Rmu_sc0015338.1_g000006

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0015338.1
OG0000319
Physical Location & Seq
Reverse (-)
19175 .. 20938
1764 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0015338.1_g000006.1.cds

Sequence Viewer

Length: 630 bp
atgggaacgactcatcgggactggatggagatcgaagatgtatgggacgtcgtggagggggtggctggatcgatccgggcttggatggttgggtggctggctggggacggtctaccccagatcgagggtgatggttcgttcccgatctggtttaggggggatgggggtagtgctaatgggtggagtggtgaggccgcgatcctggtagatgtgaccgcaacggcggtcaccaacaagtccagcgacactccattgtacgtcgcaaccagagtaggctgtcatgaagttgttgagtttgtcattgaccacacaaaatcattccccctcgaaggagctgatgatcaggaaagtggactagctcatgctaaaacttataaacaactacttagaatacctaattttcaaaatgacactgctttgcatattgctgtacgatatggtcacgataggataactgtaaaactaatttacaaacaagctcacacaattatatgttcaactcctgctatcagaagaccaaatcacataccattgatgtccaaggttgaagccatcgtagcagctgtagaaacaaaagatgaaggtgaggttgaagtcttctgctattcaccaactgtagcttctgaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_4 Ank_5 PGG

Protein Analysis

209

Amino Acids

22.86

Weight (kDa)

5.03

Isoelectric Point (pI)

