Rroxscaffold_1G00052380

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000319
Physical Location & Seq
Reverse (-)
73143062 .. 73145430
2369 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00052380.1

Sequence Viewer

Length: 1791 bp
ATGGATCCTTACCTGTATGAGGCGGCGACGCTGGGAGATGTCAGCTTCATGAGAAGAATCAGAGACGGCGACGTATTACTAAACCACGATCTTCTCCTTCAGAAAACGCCTAAAGACAACAACATCCTTCACATCGCCGCCGAATTCAAACAGATTGAGTTTTTCAGACAAGTCCCCAGTCATTATTCTCCTGCTCTGTTTTGGGCTGCCAACAAAAAGGGCGACACTCCTCTGCACGTGGCCGCTAGAGTAGGCTGTGATGAAATAGTCGAGTTCCTTATCGATCAGGCGAAAGCGCTGCACATAAGAGGAGCTGATGAGGAAAGCTGTCATCGAAAGTCGCTACTTCGGATGACGAATTTCGAAATGGATACGGCTCTGCATGTGGCTGTGCGGTACGGTCATCTTGGAGTGGTGATTATGTTAATGGAAGCCGATCCAGAACTGTGTTGTTTGACTAACAGGGCAGATGAATCGGTTTTGTTCTTGGCTGCTAGGAAGGGGTCTGCAGAGATTGCTCTTTATCTGTTGAACGAGTCTCGGGTGTGTCCTTGTTTTCGAGGGACTAATGGTGTGACGGCTTTGCACGCCGCTGTAACTCGCAGCAACCTCACCAGCAAAGGCATTGTGAGGACTATGGTGTCCAAAAATCCTGAGATGATTAAAAACGTCGATGCACTTGGCTGGACACCGTTACACTATGCAGCATTTAGAGGGAACCTTGAAGCGACTAGAGTCCTGATGCAATGTGATAGTTCTGCATCTTACATCTTAGACAACTCTGGAATGTCAGCTCTCCATGTAGCAGCCCATGCCGGCCGCACCAAGATAATGGAAGAACTGATTCGGTGGCGGCCTGATATTTGTGATCTGCTGAATGACAAAGGCCAAACGGCTTTACATGCGGCAGTATTAGGAGCACGAGTTAATGTTGTGGAGTACATATTGAAGACGCCTAAGCTTGCAGCGATTATAAACGAAGCAGATAAAGATGGAAACACTCCTTTGCACTTGGCTGCCCTTCAGCAAAATGATAAAATCATCAAAGTTCTGTCAGGCGATCGTAGAGTAGACATGATTGCTATTAATAAGGATTTCTCGAAGCCCATTGACATGTTTCTTGGTGACAATATTGGTGAACAGGAAACAATTCGCAGTGGTATGGTTTTGCACAACCTGGGGTGCTCCGTTGGTGTGCCATTTTTCCAACAACAAATCAGTCGTGACTTTAACAAATTGGAACCACCGGACAAGGATACAGACAAGACCAGAGAAAACCAACAGCAAGCTCCTCGCGATGATAATGCCTTGAAAAGAAATGACACCAAACTACTTGTAGCAACGCTGATTGCAACCGTCACATTTGCAGCTTCTTTCACCAATGTGCCTGGAGGATTTAAAGACGACGGAATGCCTGTTTTATATGACAAGGCGCCTTTCAAAGTGTTTCAGTTCTTCAATGCAGTGTCCTTCTACATCTCAATTCTTGCAATCTATAACGAGTCAACTCCGATAACTGTGTTATCCATCCATCTACCCACTCCATCAATTCTCATTCAGTATTCAATTGGAGGAATGGTGGTTGCATTTTTTTCGGGCACGTTAGCAGTGCAGCCGAGACACTACGATGGAAATTTGCTTGAATTTTTATTTGGTACAAGTTGGGTTGATATTGTGCTCGCGGTAATTTGTGGCATTTTATTAATATTAGCCATCATCCCCGTGCTGAAGTCTCTGATTCAAATAAGCAGGGGAAAGAGGATTCACTGGCTCCGAAACCGTGTAATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_4 Ank_5 PGG

