RLG00000032992

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000319
Physical Location & Seq
Forward (+)
21811834 .. 21812471
638 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032992

Sequence Viewer

Length: 594 bp
ATGGATCCTCGGCTATATGAGGCGCTAACATCCGGTGACGTTGATTTCTTGAAGATACATGTCAGAGATGATAATCTTCTCAGTCAGAGAACACCTAAATACAACAACATTCTTCACCTTGCTGCTGAATTCAAACACATAAACGTCTTCACGAAAGTACCACTAGATGATCAATCTCCGCTGTTTTGGGCTGCCAACAAGTATGGCGACACCCCTCTGCACGTTGCTGCAAGAGTAGGGGCAATGAGTGAAGCAGCTGATGCGGAAAGTGGACCAGCTGATGCTGAAGCTTACAAAGAGCTGCTTCGTGTTACTAATTTGCGGAAGGATACAGCATTTCATGTAGCTGTCCAATATGGTCACAGTGAAGTGGTGAATTTGTTAATGGCGGCTGATCCAGAATTTTGTTGTTTTACTAACAGCGCCACTGAGTCACCGCTCTTCATAGCTGTTCGCAAGGACTTTAACCTCATAGCTCATTCTATTTTAGTGAAGTGTCCAATTTCTCCTTCTTTTGAAGGAACCGACGGTATGACAGCTTTGCATGCCGTGGTAACTCACAGGCACAAAAGCATGAGACGTAAGTACATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 Ank_5 PGG

Protein Analysis

198

Amino Acids

21.98

Weight (kDa)

6.35

Isoelectric Point (pI)