35.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000319)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18590 FvH4_1g18590 FvH4_3g16140 FvH4_3g16141 FvH4_3g16160
malus_domestica MD02G1193600.v1.1 MD04G1020900.v1.1 MD04G1021000.v1.1 MD05G1212100.v1.1 MD05G1212300.v1.1 MD05G1213100.v1.1 MD05G1213400.v1.1 MD10G1197300.v1.1
prunus_persica Prupe.4G144500_v2.0.a1 Prupe.4G144600_v2.0.a1 Prupe.4G144800_v2.0.a1 Prupe.4G144900_v2.0.a1 Prupe.4G145100_v2.0.a1 Prupe.4G145300_v2.0.a1
pyrus_communis pycom02g15730 pycom02g15740 pycom05g19670 pycom05g19680 pycom10g17020 pycom11g27250
rosa_chinensis RchiOBHm_Chr2g0109301 RchiOBHm_Chr2g0109321 RchiOBHm_Chr2g0109341 RchiOBHm_Chr2g0109381 RchiOBHm_Chr3g0482301 RchiOBHm_Chr5g0027111 RchiOBHm_Chr5g0027121 RchiOBHm_Chr5g0027141 RchiOBHm_Chr5g0027181 RchiOBHm_Chr5g0027241
rosa_laevigata RLG00000017731 RLG00000017732 RLG00000032990 RLG00000032992 RLG00000032993 RLG00000032995 RLG00000032997 RLG00000033002
rosa_multiflora Rmu_sc0000135.1_g000002 Rmu_sc0000332.1_g000010 Rmu_sc0000882.1_g000028 Rmu_sc0000882.1_g000032 Rmu_sc0000882.1_g000033 Rmu_sc0000882.1_g000039 Rmu_sc0000882.1_g000043 Rmu_sc0000882.1_g000046 Rmu_sc0006065.1_g000003 Rmu_sc0006065.1_g000012 Rmu_sc0006065.1_g000018 Rmu_sc0006065.1_g000019 Rmu_sc0006065.1_g000022 Rmu_sc0007497.1_g000002 Rmu_sc0013610.1_g000011 Rmu_sc0015338.1_g000006 Rmu_ssc0000357.1_g000035
rosa_roxburghii Rroxscaffold_1G00052250 Rroxscaffold_1G00052280 Rroxscaffold_1G00052290 Rroxscaffold_1G00052310 Rroxscaffold_1G00052330 Rroxscaffold_1G00052360 Rroxscaffold_1G00052380 Rroxscaffold_1G00052390 Rroxscaffold_2G00134310 Rroxscaffold_2G00134330
rosa_rugosa Rorug02G0159400 Rorug05G0097300 Rorug05G0097500 Rorug05G0097600 Rorug05G0097700 Rorug05G0097700 Rorug05G0097700 Rorug05G0122900
rosa_samantha Rh2AG210900 Rh2AG211200 Rh2AG211500 Rh2BG221200 Rh2BG221800 Rh2CG213100 Rh2CG213200 Rh2CG213600 Rh3CG277900 Rh3CG278000 Rh3CG278600 Rh3DG274600 Rh5BG188600 Rh5BG188700 Rh5BG188900 Rh5BG189100 Rh5BG189200 Rh5BG189400 Rh5CG208400 Rh5CG208500 Rh5CG208700 Rh5CG209000 Rh5CG209100 Rh5CG209400 Rh5CG209700 Rh5CG209800 Rh5CG209900 Rh5CG210000 Rh5DG190500 Rh5DG190700 Rh5DG191200 Rh5DG191500
rosa_wichuraiana Rw3G022160 Rw5G017410 Rw5G017420 Rw5G017450 Rw5G017460 Rw5G017470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 375
AatII GACGTC 1 cut(s) 51
AccI GTMKAC 1 cut(s) 112
AccII CGCG 1 cut(s) 197
AciI CCGC 3 cut(s) 195, 216, 224
AclWI GGATC 3 cut(s) 67, 76, 193
AcyI GRCGYC 1 cut(s) 48
AfaI GTAC 2 cut(s) 257, 432
AfiI CCNNNNNNNGG 2 cut(s) 124, 329
AgsI TTSAA 4 cut(s) 404, 498, 548, 593
AjnI CCWGG 1 cut(s) 201
AjuI GAANNNNNNNTTGG 1 cut(s) 604
AluBI AGCT 5 cut(s) 335, 359, 479, 563, 620
AluI AGCT 5 cut(s) 335, 359, 479, 563, 620
AlwI GGATC 3 cut(s) 67, 76, 193
AoxI GGCC 1 cut(s) 192