Protein Analysis

596

Amino Acids

66.25

Weight (kDa)

7.01

Isoelectric Point (pI)

34.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 28 - 96 2.4e-07 Ankyrin repeats (3 copies)
Ank_2 PF12796 43 - 146 1.4e-10 Ankyrin repeats (3 copies)
Ank_2 PF12796 127 - 215 7.1e-09 Ankyrin repeats (3 copies)
Ank_2 PF12796 208 - 285 2.2e-11 Ankyrin repeats (3 copies)
Ank_4 PF13637 266 - 315 3.2e-06 Ankyrin repeats (many copies)
Ank_2 PF12796 290 - 352 5.4e-10 Ankyrin repeats (3 copies)
PGG PF13962 438 - 536 3.3e-18 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000319)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18590 FvH4_1g18590 FvH4_3g16140 FvH4_3g16141 FvH4_3g16160
malus_domestica MD02G1193600.v1.1 MD04G1020900.v1.1 MD04G1021000.v1.1 MD05G1212100.v1.1 MD05G1212300.v1.1 MD05G1213100.v1.1 MD05G1213400.v1.1 MD10G1197300.v1.1
prunus_persica Prupe.4G144500_v2.0.a1 Prupe.4G144600_v2.0.a1 Prupe.4G144800_v2.0.a1 Prupe.4G144900_v2.0.a1 Prupe.4G145100_v2.0.a1 Prupe.4G145300_v2.0.a1
pyrus_communis pycom02g15730 pycom02g15740 pycom05g19670 pycom05g19680 pycom10g17020 pycom11g27250
rosa_chinensis RchiOBHm_Chr2g0109301 RchiOBHm_Chr2g0109321 RchiOBHm_Chr2g0109341 RchiOBHm_Chr2g0109381 RchiOBHm_Chr3g0482301 RchiOBHm_Chr5g0027111 RchiOBHm_Chr5g0027121 RchiOBHm_Chr5g0027141 RchiOBHm_Chr5g0027181 RchiOBHm_Chr5g0027241
rosa_laevigata RLG00000017731 RLG00000017732 RLG00000032990 RLG00000032992 RLG00000032993 RLG00000032995 RLG00000032997 RLG00000033002
rosa_multiflora Rmu_sc0000135.1_g000002 Rmu_sc0000332.1_g000010 Rmu_sc0000882.1_g000028 Rmu_sc0000882.1_g000032 Rmu_sc0000882.1_g000033 Rmu_sc0000882.1_g000039 Rmu_sc0000882.1_g000043 Rmu_sc0000882.1_g000046 Rmu_sc0006065.1_g000003 Rmu_sc0006065.1_g000012 Rmu_sc0006065.1_g000018 Rmu_sc0006065.1_g000019 Rmu_sc0006065.1_g000022 Rmu_sc0007497.1_g000002 Rmu_sc0013610.1_g000011 Rmu_sc0015338.1_g000006 Rmu_ssc0000357.1_g000035
rosa_roxburghii Rroxscaffold_1G00052250 Rroxscaffold_1G00052280 Rroxscaffold_1G00052290 Rroxscaffold_1G00052310 Rroxscaffold_1G00052330 Rroxscaffold_1G00052360 Rroxscaffold_1G00052380 Rroxscaffold_1G00052390 Rroxscaffold_2G00134310 Rroxscaffold_2G00134330