33.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 114 - 191 4.8e-06 Ankyrin repeats (3 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000319)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18590 FvH4_1g18590 FvH4_3g16140 FvH4_3g16141 FvH4_3g16160
malus_domestica MD02G1193600.v1.1 MD04G1020900.v1.1 MD04G1021000.v1.1 MD05G1212100.v1.1 MD05G1212300.v1.1 MD05G1213100.v1.1 MD05G1213400.v1.1 MD10G1197300.v1.1
prunus_persica Prupe.4G144500_v2.0.a1 Prupe.4G144600_v2.0.a1 Prupe.4G144800_v2.0.a1 Prupe.4G144900_v2.0.a1 Prupe.4G145100_v2.0.a1 Prupe.4G145300_v2.0.a1
pyrus_communis pycom02g15730 pycom02g15740 pycom05g19670 pycom05g19680 pycom10g17020 pycom11g27250
rosa_chinensis RchiOBHm_Chr2g0109301 RchiOBHm_Chr2g0109321 RchiOBHm_Chr2g0109341 RchiOBHm_Chr2g0109381 RchiOBHm_Chr3g0482301 RchiOBHm_Chr5g0027111 RchiOBHm_Chr5g0027121 RchiOBHm_Chr5g0027141 RchiOBHm_Chr5g0027181 RchiOBHm_Chr5g0027241
rosa_laevigata RLG00000017731 RLG00000017732 RLG00000032990 RLG00000032992 RLG00000032993 RLG00000032995 RLG00000032997 RLG00000033002
rosa_multiflora Rmu_sc0000135.1_g000002 Rmu_sc0000332.1_g000010 Rmu_sc0000882.1_g000028 Rmu_sc0000882.1_g000032 Rmu_sc0000882.1_g000033 Rmu_sc0000882.1_g000039 Rmu_sc0000882.1_g000043 Rmu_sc0000882.1_g000046 Rmu_sc0006065.1_g000003 Rmu_sc0006065.1_g000012 Rmu_sc0006065.1_g000018 Rmu_sc0006065.1_g000019 Rmu_sc0006065.1_g000022 Rmu_sc0007497.1_g000002 Rmu_sc0013610.1_g000011 Rmu_sc0015338.1_g000006 Rmu_ssc0000357.1_g000035
rosa_roxburghii Rroxscaffold_1G00052250 Rroxscaffold_1G00052280 Rroxscaffold_1G00052290 Rroxscaffold_1G00052310 Rroxscaffold_1G00052330 Rroxscaffold_1G00052360 Rroxscaffold_1G00052380 Rroxscaffold_1G00052390 Rroxscaffold_2G00134310 Rroxscaffold_2G00134330
rosa_rugosa Rorug02G0159400 Rorug05G0097300 Rorug05G0097500 Rorug05G0097600 Rorug05G0097700 Rorug05G0097700 Rorug05G0097700 Rorug05G0122900
rosa_samantha Rh2AG210900 Rh2AG211200 Rh2AG211500 Rh2BG221200 Rh2BG221800 Rh2CG213100 Rh2CG213200 Rh2CG213600 Rh3CG277900 Rh3CG278000 Rh3CG278600 Rh3DG274600 Rh5BG188600 Rh5BG188700 Rh5BG188900 Rh5BG189100 Rh5BG189200 Rh5BG189400 Rh5CG208400 Rh5CG208500 Rh5CG208700 Rh5CG209000 Rh5CG209100 Rh5CG209400 Rh5CG209700 Rh5CG209800 Rh5CG209900 Rh5CG210000 Rh5DG190500 Rh5DG190700 Rh5DG191200 Rh5DG191500
rosa_wichuraiana Rw3G022160 Rw5G017410 Rw5G017420 Rw5G017450 Rw5G017460 Rw5G017470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 439
AciI CCGC 5 cut(s) 179, 263, 322, 389, 437
AclWI GGATC 2 cut(s) 12, 389
AcsI RAATTY 3 cut(s) 128, 376, 401
AcuI CTGAAG 1 cut(s) 306
AfaI GTAC 2 cut(s) 159, 587
AflIII ACRYGT 1 cut(s) 58
AgsI TTSAA 3 cut(s) 52, 133, 518
AjuI GAANNNNNNNTTGG 2 cut(s) 493, 525
AluBI AGCT 8 cut(s) 257, 278, 290, 301, 347, 449, 476, 539
AluI AGCT 8 cut(s) 257, 278, 290, 301, 347, 449, 476, 539
Alw26I GTCTC 1 cut(s) 571
AlwI GGATC 2 cut(s) 12, 389
ApeKI GCWGC 5 cut(s) 122, 191, 227, 254, 301
