Rh5CG209700

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000319
Physical Location & Seq
Forward (+)
21206616 .. 21209061
2446 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG209700.1

Sequence Viewer

Length: 1098 bp
ATGGATCCTTACCTGTATGAGGCGGCGACGCTCGGAGATGTCAGCTTCTTGAGAAGAATCAGAGACGGTGACGTATTACTGAACCACGATCTTCTCCTTCAGAAAACGCCTAAAGACAACAACATTCTACACATCGCCGCCGAATTCAAACACAATGAATTTTTCGGACAAGTCCCGAATCACTATTCTCCAGCTCTGTTTTGGGCGGCCAACAAAAAGGGCGACACTCCTCTGCATGTGGCCGCTAGAGTAGGCTGTGATAAAATAGTCAAGTTCCTTATCGATCAGGCGAAAGCGCTGCACATAAGAGGAGCTGATGAGGAAAGCTGTCATCGAAGGCCGCTACTTCGGATGACGAATATAGAAATGGATACGGCTCTGCATGTGGCTGTGCGGTACGGTCATCTTGGAGTGGTGGTTATGTTAATGGAAGCCGATCCTGAACTGTGTTGTTTGACTAACAGGGCAGATGAATCGGTTTTGTTCTTGGCTGCTAGGAAGGGGTCTGCAGAGATAGCTCTTTATCTGTTGAACAAGTCTCCGGTGTGTCCTTCTTTTCGAGGGACGAATGGTGTGACGGCTTTGCACGCCGCTGTAACTCGCAGCAACCTCACCAGCGAAGGCATTGTGAGGACTATGGTGTCCAAAAATCCTAAGATGATTAAAAACGTCGATGCACTTGGCTGGTCACCGTTACACTATGCAGCATTTAGAGGGAACCTTGAAGCGACTAGAGTGCTAATGCAATGTGATAGTTCTGCATCTTACATCTTAGACAACTCTGGAATGTCAGCTCTCCATGTAGCATCCCATGCGGGCCACACCAAGATAATGAAAGAACTAATTCGGTGGCGGCCTGATATTTGTGATCTGTTGAATGACAAAGGCCAAACGGCTTTACATGTGGCAGTATTAGGAGCACGAATTAATGTTGTGGAGTACATATTGAAGACGCCTAAGCTCGCAGCGATTATAAACGAAGCAGATAAAGATGGAAACACTCCTTTGCACTTGGCTGCCCTTCAGCAAAATGATAAAATCATCAGAGTTCTGTCAGGCAATCGTAGAGTATGTAACACACCAAATACTAAGCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_4 Ank_5 PGG

Protein Analysis

365

Amino Acids

40.37

Weight (kDa)

8.83

Isoelectric Point (pI)