rosa_rugosa Rorug02G0159400 Rorug05G0097300 Rorug05G0097500 Rorug05G0097600 Rorug05G0097700 Rorug05G0097700 Rorug05G0097700 Rorug05G0122900
rosa_samantha Rh2AG210900 Rh2AG211200 Rh2AG211500 Rh2BG221200 Rh2BG221800 Rh2CG213100 Rh2CG213200 Rh2CG213600 Rh3CG277900 Rh3CG278000 Rh3CG278600 Rh3DG274600 Rh5BG188600 Rh5BG188700 Rh5BG188900 Rh5BG189100 Rh5BG189200 Rh5BG189400 Rh5CG208400 Rh5CG208500 Rh5CG208700 Rh5CG209000 Rh5CG209100 Rh5CG209400 Rh5CG209700 Rh5CG209800 Rh5CG209900 Rh5CG210000 Rh5DG190500 Rh5DG190700 Rh5DG191200 Rh5DG191500
rosa_wichuraiana Rw3G022160 Rw5G017410 Rw5G017420 Rw5G017450 Rw5G017460 Rw5G017470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 974
AasI GACNNNNNNGTC 1 cut(s) 640
AccB1I GGYRCC 1 cut(s) 1432
AccI GTMKAC 1 cut(s) 1071
AccII CGCG 2 cut(s) 1296, 1682
AciI CCGC 9 cut(s) 23, 138, 243, 394, 591, 820, 853, 905, 1682
AclWI GGATC 2 cut(s) 12, 431
AcoI YGGCCR 2 cut(s) 240, 817
AcsI RAATTY 4 cut(s) 143, 358, 1633, 1643
AcuI CTGAAG 3 cut(s) 83, 1007, 1748
AcvI CACGTG 1 cut(s) 238
AcyI GRCGYC 2 cut(s) 953, 1433
AfaI GTAC 3 cut(s) 398, 941, 1657
AfeI AGCGCT 1 cut(s) 297
AfiI CCNNNNNNNGG 1 cut(s) 19
AflIII ACRYGT 1 cut(s) 1113
AjnI CCWGG 2 cut(s) 1176, 1387
AjuI GAANNNNNNNTTGG 2 cut(s) 1635, 1667
AleI CACNNNNGTG 1 cut(s) 1382
AluBI AGCT 7 cut(s) 45, 314, 327, 794, 961, 1289, 1370
AluI AGCT 7 cut(s) 45, 314, 327, 794, 961, 1289, 1370
Alw21I GWGCWC 3 cut(s) 922, 1187, 1680
Alw26I GTCTC 4 cut(s) 57, 543, 1612, 1737
AlwI GGATC 2 cut(s) 12, 431
Ama87I CYCGRG 1 cut(s) 540
Aor51HI AGCGCT 1 cut(s) 297
AoxI GGCC 4 cut(s) 240, 817, 854, 886
ApoI RAATTY 4 cut(s) 143, 358, 1633, 1643
AseI ATTAAT 2 cut(s) 1086, 1703
Asp700I GAANNNNTTC 2 cut(s) 843, 1149
AspLEI GCGC 2 cut(s) 298, 1435
AsuHPI GGTGA 5 cut(s) 427, 604, 1136, 1148, 1369
AsuII TTCGAA 1 cut(s) 363
AvaI CYCGRG 1 cut(s) 540
BaeGI GKGCMC 1 cut(s) 1601
BamHI GGATCC 1 cut(s) 4
BanI GGYRCC 1 cut(s) 1432
BauI CACGAG 1 cut(s) 921
BbrPI CACGTG 1 cut(s) 238
BbsI GAAGAC 1 cut(s) 956
