Rh2AG211200

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000319
Physical Location & Seq
Forward (+)
21472819 .. 21479886
7068 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG211200.1

Sequence Viewer

Length: 387 bp
ATGAAAGCCTTGGCAAGGGATTGCAAAGTTGACAAGACTGCAACCAATGATCATCACTCGAAAGCGGTTGATATATATCTTGGTAACAATATTGAACTGTACACCATTGGTAGACGAAGCGTCTTGCATAATTTGGGGAGATCCATCGGTGTGCCAATTTTCCAGCGATATGTGCGCCGTGATTTCATGAAATTGGAATCATCGGAGGAGAAGAATGACTTCATGAAATTAGAATCATCGGAGGAGAAGAAGGCTACATCCACCACAGTGACCATTGCAAACGAGAAATCAGTCAAAGCTTCGCTGGATGACTCGAAAAGATTTGACACAAATCTACTAGTTGCGAAAGACCAGGTTGGCCGTTCTGCCAACGGTGCGGCGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_4 Ank_5 PGG

Protein Analysis

128

Amino Acids

14.34

Weight (kDa)

9.38

Isoelectric Point (pI)

42.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000319)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18590 FvH4_1g18590 FvH4_3g16140 FvH4_3g16141 FvH4_3g16160
malus_domestica MD02G1193600.v1.1 MD04G1020900.v1.1 MD04G1021000.v1.1 MD05G1212100.v1.1 MD05G1212300.v1.1 MD05G1213100.v1.1 MD05G1213400.v1.1 MD10G1197300.v1.1
prunus_persica Prupe.4G144500_v2.0.a1 Prupe.4G144600_v2.0.a1 Prupe.4G144800_v2.0.a1 Prupe.4G144900_v2.0.a1 Prupe.4G145100_v2.0.a1 Prupe.4G145300_v2.0.a1
pyrus_communis pycom02g15730 pycom02g15740 pycom05g19670 pycom05g19680 pycom10g17020 pycom11g27250
rosa_chinensis RchiOBHm_Chr2g0109301 RchiOBHm_Chr2g0109321 RchiOBHm_Chr2g0109341 RchiOBHm_Chr2g0109381 RchiOBHm_Chr3g0482301 RchiOBHm_Chr5g0027111 RchiOBHm_Chr5g0027121 RchiOBHm_Chr5g0027141 RchiOBHm_Chr5g0027181 RchiOBHm_Chr5g0027241
rosa_laevigata RLG00000017731 RLG00000017732 RLG00000032990 RLG00000032992 RLG00000032993 RLG00000032995 RLG00000032997 RLG00000033002
rosa_multiflora Rmu_sc0000135.1_g000002 Rmu_sc0000332.1_g000010 Rmu_sc0000882.1_g000028 Rmu_sc0000882.1_g000032 Rmu_sc0000882.1_g000033 Rmu_sc0000882.1_g000039 Rmu_sc0000882.1_g000043 Rmu_sc0000882.1_g000046 Rmu_sc0006065.1_g000003 Rmu_sc0006065.1_g000012 Rmu_sc0006065.1_g000018 Rmu_sc0006065.1_g000019 Rmu_sc0006065.1_g000022 Rmu_sc0007497.1_g000002 Rmu_sc0013610.1_g000011 Rmu_sc0015338.1_g000006 Rmu_ssc0000357.1_g000035
rosa_roxburghii Rroxscaffold_1G00052250 Rroxscaffold_1G00052280 Rroxscaffold_1G00052290 Rroxscaffold_1G00052310 Rroxscaffold_1G00052330 Rroxscaffold_1G00052360 Rroxscaffold_1G00052380 Rroxscaffold_1G00052390 Rroxscaffold_2G00134310 Rroxscaffold_2G00134330
rosa_rugosa Rorug02G0159400 Rorug05G0097300 Rorug05G0097500 Rorug05G0097600 Rorug05G0097700 Rorug05G0097700 Rorug05G0097700 Rorug05G0122900