37.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 28 - 96 3.8e-07 Ankyrin repeats (3 copies)
Ank_2 PF12796 71 - 146 7.8e-09 Ankyrin repeats (3 copies)
Ank_2 PF12796 122 - 179 1.1e-06 Ankyrin repeats (3 copies)
Ank_2 PF12796 127 - 216 1.5e-09 Ankyrin repeats (3 copies)
Ank_2 PF12796 161 - 250 1e-11 Ankyrin repeats (3 copies)
Ank_2 PF12796 209 - 283 4.1e-11 Ankyrin repeats (3 copies)
Ank_4 PF13637 266 - 315 2.5e-06 Ankyrin repeats (many copies)
Ank_2 PF12796 289 - 353 2.6e-10 Ankyrin repeats (3 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000319)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18590 FvH4_1g18590 FvH4_3g16140 FvH4_3g16141 FvH4_3g16160
malus_domestica MD02G1193600.v1.1 MD04G1020900.v1.1 MD04G1021000.v1.1 MD05G1212100.v1.1 MD05G1212300.v1.1 MD05G1213100.v1.1 MD05G1213400.v1.1 MD10G1197300.v1.1
prunus_persica Prupe.4G144500_v2.0.a1 Prupe.4G144600_v2.0.a1 Prupe.4G144800_v2.0.a1 Prupe.4G144900_v2.0.a1 Prupe.4G145100_v2.0.a1 Prupe.4G145300_v2.0.a1
pyrus_communis pycom02g15730 pycom02g15740 pycom05g19670 pycom05g19680 pycom10g17020 pycom11g27250
rosa_chinensis RchiOBHm_Chr2g0109301 RchiOBHm_Chr2g0109321 RchiOBHm_Chr2g0109341 RchiOBHm_Chr2g0109381 RchiOBHm_Chr3g0482301 RchiOBHm_Chr5g0027111 RchiOBHm_Chr5g0027121 RchiOBHm_Chr5g0027141 RchiOBHm_Chr5g0027181 RchiOBHm_Chr5g0027241
rosa_laevigata RLG00000017731 RLG00000017732 RLG00000032990 RLG00000032992 RLG00000032993 RLG00000032995 RLG00000032997 RLG00000033002
rosa_multiflora Rmu_sc0000135.1_g000002 Rmu_sc0000332.1_g000010 Rmu_sc0000882.1_g000028 Rmu_sc0000882.1_g000032 Rmu_sc0000882.1_g000033 Rmu_sc0000882.1_g000039 Rmu_sc0000882.1_g000043 Rmu_sc0000882.1_g000046 Rmu_sc0006065.1_g000003 Rmu_sc0006065.1_g000012 Rmu_sc0006065.1_g000018 Rmu_sc0006065.1_g000019 Rmu_sc0006065.1_g000022 Rmu_sc0007497.1_g000002 Rmu_sc0013610.1_g000011 Rmu_sc0015338.1_g000006 Rmu_ssc0000357.1_g000035
rosa_roxburghii Rroxscaffold_1G00052250 Rroxscaffold_1G00052280 Rroxscaffold_1G00052290 Rroxscaffold_1G00052310 Rroxscaffold_1G00052330 Rroxscaffold_1G00052360 Rroxscaffold_1G00052380 Rroxscaffold_1G00052390 Rroxscaffold_2G00134310 Rroxscaffold_2G00134330
rosa_rugosa Rorug02G0159400 Rorug05G0097300 Rorug05G0097500 Rorug05G0097600 Rorug05G0097700 Rorug05G0097700 Rorug05G0097700 Rorug05G0122900
rosa_samantha Rh2AG210900 Rh2AG211200 Rh2AG211500 Rh2BG221200 Rh2BG221800 Rh2CG213100 Rh2CG213200 Rh2CG213600 Rh3CG277900 Rh3CG278000 Rh3CG278600 Rh3DG274600 Rh5BG188600 Rh5BG188700 Rh5BG188900 Rh5BG189100 Rh5BG189200 Rh5BG189400 Rh5CG208400 Rh5CG208500 Rh5CG208700 Rh5CG209000 Rh5CG209100 Rh5CG209400 Rh5CG209700 Rh5CG209800 Rh5CG209900 Rh5CG210000 Rh5DG190500 Rh5DG190700 Rh5DG191200 Rh5DG191500
rosa_wichuraiana Rw3G022160 Rw5G017410 Rw5G017420 Rw5G017450 Rw5G017460 Rw5G017470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 974
AasI GACNNNNNNGTC 1 cut(s) 640
AciI CCGC 9 cut(s) 23, 138, 206, 243, 341, 394, 591, 815, 853
AclWI GGATC 2 cut(s) 12, 431
AcoI YGGCCR 2 cut(s) 207, 240
AcsI RAATTY 2 cut(s) 143, 158
AcuI CTGAAG 2 cut(s) 83, 1007
AcyI GRCGYC 1 cut(s) 953
AfaI GTAC 2 cut(s) 398, 941
AfeI AGCGCT 1 cut(s) 297
AfiI CCNNNNNNNGG 1 cut(s) 19
AflIII ACRYGT 1 cut(s) 901
AgsI TTSAA 5 cut(s) 148, 532, 725, 877, 949
AluBI AGCT 7 cut(s) 45, 194, 314, 327, 518, 794, 961
AluI AGCT 7 cut(s) 45, 194, 314, 327, 518, 794, 961
Alw21I GWGCWC 1 cut(s) 922
Alw26I GTCTC 2 cut(s) 57, 543
