BspACI CCGC 3 cut(s) 179, 181, 315
BspFNI CGCG 1 cut(s) 181
BspHI TCATGA 2 cut(s) 48, 244
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 2 cut(s) 12, 68
BsrDI GCAATG 1 cut(s) 215
BssECI CCNNGG 1 cut(s) 179
BssMI GATC 4 cut(s) 4, 29, 73, 304
BstDEI CTNAG 1 cut(s) 350
BstDSI CCRYGG 1 cut(s) 179
BstEII GGTNACC 1 cut(s) 190
BstFNI CGCG 1 cut(s) 181
BstKTI GATC 4 cut(s) 7, 32, 76, 307
BstMAI GTCTC 3 cut(s) 17, 550, 565
BstMBI GATC 4 cut(s) 4, 29, 73, 304
BstMWI GCNNNNNNNGC 1 cut(s) 513
BstNSI RCATGY 2 cut(s) 69, 158
BstPI GGTNACC 1 cut(s) 190
BstSFI CTRYAG 1 cut(s) 16
BstUI CGCG 1 cut(s) 181
BstV1I GCAGC 2 cut(s) 35, 109
BstX2I RGATCY 2 cut(s) 4, 29
BstYI RGATCY 2 cut(s) 4, 29
BtgI CCRYGG 1 cut(s) 179
BtgZI GCGATG 1 cut(s) 502
BtrI CACGTC 1 cut(s) 223
BtsI GCAGTG 1 cut(s) 375
BtsIMutI CAGTG 1 cut(s) 375
CciI TCATGA 2 cut(s) 48, 244
Cfr42I CCGCGG 1 cut(s) 182
CseI GACGC 1 cut(s) 547
Csp6I GTAC 1 cut(s) 541
CviAII CATG 5 cut(s) 49, 66, 155, 245, 555
CviJI RGCY 5 cut(s) 240, 299, 437, 494, 507
CviKI_1 RGCY 5 cut(s) 240, 299, 437, 494, 507
CviQI GTAC 1 cut(s) 541
DdeI CTNAG 1 cut(s) 350
DpnI GATC 4 cut(s) 6, 31, 75, 306
DpnII GATC 4 cut(s) 4, 29, 73, 304
Ecl136II GAGCTC 1 cut(s) 507
Eco24I GRGCYC 1 cut(s) 509
Eco53kI GAGCTC 1 cut(s) 507
Eco91I GGTNACC 1 cut(s) 190
EcoICRI GAGCTC 1 cut(s) 507
EcoO65I GGTNACC 1 cut(s) 190
EcoRI GAATTC 1 cut(s) 128
EcoT22I ATGCAT 1 cut(s) 67
EcoT38I GRGCYC 1 cut(s) 509
Esp3I CGTCTC 2 cut(s) 550, 565
FaeI CATG 5 cut(s) 52, 69, 158, 248, 558
FaqI GGGAC 1 cut(s) 463
FatI CATG 5 cut(s) 48, 65, 154, 244, 554
FbaI TGATCA 1 cut(s) 304
Fnu4HI GCNGC 2 cut(s) 24, 123
FriOI GRGCYC 1 cut(s) 509
Fsp4HI GCNGC 2 cut(s) 24, 123
FspBI CTAG 2 cut(s) 491, 522
GluI GCNGC 2 cut(s) 24, 123
HapII CCGG 1 cut(s) 204
HgaI GACGC 1 cut(s) 547
Hin1II CATG 5 cut(s) 52, 69, 158, 248, 558
HinfI GANTC 2 cut(s) 173, 476
HpaII CCGG 1 cut(s) 204
HphI GGTGA 3 cut(s) 47, 184, 427
Hpy188I TCNGA 1 cut(s) 513
Hpy188III TCNNGA 4 cut(s) 49, 245, 308, 407
Hpy99I CGWCG 1 cut(s) 227
HpyAV CCTTC 4 cut(s) 287, 466, 559, 579
HpyCH4IV ACGT 2 cut(s) 222, 543
HpyCH4V TGCA 3 cut(s) 65, 220, 385
HpyF10VI GCNNNNNNNGC 1 cut(s) 513
HpyF3I CTNAG 1 cut(s) 350
HpySE526I ACGT 2 cut(s) 222, 543
Hsp92II CATG 5 cut(s) 52, 69, 158, 248, 558
Ksp22I TGATCA 1 cut(s) 304
KspI CCGCGG 1 cut(s) 182