ApoI RAATTY 3 cut(s) 128, 376, 401
AspLEI GCGC 2 cut(s) 25, 425
AspS9I GGNCC 1 cut(s) 272
AsuHPI GGTGA 4 cut(s) 47, 107, 385, 426
AvaII GGWCC 1 cut(s) 272
BaeI ACNNNNGTAYC 2 cut(s) 141, 174
BamHI GGATCC 1 cut(s) 4
BbsI GAAGAC 1 cut(s) 139
BbvI GCAGC 5 cut(s) 109, 178, 214, 266, 288
BceAI ACGGC 1 cut(s) 533
BciVI GTATCC 1 cut(s) 322
BclI TGATCA 1 cut(s) 169
BcoDI GTCTC 1 cut(s) 571
BfaI CTAG 1 cut(s) 164
BfoI RGCGCY 2 cut(s) 26, 426
BfuI GTATCC 1 cut(s) 322
BisI GCNGC 6 cut(s) 123, 192, 228, 255, 302, 390
BlsI GCNGC 6 cut(s) 124, 193, 229, 256, 303, 391
Bme18I GGWCC 1 cut(s) 272
BmgT120I GGNCC 1 cut(s) 272
BmiI GGNNCC 2 cut(s) 6, 523
BmsI GCATC 2 cut(s) 250, 271
BpiI GAAGAC 1 cut(s) 139
BsaBI GATNNNNATC 1 cut(s) 72
BsaJI CCNNGG 2 cut(s) 8, 549
BsaWI WCCGGW 1 cut(s) 32
Bse3DI GCAATG 1 cut(s) 249
Bse8I GATNNNNATC 1 cut(s) 72
BseDI CCNNGG 2 cut(s) 8, 549
BseGI GGATG 1 cut(s) 29
BseJI GATNNNNATC 1 cut(s) 72
BseMI GCAATG 1 cut(s) 249
BseMII CTCAG 2 cut(s) 94, 420
BseXI GCAGC 5 cut(s) 109, 178, 214, 266, 288
BsgI GTGCAG 1 cut(s) 203
BsiSI CCGG 1 cut(s) 33
BsmAI GTCTC 1 cut(s) 571
BsmBI CGTCTC 1 cut(s) 571
Bsp143I GATC 3 cut(s) 4, 169, 394
BspACI CCGC 5 cut(s) 179, 263, 322, 389, 437
BspCNI CTCAG 2 cut(s) 93, 421
BspLI GGNNCC 2 cut(s) 6, 523
BspPI GGATC 2 cut(s) 12, 389
BspQI GCTCTTC 1 cut(s) 446
BsrBI CCGCTC 1 cut(s) 439
BsrDI GCAATG 1 cut(s) 249
BssECI CCNNGG 2 cut(s) 8, 549
BssMI GATC 3 cut(s) 4, 169, 394
Bst4CI ACNGT 2 cut(s) 365, 530
Bst6I CTCTTC 1 cut(s) 446
BstAPI GCANNNNNTGC 1 cut(s) 260
BstC8I GCNNGC 1 cut(s) 546
BstDEI CTNAG 2 cut(s) 80, 429
BstDSI CCRYGG 1 cut(s) 549
BstF5I GGATG 1 cut(s) 29
BstH2I RGCGCY 2 cut(s) 26, 426
BstHHI GCGC 2 cut(s) 25, 425
BstKTI GATC 3 cut(s) 7, 172, 397
BstMAI GTCTC 1 cut(s) 571
BstMBI GATC 3 cut(s) 4, 169, 394
BstMWI GCNNNNNNNGC 2 cut(s) 260, 545
BstNSI RCATGY 2 cut(s) 62, 548
BstV1I GCAGC 5 cut(s) 109, 178, 214, 266, 288
BstV2I GAAGAC 1 cut(s) 139
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BsuI GTATCC 1 cut(s) 322
BtgI CCRYGG 1 cut(s) 549
BtsCI GGATG 1 cut(s) 29
BtsIMutI CAGTG 2 cut(s) 370, 426
Cac8I GCNNGC 1 cut(s) 546
CfoI GCGC 2 cut(s) 25, 425
Cfr13I GGNCC 1 cut(s) 272
Csp6I GTAC 2 cut(s) 158, 586
CviAII CATG 4 cut(s) 59, 341, 545, 574
CviQI GTAC 2 cut(s) 158, 586
DdeI CTNAG 2 cut(s) 80, 429
DpnI GATC 3 cut(s) 6, 171, 396
DpnII GATC 3 cut(s) 4, 169, 394
Eam1104I CTCTTC 1 cut(s) 446
EarI CTCTTC 1 cut(s) 446
Eco47I GGWCC 1 cut(s) 272
Eco57I CTGAAG 1 cut(s) 306
EcoRI GAATTC 1 cut(s) 128
Esp3I CGTCTC 1 cut(s) 571
FaeI CATG 4 cut(s) 62, 344, 548, 577
FalI AAGNNNNNCTT 2 cut(s) 288, 320
FatI CATG 4 cut(s) 58, 340, 544, 573
FbaI TGATCA 1 cut(s) 169
Fnu4HI GCNGC 6 cut(s) 123, 192, 228, 255, 302, 390
FokI GGATG 1 cut(s) 16
Fsp4HI GCNGC 6 cut(s) 123, 192, 228, 255, 302, 390
FspBI CTAG 1 cut(s) 164
GlaI GCGC 2 cut(s) 24, 424
GluI GCNGC 6 cut(s) 123, 192, 228, 255, 302, 390
HaeII RGCGCY 2 cut(s) 26, 426