Bbv12I GWGCWC 3 cut(s) 922, 1187, 1680
BccI CCATC 6 cut(s) 986, 1535, 1539, 1552, 1622, 1721
BceAI ACGGC 4 cut(s) 82, 390, 594, 909
BciT130I CCWGG 2 cut(s) 1178, 1389
BciVI GTATCC 2 cut(s) 364, 1249
BcoDI GTCTC 4 cut(s) 57, 543, 1612, 1737
BfaI CTAG 3 cut(s) 246, 495, 732
BfmI CTRYAG 1 cut(s) 507
BfoI RGCGCY 2 cut(s) 299, 1436
BfuI GTATCC 2 cut(s) 364, 1249
Bme1390I CCNGG 2 cut(s) 1178, 1389
BmeT110I CYCGRG 1 cut(s) 540
BmiI GGNNCC 5 cut(s) 6, 719, 1242, 1434, 1772
BmrFI CCNGG 2 cut(s) 1178, 1389
BmrI ACTGGG 1 cut(s) 171
BmsI GCATC 3 cut(s) 664, 732, 770
BmuI ACTGGG 1 cut(s) 171
BoxI GACNNNNGTC 1 cut(s) 734
BpiI GAAGAC 1 cut(s) 956
BpmI CTGGAG 1 cut(s) 1410
Bpu10I CCTNAGC 1 cut(s) 957
Bpu14I TTCGAA 1 cut(s) 363
Bsa29I ATCGAT 1 cut(s) 282
BsaAI YACGTR 1 cut(s) 238
BsaHI GRCGYC 2 cut(s) 953, 1433
BsaJI CCNNGG 1 cut(s) 1177
BsaWI WCCGGW 1 cut(s) 1246
BsaXI ACNNNNNCTCC 4 cut(s) 909, 939, 1563, 1593
Bsc4I CCNNNNNNNGG 1 cut(s) 19
Bse118I RCCGGY 1 cut(s) 815
Bse1I ACTGG 2 cut(s) 177, 1772
Bse3DI GCAATG 1 cut(s) 752
BseBI CCWGG 2 cut(s) 1178, 1389
BseCI ATCGAT 1 cut(s) 282
BseDI CCNNGG 1 cut(s) 1177
BseGI GGATG 4 cut(s) 123, 357, 1527, 1716
BseLI CCNNNNNNNGG 1 cut(s) 19
BseMI GCAATG 1 cut(s) 752
BseMII CTCAG 1 cut(s) 645
BseNI ACTGG 2 cut(s) 177, 1772
BseRI GAGGAG 3 cut(s) 219, 324, 1281
BseSI GKGCMC 1 cut(s) 1601
BseX3I CGGCCG 1 cut(s) 817
BseYI CCCAGC 1 cut(s) 31
BsgI GTGCAG 3 cut(s) 218, 284, 1631
Bsh1236I CGCG 2 cut(s) 1296, 1682
Bsh1285I CGRYCG 2 cut(s) 820, 1063
BshFI GGCC 4 cut(s) 242, 819, 856, 888
BshNI GGYRCC 1 cut(s) 1432
BshVI ATCGAT 1 cut(s) 282
BsiEI CGRYCG 2 cut(s) 820, 1063
BsiHKAI GWGCWC 3 cut(s) 922, 1187, 1680
BsiHKCI CYCGRG 1 cut(s) 540
BsiSI CCGG 2 cut(s) 816, 1247
BslFI GGGAC 2 cut(s) 158, 577
BslI CCNNNNNNNGG 1 cut(s) 19
BsmAI GTCTC 4 cut(s) 57, 543, 1612, 1737
BsmBI CGTCTC 1 cut(s) 57
BsmFI GGGAC 2 cut(s) 158, 577
BsmI GAATGC 1 cut(s) 1416
BsnI GGCC 4 cut(s) 242, 819, 856, 888
BsoBI CYCGRG 1 cut(s) 540
Bsp119I TTCGAA 1 cut(s) 363
Bsp1286I GDGCHC 4 cut(s) 922, 1187, 1601, 1680
Bsp143I GATC 6 cut(s) 4, 88, 283, 436, 868, 1060
Bsp68I TCGCGA 1 cut(s) 1296