ApeKI GCWGC 1 cut(s) 560
AsuC2I CCSGG 1 cut(s) 77
AsuHPI GGTGA 5 cut(s) 140, 200, 220, 596, 600
BbsI GAAGAC 2 cut(s) 520, 589
BbvI GCAGC 1 cut(s) 572
BccI CCATC 5 cut(s) 19, 79, 125, 155, 560
BceAI ACGGC 1 cut(s) 237
BciT130I CCWGG 1 cut(s) 203
BclI TGATCA 1 cut(s) 340
BcnI CCSGG 1 cut(s) 77
BfaI CTAG 1 cut(s) 356
BfmI CTRYAG 2 cut(s) 564, 615
BisI GCNGC 2 cut(s) 195, 561
BlsI GCNGC 2 cut(s) 196, 562
Bme1390I CCNGG 2 cut(s) 77, 203
BmrFI CCNGG 2 cut(s) 77, 203
BpiI GAAGAC 2 cut(s) 520, 589
BpuMI CCSGG 1 cut(s) 77
Bsa29I ATCGAT 1 cut(s) 71
BsaBI GATNNNNATC 1 cut(s) 29
BsaHI GRCGYC 1 cut(s) 48
BsaJI CCNNGG 1 cut(s) 540
Bsc4I CCNNNNNNNGG 2 cut(s) 124, 329
Bse1I ACTGG 1 cut(s) 26
Bse8I GATNNNNATC 1 cut(s) 29
BseBI CCWGG 1 cut(s) 203
BseCI ATCGAT 1 cut(s) 71
BseDI CCNNGG 1 cut(s) 540
BseGI GGATG 3 cut(s) 30, 90, 166
BseJI GATNNNNATC 1 cut(s) 29
BseLI CCNNNNNNNGG 2 cut(s) 124, 329
BseNI ACTGG 1 cut(s) 26
BseXI GCAGC 1 cut(s) 572
BseYI CCCAGC 1 cut(s) 101
Bsh1236I CGCG 1 cut(s) 197
BshFI GGCC 1 cut(s) 194
BshVI ATCGAT 1 cut(s) 71
BsiSI CCGG 1 cut(s) 76
BslFI GGGAC 3 cut(s) 32, 59, 119
BslI CCNNNNNNNGG 2 cut(s) 124, 329
BsmFI GGGAC 3 cut(s) 32, 59, 119
BsnI GGCC 1 cut(s) 194
Bsp143I GATC 7 cut(s) 30, 68, 72, 120, 144, 198, 340
BspACI CCGC 3 cut(s) 195, 216, 224
BspANI GGCC 1 cut(s) 194
BspDI ATCGAT 1 cut(s) 71
BspFNI CGCG 1 cut(s) 197
BspHI TCATGA 1 cut(s) 280
BspPI GGATC 3 cut(s) 67, 76, 193
BsrI ACTGG 1 cut(s) 26
BssECI CCNNGG 1 cut(s) 540
BssMI GATC 7 cut(s) 30, 68, 72, 120, 144, 198, 340
BssNI GRCGYC 1 cut(s) 48
BssT1I CCWWGG 1 cut(s) 540
Bst2UI CCWGG 1 cut(s) 203
Bst4CI ACNGT 3 cut(s) 110, 457, 616
BstACI GRCGYC 1 cut(s) 48
BstC8I GCNNGC 1 cut(s) 99
BstDEI CTNAG 1 cut(s) 386
BstEII GGTNACC 1 cut(s) 226
BstF5I GGATG 3 cut(s) 30, 90, 166
BstFNI CGCG 1 cut(s) 197
BstKTI GATC 7 cut(s) 33, 71, 75, 123, 147, 201, 343
BstMBI GATC 7 cut(s) 30, 68, 72, 120, 144, 198, 340
BstMWI GCNNNNNNNGC 1 cut(s) 557
BstNI CCWGG 1 cut(s) 203
BstPI GGTNACC 1 cut(s) 226
BstSCI CCNGG 2 cut(s) 75, 201
BstSFI CTRYAG 2 cut(s) 564, 615
BstUI CGCG 1 cut(s) 197
BstV1I GCAGC 1 cut(s) 572
BstV2I GAAGAC 2 cut(s) 520, 589
Bsu15I ATCGAT 1 cut(s) 71
BsuRI GGCC 1 cut(s) 194
BsuTUI ATCGAT 1 cut(s) 71
BtsCI GGATG 3 cut(s) 30, 90, 166
BtsI GCAGTG 1 cut(s) 411
BtsIMutI CAGTG 1 cut(s) 411
Cac8I GCNNGC 1 cut(s) 99
CciI TCATGA 1 cut(s) 280
ClaI ATCGAT 1 cut(s) 71
Csp6I GTAC 2 cut(s) 256, 431
CviAII CATG 2 cut(s) 281, 362
CviQI GTAC 2 cut(s) 256, 431
DdeI CTNAG 1 cut(s) 386
DpnI GATC 7 cut(s) 32, 70, 74, 122, 146, 200, 342
DpnII GATC 7 cut(s) 30, 68, 72, 120, 144, 198, 340
Eco130I CCWWGG 1 cut(s) 540
Eco91I GGTNACC 1 cut(s) 226
EcoO65I GGTNACC 1 cut(s) 226
EcoRII CCWGG 1 cut(s) 201
EcoT14I CCWWGG 1 cut(s) 540
ErhI CCWWGG 1 cut(s) 540
FaeI CATG 2 cut(s) 284, 365