rosa_samantha Rh2AG210900 Rh2AG211200 Rh2AG211500 Rh2BG221200 Rh2BG221800 Rh2CG213100 Rh2CG213200 Rh2CG213600 Rh3CG277900 Rh3CG278000 Rh3CG278600 Rh3DG274600 Rh5BG188600 Rh5BG188700 Rh5BG188900 Rh5BG189100 Rh5BG189200 Rh5BG189400 Rh5CG208400 Rh5CG208500 Rh5CG208700 Rh5CG209000 Rh5CG209100 Rh5CG209400 Rh5CG209700 Rh5CG209800 Rh5CG209900 Rh5CG210000 Rh5DG190500 Rh5DG190700 Rh5DG191200 Rh5DG191500
rosa_wichuraiana Rw3G022160 Rw5G017410 Rw5G017420 Rw5G017450 Rw5G017460 Rw5G017470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 112
AciI CCGC 2 cut(s) 65, 377
AclWI GGATC 1 cut(s) 135
AcoI YGGCCR 1 cut(s) 358
AfaI GTAC 1 cut(s) 101
AfiI CCNNNNNNNGG 1 cut(s) 15
AgsI TTSAA 1 cut(s) 95
AhdI GACNNNNNGTC 1 cut(s) 119
AhlI ACTAGT 1 cut(s) 337
AjnI CCWGG 1 cut(s) 351
AleI CACNNNNGTG 1 cut(s) 266
AluBI AGCT 1 cut(s) 299
AluI AGCT 1 cut(s) 299
AlwI GGATC 1 cut(s) 135
AoxI GGCC 1 cut(s) 358
Asp700I GAANNNNTTC 1 cut(s) 218
AspLEI GCGC 1 cut(s) 177
BccI CCATC 1 cut(s) 152
BceAI ACGGC 2 cut(s) 162, 345
BciT130I CCWGG 1 cut(s) 353
BclI TGATCA 1 cut(s) 49
BcuI ACTAGT 1 cut(s) 337
BfaI CTAG 1 cut(s) 338
BisI GCNGC 1 cut(s) 378
BlsI GCNGC 1 cut(s) 379
Bme1390I CCNGG 1 cut(s) 353
BmeRI GACNNNNNGTC 1 cut(s) 119
BmrFI CCNGG 1 cut(s) 353
BsaBI GATNNNNATC 1 cut(s) 75
BsaJI CCNNGG 1 cut(s) 9
Bsc4I CCNNNNNNNGG 1 cut(s) 15
Bse3DI GCAATG 1 cut(s) 273
Bse8I GATNNNNATC 1 cut(s) 75
BseBI CCWGG 1 cut(s) 353
BseDI CCNNGG 1 cut(s) 9
BseGI GGATG 2 cut(s) 257, 313
BseJI GATNNNNATC 1 cut(s) 75
BseLI CCNNNNNNNGG 1 cut(s) 15
BseMI GCAATG 1 cut(s) 273
BseRI GAGGAG 2 cut(s) 221, 257
BshFI GGCC 1 cut(s) 360
BslI CCNNNNNNNGG 1 cut(s) 15
BsnI GGCC 1 cut(s) 360
Bsp1407I TGTACA 1 cut(s) 99
Bsp143I GATC 2 cut(s) 49, 140
BspACI CCGC 2 cut(s) 65, 377
BspANI GGCC 1 cut(s) 360
BspHI TCATGA 2 cut(s) 186, 222
BspPI GGATC 1 cut(s) 135
BsrDI GCAATG 1 cut(s) 273
BsrGI TGTACA 1 cut(s) 99
BssECI CCNNGG 1 cut(s) 9
BssMI GATC 2 cut(s) 49, 140
BssT1I CCWWGG 1 cut(s) 9
Bst2UI CCWGG 1 cut(s) 353
Bst4CI ACNGT 3 cut(s) 99, 268, 374
BstAUI TGTACA 1 cut(s) 99
BstENI CCTNNNNNAGG 1 cut(s) 13
BstF5I GGATG 2 cut(s) 257, 313
BstHHI GCGC 1 cut(s) 177
BstKTI GATC 2 cut(s) 52, 143
BstMBI GATC 2 cut(s) 49, 140
BstMWI GCNNNNNNNGC 2 cut(s) 172, 374
BstNI CCWGG 1 cut(s) 353
BstSCI CCNGG 1 cut(s) 351
BstX2I RGATCY 1 cut(s) 140
BstYI RGATCY 1 cut(s) 140
BsuRI GGCC 1 cut(s) 360
BtsCI GGATG 2 cut(s) 257, 313
BtsIMutI CAGTG 1 cut(s) 273
CciI TCATGA 2 cut(s) 186, 222
CfoI GCGC 1 cut(s) 177
CseI GACGC 1 cut(s) 109
CsiI ACCWGGT 1 cut(s) 351
Csp6I GTAC 1 cut(s) 100
CviAII CATG 2 cut(s) 187, 223
CviJI RGCY 4 cut(s) 8, 254, 299, 360
CviKI_1 RGCY 4 cut(s) 8, 254, 299, 360
CviQI GTAC 1 cut(s) 100
DpnI GATC 2 cut(s) 51, 142
DpnII GATC 2 cut(s) 49, 140
DriI GACNNNNNGTC 1 cut(s) 119
EaeI YGGCCR 1 cut(s) 358
Eam1105I GACNNNNNGTC 1 cut(s) 119
Eco130I CCWWGG 1 cut(s) 9
EcoNI CCTNNNNNAGG 1 cut(s) 13
EcoRII CCWGG 1 cut(s) 351
EcoT14I CCWWGG 1 cut(s) 9
ErhI CCWWGG 1 cut(s) 9