BspACI CCGC 9 cut(s) 23, 138, 243, 394, 591, 820, 853, 905, 1682
BspANI GGCC 4 cut(s) 242, 819, 856, 888
BspCNI CTCAG 1 cut(s) 646
BspDI ATCGAT 1 cut(s) 282
BspFNI CGCG 2 cut(s) 1296, 1682
BspHI TCATGA 1 cut(s) 48
BspLI GGNNCC 5 cut(s) 6, 719, 1242, 1434, 1772
BspMAI CTGCAG 1 cut(s) 511
BspPI GGATC 2 cut(s) 12, 431
BspT104I TTCGAA 1 cut(s) 363
BspT107I GGYRCC 1 cut(s) 1432
BsrDI GCAATG 1 cut(s) 752
BsrFI RCCGGY 1 cut(s) 815
BsrI ACTGG 2 cut(s) 177, 1772
BssAI RCCGGY 1 cut(s) 815
BssECI CCNNGG 1 cut(s) 1177
BssMI GATC 6 cut(s) 4, 88, 283, 436, 868, 1060
BssNI GRCGYC 2 cut(s) 953, 1433
BssSI CACGAG 1 cut(s) 921
Bst2BI CACGAG 1 cut(s) 921
Bst2UI CCWGG 2 cut(s) 1178, 1389
Bst4CI ACNGT 6 cut(s) 401, 447, 693, 1357, 1519, 1781
BstACI GRCGYC 2 cut(s) 953, 1433
BstAPI GCANNNNNTGC 2 cut(s) 515, 812
BstBAI YACGTR 1 cut(s) 238
BstBI TTCGAA 1 cut(s) 363
BstC8I GCNNGC 5 cut(s) 588, 817, 963, 1287, 1680
BstDEI CTNAG 3 cut(s) 654, 772, 957
BstENI CCTNNNNNAGG 1 cut(s) 17
BstF5I GGATG 4 cut(s) 123, 357, 1527, 1716
BstFNI CGCG 2 cut(s) 1296, 1682
BstH2I RGCGCY 2 cut(s) 299, 1436
BstHHI GCGC 2 cut(s) 298, 1435
BstKTI GATC 6 cut(s) 7, 91, 286, 439, 871, 1063
BstMAI GTCTC 4 cut(s) 57, 543, 1612, 1737
BstMBI GATC 6 cut(s) 4, 88, 283, 436, 868, 1060
BstMCI CGRYCG 2 cut(s) 820, 1063
BstMWI GCNNNNNNNGC 4 cut(s) 515, 587, 812, 902
BstNI CCWGG 2 cut(s) 1178, 1389
BstNSI RCATGY 3 cut(s) 386, 905, 1117
BstPAI GACNNNNGTC 1 cut(s) 734
BstSCI CCNGG 2 cut(s) 1176, 1387
BstSFI CTRYAG 1 cut(s) 507
BstSLI GKGCMC 1 cut(s) 1601
BstUI CGCG 2 cut(s) 1296, 1682
BstV2I GAAGAC 1 cut(s) 956
BstX2I RGATCY 1 cut(s) 4
BstXI CCANNNNNNTGG 1 cut(s) 832
BstYI RGATCY 1 cut(s) 4
BstZI CGGCCG 1 cut(s) 817
Bsu15I ATCGAT 1 cut(s) 282
BsuI GTATCC 2 cut(s) 364, 1249
BsuRI GGCC 4 cut(s) 242, 819, 856, 888
BsuTUI ATCGAT 1 cut(s) 282
BtgZI GCGATG 2 cut(s) 118, 1311
BtsCI GGATG 4 cut(s) 123, 357, 1527, 1716
BtsI GCAGTG 3 cut(s) 1162, 1470, 1614
BtsIMutI CAGTG 4 cut(s) 1162, 1470, 1614, 1765
BtuMI TCGCGA 1 cut(s) 1296
Cac8I GCNNGC 5 cut(s) 588, 817, 963, 1287, 1680
CciI TCATGA 1 cut(s) 48