Kzo9I GATC 4 cut(s) 4, 29, 73, 304
LmnI GCTCC 1 cut(s) 296
LpnPI CCDG 6 cut(s) 18, 217, 244, 293, 336, 456
Lsp1109I GCAGC 2 cut(s) 35, 109
LweI GCATC 3 cut(s) 52, 316, 525
MaeI CTAG 2 cut(s) 491, 522
MaeII ACGT 2 cut(s) 222, 543
MaeIII GTNAC 5 cut(s) 190, 404, 415, 455, 524
MalI GATC 4 cut(s) 6, 31, 75, 306
MboI GATC 4 cut(s) 4, 29, 73, 304
MboII GAAGA 3 cut(s) 101, 104, 139
MflI RGATCY 2 cut(s) 4, 29
MhlI GDGCHC 1 cut(s) 509
MluCI AATT 3 cut(s) 43, 128, 361
MlyI GAGTC 1 cut(s) 485
MnlI CCTC 3 cut(s) 87, 299, 529
Mph1103I ATGCAT 1 cut(s) 67
MseI TTAA 1 cut(s) 57
MspA1I CMGCKG 1 cut(s) 181
MspI CCGG 1 cut(s) 204
Mva1269I GAATGC 1 cut(s) 360
MvnI CGCG 1 cut(s) 181
MwoI GCNNNNNNNGC 1 cut(s) 513
NdeII GATC 4 cut(s) 4, 29, 73, 304
NlaIII CATG 5 cut(s) 52, 69, 158, 248, 558
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 3 cut(s) 190, 404, 415
NsiI ATGCAT 1 cut(s) 67
NspI RCATGY 2 cut(s) 69, 158
PagI TCATGA 2 cut(s) 48, 244
PciI ACATGT 1 cut(s) 154
PctI GAATGC 1 cut(s) 360
PfeI GAWTC 1 cut(s) 173
PkrI GCNGC 2 cut(s) 25, 124
PleI GAGTC 1 cut(s) 484
PpsI GAGTC 1 cut(s) 484
PscI ACATGT 1 cut(s) 154
PsiI TTATAA 1 cut(s) 339
Psp124BI GAGCTC 1 cut(s) 509
PspEI GGTNACC 1 cut(s) 190
PspN4I GGNNCC 1 cut(s) 6
PsuI RGATCY 2 cut(s) 4, 29
RsaI GTAC 1 cut(s) 542
RsaNI GTAC 1 cut(s) 541
SacI GAGCTC 1 cut(s) 509
SacII CCGCGG 1 cut(s) 182
SaqAI TTAA 1 cut(s) 57
SatI GCNGC 2 cut(s) 24, 123
Sau3AI GATC 4 cut(s) 4, 29, 73, 304
SchI GAGTC 1 cut(s) 485
SduI GDGCHC 1 cut(s) 509
SetI ASST 9 cut(s) 225, 301, 325, 417, 439, 496, 509, 546, 571
SfaNI GCATC 3 cut(s) 52, 316, 525
SfcI CTRYAG 1 cut(s) 16
Sfr303I CCGCGG 1 cut(s) 182
SgrBI CCGCGG 1 cut(s) 182
Sse9I AATT 3 cut(s) 43, 128, 361
SsiI CCGC 3 cut(s) 179, 181, 315
SspI AATATT 1 cut(s) 55
SspMI CTAG 2 cut(s) 491, 522
SstI GAGCTC 1 cut(s) 509
TaiI ACGT 2 cut(s) 225, 546
TaqI TCGA 2 cut(s) 255, 291
TasI AATT 3 cut(s) 43, 128, 361
TfiI GAWTC 1 cut(s) 173
Tru1I TTAA 1 cut(s) 57
Tru9I TTAA 1 cut(s) 57
TscAI CASTG 1 cut(s) 382
TseFI GTSAC 3 cut(s) 190, 404, 415
TseI GCWGC 2 cut(s) 23, 122
Tsp45I GTSAC 3 cut(s) 190, 404, 415
TspDTI ATGAA 5 cut(s) 37, 65, 104, 186, 261
TspRI CASTG 1 cut(s) 382
XapI RAATTY 2 cut(s) 43, 128
XceI RCATGY 2 cut(s) 69, 158
XspI CTAG 2 cut(s) 491, 522
Zsp2I ATGCAT 1 cut(s) 67
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.