FaeI CATG 2 cut(s) 190, 226
FaiI YATR 6 cut(s) 74, 76, 129, 171, 188, 224
FalI AAGNNNNNCTT 2 cut(s) 203, 235
FatI CATG 2 cut(s) 186, 222
FbaI TGATCA 1 cut(s) 49
FblI GTMKAC 1 cut(s) 112
Fnu4HI GCNGC 1 cut(s) 378
FokI GGATG 2 cut(s) 244, 320
Fsp4HI GCNGC 1 cut(s) 378
FspBI CTAG 1 cut(s) 338
GlaI GCGC 1 cut(s) 176
GluI GCNGC 1 cut(s) 378
HaeIII GGCC 1 cut(s) 360
HgaI GACGC 1 cut(s) 109
HhaI GCGC 1 cut(s) 177
Hin1II CATG 2 cut(s) 190, 226
Hin6I GCGC 1 cut(s) 175
HinP1I GCGC 1 cut(s) 175
HincII GTYRAC 1 cut(s) 31
HindII GTYRAC 1 cut(s) 31
HindIII AAGCTT 1 cut(s) 297
HinfI GANTC 3 cut(s) 197, 233, 311
Hpy166II GTNNAC 3 cut(s) 31, 102, 113
Hpy188I TCNGA 2 cut(s) 205, 241
Hpy188III TCNNGA 2 cut(s) 187, 223
Hpy8I GTNNAC 3 cut(s) 31, 102, 113
HpyAV CCTTC 1 cut(s) 244
HpyCH4III ACNGT 3 cut(s) 99, 268, 374
HpyCH4V TGCA 4 cut(s) 24, 41, 127, 278
HpyF10VI GCNNNNNNNGC 2 cut(s) 172, 374
Hsp92II CATG 2 cut(s) 190, 226
HspAI GCGC 1 cut(s) 175
Ksp22I TGATCA 1 cut(s) 49
Kzo9I GATC 2 cut(s) 49, 140
LpnPI CCDG 4 cut(s) 176, 290, 338, 365
MabI ACCWGGT 1 cut(s) 351
MaeI CTAG 1 cut(s) 338
MaeIII GTNAC 2 cut(s) 83, 268
MalI GATC 2 cut(s) 51, 142
MboI GATC 2 cut(s) 49, 140
MboII GAAGA 2 cut(s) 223, 259
MflI RGATCY 1 cut(s) 140
MluCI AATT 4 cut(s) 130, 156, 191, 227
MlyI GAGTC 1 cut(s) 305
MnlI CCTC 2 cut(s) 199, 235
MroXI GAANNNNTTC 1 cut(s) 218
MslI CAYNNNNRTG 2 cut(s) 149, 266
MspR9I CCNGG 1 cut(s) 353
MvaI CCWGG 1 cut(s) 353
MwoI GCNNNNNNNGC 2 cut(s) 172, 374
NdeII GATC 2 cut(s) 49, 140
NlaIII CATG 2 cut(s) 190, 226
NmuCI GTSAC 1 cut(s) 268
OliI CACNNNNGTG 1 cut(s) 266
PagI TCATGA 2 cut(s) 186, 222
PdmI GAANNNNTTC 1 cut(s) 218
PfeI GAWTC 2 cut(s) 197, 233
PkrI GCNGC 1 cut(s) 379
PleI GAGTC 1 cut(s) 305
PpsI GAGTC 1 cut(s) 305
Psp6I CCWGG 1 cut(s) 351
PspGI CCWGG 1 cut(s) 351
PsuI RGATCY 1 cut(s) 140
RsaI GTAC 1 cut(s) 101
RsaNI GTAC 1 cut(s) 100
RseI CAYNNNNRTG 2 cut(s) 149, 266
SatI GCNGC 1 cut(s) 378
Sau3AI GATC 2 cut(s) 49, 140
SchI GAGTC 1 cut(s) 305
ScrFI CCNGG 1 cut(s) 353
SetI ASST 2 cut(s) 301, 357
SexAI ACCWGGT 1 cut(s) 351
SmiMI CAYNNNNRTG 2 cut(s) 149, 266
SpeI ACTAGT 1 cut(s) 337
Sse9I AATT 4 cut(s) 130, 156, 191, 227
SsiI CCGC 2 cut(s) 65, 377
SspI AATATT 1 cut(s) 91
SspMI CTAG 1 cut(s) 338
StyD4I CCNGG 1 cut(s) 351
StyI CCWWGG 1 cut(s) 9
TaaI ACNGT 3 cut(s) 99, 268, 374
TaqI TCGA 2 cut(s) 59, 314
TasI AATT 4 cut(s) 130, 156, 191, 227
TatI WGTACW 1 cut(s) 99
TauI GCSGC 1 cut(s) 380
TfiI GAWTC 2 cut(s) 197, 233
TscAI CASTG 1 cut(s) 273
TseFI GTSAC 1 cut(s) 268
Tsp45I GTSAC 1 cut(s) 268
TspDTI ATGAA 5 cut(s) 17, 175, 203, 211, 239
TspRI CASTG 1 cut(s) 273
XagI CCTNNNNNAGG 1 cut(s) 13
XmiI GTMKAC 1 cut(s) 112
XmnI GAANNNNTTC 1 cut(s) 218
XspI CTAG 1 cut(s) 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.