HapII CCGG 1 cut(s) 33
HhaI GCGC 2 cut(s) 25, 425
Hin1II CATG 4 cut(s) 62, 344, 548, 577
Hin6I GCGC 2 cut(s) 23, 423
HinP1I GCGC 2 cut(s) 23, 423
HindIII AAGCTT 1 cut(s) 288
HinfI GANTC 1 cut(s) 431
HpaII CCGG 1 cut(s) 33
HphI GGTGA 4 cut(s) 47, 107, 385, 426
Hpy166II GTNNAC 1 cut(s) 272
Hpy188I TCNGA 2 cut(s) 65, 87
Hpy188III TCNNGA 3 cut(s) 49, 151, 398
Hpy8I GTNNAC 1 cut(s) 272
Hpy99I CGWCG 1 cut(s) 530
HpyAV CCTTC 3 cut(s) 319, 512, 519
HpyCH4III ACNGT 2 cut(s) 365, 530
HpyCH4IV ACGT 4 cut(s) 39, 144, 222, 580
HpyCH4V TGCA 3 cut(s) 220, 230, 544
HpyF10VI GCNNNNNNNGC 2 cut(s) 260, 545
HpyF3I CTNAG 2 cut(s) 80, 429
HpySE526I ACGT 4 cut(s) 39, 144, 222, 580
Hsp92II CATG 4 cut(s) 62, 344, 548, 577
HspAI GCGC 2 cut(s) 23, 423
Ksp22I TGATCA 1 cut(s) 169
Kzo9I GATC 3 cut(s) 4, 169, 394
LguI GCTCTTC 1 cut(s) 446
LpnPI CCDG 4 cut(s) 46, 288, 411, 547
Lsp1109I GCAGC 5 cut(s) 109, 178, 214, 266, 288
LweI GCATC 2 cut(s) 250, 271
MaeI CTAG 1 cut(s) 164
MaeII ACGT 4 cut(s) 39, 144, 222, 580
MaeIII GTNAC 5 cut(s) 35, 310, 359, 432, 553
MalI GATC 3 cut(s) 6, 171, 396
MbiI CCGCTC 1 cut(s) 439
MboI GATC 3 cut(s) 4, 169, 394
MboII GAAGA 5 cut(s) 64, 68, 104, 139, 433
MflI RGATCY 1 cut(s) 4
MluCI AATT 5 cut(s) 128, 316, 376, 401, 501
MlyI GAGTC 1 cut(s) 440
MnlI CCTC 4 cut(s) 13, 18, 225, 479
MseI TTAA 2 cut(s) 383, 465
MspA1I CMGCKG 3 cut(s) 181, 257, 278
MspI CCGG 1 cut(s) 33
MwoI GCNNNNNNNGC 2 cut(s) 260, 545
NdeII GATC 3 cut(s) 4, 169, 394
NlaIII CATG 4 cut(s) 62, 344, 548, 577
NlaIV GGNNCC 2 cut(s) 6, 523
NmuCI GTSAC 3 cut(s) 35, 359, 432
NspI RCATGY 2 cut(s) 62, 548
PaeI GCATGC 1 cut(s) 548
PciI ACATGT 1 cut(s) 58
PciSI GCTCTTC 1 cut(s) 446
PkrI GCNGC 6 cut(s) 124, 193, 229, 256, 303, 391
PleI GAGTC 1 cut(s) 439
PpsI GAGTC 1 cut(s) 439
PscI ACATGT 1 cut(s) 58
PspN4I GGNNCC 2 cut(s) 6, 523
PspPI GGNCC 1 cut(s) 272
PsuI RGATCY 1 cut(s) 4
PvuII CAGCTG 2 cut(s) 257, 278
RsaI GTAC 2 cut(s) 159, 587
RsaNI GTAC 2 cut(s) 158, 586
SapI GCTCTTC 1 cut(s) 446
SaqAI TTAA 2 cut(s) 383, 465
SatI GCNGC 6 cut(s) 123, 192, 228, 255, 302, 390
Sau3AI GATC 3 cut(s) 4, 169, 394
Sau96I GGNCC 1 cut(s) 272
SchI GAGTC 1 cut(s) 440
SfaNI GCATC 2 cut(s) 250, 271
SinI GGWCC 1 cut(s) 272
SphI GCATGC 1 cut(s) 548
Sse9I AATT 5 cut(s) 128, 316, 376, 401, 501
SsiI CCGC 5 cut(s) 179, 263, 322, 389, 437
SspMI CTAG 1 cut(s) 164
TaaI ACNGT 2 cut(s) 365, 530
TaiI ACGT 4 cut(s) 42, 147, 225, 583
TasI AATT 5 cut(s) 128, 316, 376, 401, 501
TatI WGTACW 1 cut(s) 585
TauI GCSGC 1 cut(s) 392
Tru1I TTAA 2 cut(s) 383, 465
Tru9I TTAA 2 cut(s) 383, 465
TscAI CASTG 2 cut(s) 370, 433
TseFI GTSAC 3 cut(s) 35, 359, 432
TseI GCWGC 5 cut(s) 122, 191, 227, 254, 301
Tsp45I GTSAC 3 cut(s) 35, 359, 432
TspDTI ATGAA 2 cut(s) 329, 433
TspRI CASTG 2 cut(s) 370, 433
VpaK11BI GGWCC 1 cut(s) 272
XapI RAATTY 3 cut(s) 128, 376, 401
XceI RCATGY 2 cut(s) 62, 548
XspI CTAG 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.