CfoI GCGC 2 cut(s) 298, 1435
Cfr10I RCCGGY 1 cut(s) 815
ClaI ATCGAT 1 cut(s) 282
CseI GACGC 2 cut(s) 37, 961
Csp6I GTAC 3 cut(s) 397, 940, 1656
CviAII CATG 7 cut(s) 49, 383, 800, 812, 902, 1075, 1114
CviQI GTAC 3 cut(s) 397, 940, 1656
DdeI CTNAG 3 cut(s) 654, 772, 957
DinI GGCGCC 1 cut(s) 1434
DpnI GATC 6 cut(s) 6, 90, 285, 438, 870, 1062
DpnII GATC 6 cut(s) 4, 88, 283, 436, 868, 1060
DraI TTTAAA 1 cut(s) 1399
DrdI GACNNNNNNGTC 1 cut(s) 640
DseDI GACNNNNNNGTC 1 cut(s) 640
EaeI YGGCCR 2 cut(s) 240, 817
EagI CGGCCG 1 cut(s) 817
EclXI CGGCCG 1 cut(s) 817
Eco47III AGCGCT 1 cut(s) 297
Eco52I CGGCCG 1 cut(s) 817
Eco57I CTGAAG 3 cut(s) 83, 1007, 1748
Eco72I CACGTG 1 cut(s) 238
Eco88I CYCGRG 1 cut(s) 540
EcoNI CCTNNNNNAGG 1 cut(s) 17
EcoRI GAATTC 1 cut(s) 143
EcoRII CCWGG 2 cut(s) 1176, 1387
EgeI GGCGCC 1 cut(s) 1434
EheI GGCGCC 1 cut(s) 1434
Esp3I CGTCTC 1 cut(s) 57
FaeI CATG 7 cut(s) 52, 386, 803, 815, 905, 1078, 1117
FaqI GGGAC 2 cut(s) 158, 577
FatI CATG 7 cut(s) 48, 382, 799, 811, 901, 1074, 1113
FblI GTMKAC 1 cut(s) 1071
FokI GGATG 4 cut(s) 110, 364, 1514, 1703
FspBI CTAG 3 cut(s) 246, 495, 732
GlaI GCGC 2 cut(s) 297, 1434
GsaI CCCAGC 1 cut(s) 35
GsuI CTGGAG 1 cut(s) 1410
HaeII RGCGCY 2 cut(s) 299, 1436
HaeIII GGCC 4 cut(s) 242, 819, 856, 888
HapII CCGG 2 cut(s) 816, 1247
HgaI GACGC 2 cut(s) 37, 961
HhaI GCGC 2 cut(s) 298, 1435
Hin1I GRCGYC 2 cut(s) 953, 1433
Hin1II CATG 7 cut(s) 52, 386, 803, 815, 905, 1078, 1117
Hin6I GCGC 2 cut(s) 296, 1433
HinP1I GCGC 2 cut(s) 296, 1433
HincII GTYRAC 1 cut(s) 1506
HindII GTYRAC 1 cut(s) 1506
HindIII AAGCTT 1 cut(s) 959
HinfI GANTC 8 cut(s) 57, 473, 536, 735, 844, 1502, 1738, 1762
HpaII CCGG 2 cut(s) 816, 1247
HphI GGTGA 5 cut(s) 427, 604, 1136, 1148, 1369
Hpy166II GTNNAC 3 cut(s) 1072, 1139, 1506
Hpy188I TCNGA 7 cut(s) 62, 102, 167, 351, 1512, 1737, 1775
Hpy188III TCNNGA 8 cut(s) 49, 440, 653, 739, 783, 1099, 1223, 1295
Hpy8I GTNNAC 3 cut(s) 1072, 1139, 1506
Hpy99I CGWCG 4 cut(s) 31, 74, 674, 1409
HpyAV CCTTC 5 cut(s) 107, 137, 493, 1031, 1480
HpyCH4III ACNGT 6 cut(s) 401, 447, 693, 1357, 1519, 1781