FaiI YATR 9 cut(s) 43, 282, 363, 375, 423, 438, 491, 493, 527
FaqI GGGAC 3 cut(s) 32, 59, 119
FatI CATG 2 cut(s) 280, 361
FbaI TGATCA 1 cut(s) 340
FblI GTMKAC 1 cut(s) 112
Fnu4HI GCNGC 2 cut(s) 195, 561
FokI GGATG 3 cut(s) 37, 97, 173
Fsp4HI GCNGC 2 cut(s) 195, 561
FspBI CTAG 1 cut(s) 356
GluI GCNGC 2 cut(s) 195, 561
GsaI CCCAGC 1 cut(s) 105
HaeIII GGCC 1 cut(s) 194
HapII CCGG 1 cut(s) 76
Hin1I GRCGYC 1 cut(s) 48
Hin1II CATG 2 cut(s) 284, 365
HinfI GANTC 1 cut(s) 10
HpaII CCGG 1 cut(s) 76
HphI GGTGA 5 cut(s) 140, 200, 220, 596, 600
Hpy166II GTNNAC 2 cut(s) 113, 353
Hpy188I TCNGA 2 cut(s) 512, 625
Hpy188III TCNNGA 5 cut(s) 17, 142, 281, 344, 443
Hpy8I GTNNAC 2 cut(s) 113, 353
Hpy99I CGWCG 2 cut(s) 53, 263
HpyAV CCTTC 2 cut(s) 323, 575
HpyCH4III ACNGT 3 cut(s) 110, 457, 616
HpyCH4IV ACGT 2 cut(s) 48, 258
HpyCH4V TGCA 1 cut(s) 421
HpyF10VI GCNNNNNNNGC 1 cut(s) 557
HpyF3I CTNAG 1 cut(s) 386
HpySE526I ACGT 2 cut(s) 48, 258
Hsp92I GRCGYC 1 cut(s) 48
Hsp92II CATG 2 cut(s) 284, 365
Ksp22I TGATCA 1 cut(s) 340
Kzo9I GATC 7 cut(s) 30, 68, 72, 120, 144, 198, 340
LmnI GCTCC 1 cut(s) 332
Lsp1109I GCAGC 1 cut(s) 572
MaeI CTAG 1 cut(s) 356
MaeII ACGT 2 cut(s) 48, 258
MaeIII GTNAC 3 cut(s) 211, 226, 440
MalI GATC 7 cut(s) 32, 70, 74, 122, 146, 200, 342
MboI GATC 7 cut(s) 30, 68, 72, 120, 144, 198, 340
MboII GAAGA 3 cut(s) 47, 525, 589
MluCI AATT 3 cut(s) 397, 465, 486
MlyI GAGTC 1 cut(s) 4
MnlI CCTC 5 cut(s) 49, 118, 184, 335, 580
MspA1I CMGCKG 1 cut(s) 563
MspI CCGG 1 cut(s) 76
MspR9I CCNGG 2 cut(s) 77, 203
MvaI CCWGG 1 cut(s) 203
MvnI CGCG 1 cut(s) 197
MwoI GCNNNNNNNGC 1 cut(s) 557
NciI CCSGG 1 cut(s) 77
NdeII GATC 7 cut(s) 30, 68, 72, 120, 144, 198, 340
NlaIII CATG 2 cut(s) 284, 365
NmuCI GTSAC 3 cut(s) 211, 226, 440
PagI TCATGA 1 cut(s) 280
PkrI GCNGC 2 cut(s) 196, 562
PleI GAGTC 1 cut(s) 4
PpsI GAGTC 1 cut(s) 4
PsiI TTATAA 1 cut(s) 375
Psp6I CCWGG 1 cut(s) 201
PspEI GGTNACC 1 cut(s) 226
PspFI CCCAGC 1 cut(s) 101
PspGI CCWGG 1 cut(s) 201
PvuII CAGCTG 1 cut(s) 563
RsaI GTAC 2 cut(s) 257, 432
RsaNI GTAC 2 cut(s) 256, 431
SatI GCNGC 2 cut(s) 195, 561
Sau3AI GATC 7 cut(s) 30, 68, 72, 120, 144, 198, 340
SchI GAGTC 1 cut(s) 4
ScrFI CCNGG 2 cut(s) 77, 203
SfcI CTRYAG 2 cut(s) 564, 615
Sse9I AATT 3 cut(s) 397, 465, 486
SsiI CCGC 3 cut(s) 195, 216, 224
SspMI CTAG 1 cut(s) 356
StyD4I CCNGG 2 cut(s) 75, 201
StyI CCWWGG 1 cut(s) 540
TaaI ACNGT 3 cut(s) 110, 457, 616
TaiI ACGT 2 cut(s) 51, 261
TaqI TCGA 4 cut(s) 33, 71, 123, 327
TasI AATT 3 cut(s) 397, 465, 486
TauI GCSGC 1 cut(s) 197
TscAI CASTG 1 cut(s) 418
TseFI GTSAC 3 cut(s) 211, 226, 440
TseI GCWGC 1 cut(s) 560
Tsp45I GTSAC 3 cut(s) 211, 226, 440
TspDTI ATGAA 2 cut(s) 297, 594
TspRI CASTG 1 cut(s) 418
XmiI GTMKAC 1 cut(s) 112
XspI CTAG 1 cut(s) 356
ZraI GACGTC 1 cut(s) 49
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.