HpyCH4IV ACGT 4 cut(s) 72, 237, 669, 1601
HpyF10VI GCNNNNNNNGC 4 cut(s) 515, 587, 812, 902
HpyF3I CTNAG 3 cut(s) 654, 772, 957
HpySE526I ACGT 4 cut(s) 72, 237, 669, 1601
Hsp92I GRCGYC 2 cut(s) 953, 1433
Hsp92II CATG 7 cut(s) 52, 386, 803, 815, 905, 1078, 1117
HspAI GCGC 2 cut(s) 296, 1433
KasI GGCGCC 1 cut(s) 1432
KroI GCCGGC 1 cut(s) 815
KroNI GCCGGC 1 cut(s) 817
Kzo9I GATC 6 cut(s) 4, 88, 283, 436, 868, 1060
LmnI GCTCC 5 cut(s) 311, 917, 1190, 1294, 1776
LweI GCATC 3 cut(s) 664, 732, 770
MaeI CTAG 3 cut(s) 246, 495, 732
MaeII ACGT 4 cut(s) 72, 237, 669, 1601
MaeIII GTNAC 6 cut(s) 574, 595, 693, 1124, 1223, 1357
MalI GATC 6 cut(s) 6, 90, 285, 438, 870, 1062
MboI GATC 6 cut(s) 4, 88, 283, 436, 868, 1060
MboII GAAGA 5 cut(s) 66, 83, 848, 961, 1447
MfeI CAATTG 1 cut(s) 1566
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 4 cut(s) 922, 1187, 1601, 1680
Mly113I GGCGCC 1 cut(s) 1433
MlyI GAGTC 3 cut(s) 545, 744, 1511
MmeI TCCRAC 1 cut(s) 1231
MroNI GCCGGC 1 cut(s) 815
MroXI GAANNNNTTC 2 cut(s) 843, 1149
MseI TTAA 8 cut(s) 425, 663, 927, 1086, 1230, 1398, 1703, 1789
MslI CAYNNNNRTG 4 cut(s) 1112, 1382, 1626, 1721
MspA1I CMGCKG 1 cut(s) 593
MspI CCGG 2 cut(s) 816, 1247
MspR9I CCNGG 2 cut(s) 1178, 1389
MunI CAATTG 1 cut(s) 1566
Mva1269I GAATGC 1 cut(s) 1416
MvaI CCWGG 2 cut(s) 1178, 1389
MvnI CGCG 2 cut(s) 1296, 1682
MwoI GCNNNNNNNGC 4 cut(s) 515, 587, 812, 902
NaeI GCCGGC 1 cut(s) 817
NarI GGCGCC 1 cut(s) 1433
NdeII GATC 6 cut(s) 4, 88, 283, 436, 868, 1060
NgoMIV GCCGGC 1 cut(s) 815
NlaIII CATG 7 cut(s) 52, 386, 803, 815, 905, 1078, 1117
NlaIV GGNNCC 5 cut(s) 6, 719, 1242, 1434, 1772
NmeAIII GCCGAG 1 cut(s) 1641
NmuCI GTSAC 4 cut(s) 574, 1124, 1223, 1357
NruI TCGCGA 1 cut(s) 1296
NspI RCATGY 3 cut(s) 386, 905, 1117
NspV TTCGAA 1 cut(s) 363
OliI CACNNNNGTG 1 cut(s) 1382
PagI TCATGA 1 cut(s) 48
PciI ACATGT 1 cut(s) 1113
PctI GAATGC 1 cut(s) 1416
PdiI GCCGGC 1 cut(s) 817
PdmI GAANNNNTTC 2 cut(s) 843, 1149
PfeI GAWTC 5 cut(s) 57, 473, 844, 1738, 1762
Ple19I CGATCG 1 cut(s) 1063
PleI GAGTC 3 cut(s) 544, 743, 1510
PluTI GGCGCC 1 cut(s) 1436
PmaCI CACGTG 1 cut(s) 238
PmlI CACGTG 1 cut(s) 238
PpsI GAGTC 3 cut(s) 544, 743, 1510
Ppu21I YACGTR 1 cut(s) 238
PscI ACATGT 1 cut(s) 1113
PshAI GACNNNNGTC 1 cut(s) 734
PshBI ATTAAT 2 cut(s) 1086, 1703
PsiI TTATAA 1 cut(s) 974
Psp6I CCWGG 2 cut(s) 1176, 1387
PspCI CACGTG 1 cut(s) 238
PspFI CCCAGC 1 cut(s) 31
PspGI CCWGG 2 cut(s) 1176, 1387
PspN4I GGNNCC 5 cut(s) 6, 719, 1242, 1434, 1772
PstI CTGCAG 1 cut(s) 511
PsuI RGATCY 1 cut(s) 4
PvuI CGATCG 1 cut(s) 1063
RruI TCGCGA 1 cut(s) 1296
RsaI GTAC 3 cut(s) 398, 941, 1657
RsaNI GTAC 3 cut(s) 397, 940, 1656
RseI CAYNNNNRTG 4 cut(s) 1112, 1382, 1626, 1721
SaqAI TTAA 8 cut(s) 425, 663, 927, 1086, 1230, 1398, 1703, 1789
Sau3AI GATC 6 cut(s) 4, 88, 283, 436, 868, 1060
SchI GAGTC 3 cut(s) 545, 744, 1511
ScrFI CCNGG 2 cut(s) 1178, 1389
SduI GDGCHC 4 cut(s) 922, 1187, 1601, 1680
SfaNI GCATC 3 cut(s) 664, 732, 770
SfcI CTRYAG 1 cut(s) 507
SfoI GGCGCC 1 cut(s) 1434
SfuI TTCGAA 1 cut(s) 363
SmiMI CAYNNNNRTG 4 cut(s) 1112, 1382, 1626, 1721
SsiI CCGC 9 cut(s) 23, 138, 243, 394, 591, 820, 853, 905, 1682
SspDI GGCGCC 1 cut(s) 1432
SspI AATATT 2 cut(s) 1132, 1707
SspMI CTAG 3 cut(s) 246, 495, 732
StyD4I CCNGG 2 cut(s) 1176, 1387
TaaI ACNGT 6 cut(s) 401, 447, 693, 1357, 1519, 1781
TaiI ACGT 4 cut(s) 75, 240, 672, 1604
TaqI TCGA 7 cut(s) 270, 282, 334, 363, 559, 672, 1100
TatI WGTACW 1 cut(s) 939
TauI GCSGC 7 cut(s) 26, 140, 245, 593, 822, 856, 908
TfiI GAWTC 5 cut(s) 57, 473, 844, 1738, 1762
Tru1I TTAA 8 cut(s) 425, 663, 927, 1086, 1230, 1398, 1703, 1789
Tru9I TTAA 8 cut(s) 425, 663, 927, 1086, 1230, 1398, 1703, 1789
TscAI CASTG 4 cut(s) 1162, 1470, 1614, 1772
TseFI GTSAC 4 cut(s) 574, 1124, 1223, 1357
Tsp45I GTSAC 4 cut(s) 574, 1124, 1223, 1357
TspDTI ATGAA 3 cut(s) 37, 276, 486
TspGWI ACGGA 2 cut(s) 1177, 1422
TspRI CASTG 4 cut(s) 1162, 1470, 1614, 1772
VspI ATTAAT 2 cut(s) 1086, 1703
XagI CCTNNNNNAGG 1 cut(s) 17
XapI RAATTY 4 cut(s) 143, 358, 1633, 1643
XceI RCATGY 3 cut(s) 386, 905, 1117
XmiI GTMKAC 1 cut(s) 1071
XmnI GAANNNNTTC 2 cut(s) 843, 1149
XspI CTAG 3 cut(s) 246, 495, 732
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.