AlwI GGATC 2 cut(s) 12, 431
Aor51HI AGCGCT 1 cut(s) 297
AoxI GGCC 6 cut(s) 207, 240, 338, 817, 854, 886
ApeKI GCWGC 6 cut(s) 298, 491, 603, 704, 965, 1016
ApoI RAATTY 2 cut(s) 143, 158
AseI ATTAAT 1 cut(s) 927
Asp700I GAANNNNTTC 1 cut(s) 843
AspLEI GCGC 1 cut(s) 298
AspS9I GGNCC 1 cut(s) 817
AsuHPI GGTGA 3 cut(s) 80, 604, 681
BamHI GGATCC 1 cut(s) 4
BbsI GAAGAC 1 cut(s) 956
Bbv12I GWGCWC 1 cut(s) 922
BbvI GCAGC 6 cut(s) 285, 478, 615, 716, 977, 1003
BccI CCATC 1 cut(s) 986
BceAI ACGGC 3 cut(s) 390, 594, 909
BcgI CGANNNNNNTGC 6 cut(s) 280, 314, 456, 490, 718, 752
BciVI GTATCC 1 cut(s) 364
BcoDI GTCTC 2 cut(s) 57, 543
BfaI CTAG 3 cut(s) 246, 495, 732
BfmI CTRYAG 1 cut(s) 507
BfoI RGCGCY 1 cut(s) 299
BfuI GTATCC 1 cut(s) 364
BmgT120I GGNCC 1 cut(s) 817
BmiI GGNNCC 2 cut(s) 6, 719
BmsI GCATC 3 cut(s) 664, 770, 815
BpiI GAAGAC 1 cut(s) 956
BpmI CTGGAG 1 cut(s) 174
Bpu10I CCTNAGC 1 cut(s) 957
BpuEI CTTGAG 1 cut(s) 70
Bsa29I ATCGAT 1 cut(s) 282
BsaHI GRCGYC 1 cut(s) 953
BsaWI WCCGGW 1 cut(s) 541
BsaXI ACNNNNNCTCC 2 cut(s) 402, 432
Bsc4I CCNNNNNNNGG 1 cut(s) 19
Bse3DI GCAATG 1 cut(s) 752
BseCI ATCGAT 1 cut(s) 282
BseGI GGATG 2 cut(s) 357, 806
BseLI CCNNNNNNNGG 1 cut(s) 19
BseMI GCAATG 1 cut(s) 752
BseRI GAGGAG 2 cut(s) 219, 324
BseXI GCAGC 6 cut(s) 285, 478, 615, 716, 977, 1003
BsgI GTGCAG 1 cut(s) 284
BshFI GGCC 6 cut(s) 209, 242, 340, 819, 856, 888
BshVI ATCGAT 1 cut(s) 282
BsiHKAI GWGCWC 1 cut(s) 922
BsiSI CCGG 1 cut(s) 542
BslFI GGGAC 2 cut(s) 158, 577
BslI CCNNNNNNNGG 1 cut(s) 19
BsmAI GTCTC 2 cut(s) 57, 543
BsmBI CGTCTC 1 cut(s) 57
BsmFI GGGAC 2 cut(s) 158, 577
BsnI GGCC 6 cut(s) 209, 242, 340, 819, 856, 888
Bsp1286I GDGCHC 1 cut(s) 922
Bsp143I GATC 5 cut(s) 4, 88, 283, 436, 868
BspACI CCGC 9 cut(s) 23, 138, 206, 243, 341, 394, 591, 815, 853
BspANI GGCC 6 cut(s) 209, 242, 340, 819, 856, 888
BspDI ATCGAT 1 cut(s) 282
BspLI GGNNCC 2 cut(s) 6, 719
BspMAI CTGCAG 1 cut(s) 511
BspPI GGATC 2 cut(s) 12, 431
BsrDI GCAATG 1 cut(s) 752
BssMI GATC 5 cut(s) 4, 88, 283, 436, 868
BssNI GRCGYC 1 cut(s) 953
Bst4CI ACNGT 4 cut(s) 68, 401, 447, 693
BstACI GRCGYC 1 cut(s) 953
BstAPI GCANNNNNTGC 1 cut(s) 812
BstC8I GCNNGC 3 cut(s) 588, 817, 963
BstDEI CTNAG 4 cut(s) 654, 772, 957, 1089
BstEII GGTNACC 1 cut(s) 687
BstENI CCTNNNNNAGG 1 cut(s) 17
BstF5I GGATG 2 cut(s) 357, 806
BstH2I RGCGCY 1 cut(s) 299
BstHHI GCGC 1 cut(s) 298
BstKTI GATC 5 cut(s) 7, 91, 286, 439, 871
BstMAI GTCTC 2 cut(s) 57, 543
BstMBI GATC 5 cut(s) 4, 88, 283, 436, 868
BstMWI GCNNNNNNNGC 3 cut(s) 515, 587, 812
BstNSI RCATGY 3 cut(s) 239, 386, 905
BstPI GGTNACC 1 cut(s) 687
BstSFI CTRYAG 1 cut(s) 507
BstV1I GCAGC 6 cut(s) 285, 478, 615, 716, 977, 1003
BstV2I GAAGAC 1 cut(s) 956
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
Bsu15I ATCGAT 1 cut(s) 282
BsuI GTATCC 1 cut(s) 364
BsuRI GGCC 6 cut(s) 209, 242, 340, 819, 856, 888
BsuTUI ATCGAT 1 cut(s) 282
BtgZI GCGATG 1 cut(s) 118
BtsCI GGATG 2 cut(s) 357, 806
Cac8I GCNNGC 3 cut(s) 588, 817, 963
CfoI GCGC 1 cut(s) 298
Cfr13I GGNCC 1 cut(s) 817
ClaI ATCGAT 1 cut(s) 282
CseI GACGC 2 cut(s) 37, 961
Csp6I GTAC 2 cut(s) 397, 940
CviAII CATG 5 cut(s) 236, 383, 800, 812, 902
CviQI GTAC 2 cut(s) 397, 940
DdeI CTNAG 4 cut(s) 654, 772, 957, 1089
DpnI GATC 5 cut(s) 6, 90, 285, 438, 870
DpnII GATC 5 cut(s) 4, 88, 283, 436, 868
DrdI GACNNNNNNGTC 1 cut(s) 640
DseDI GACNNNNNNGTC 1 cut(s) 640
EaeI YGGCCR 2 cut(s) 207, 240
Eco47III AGCGCT 1 cut(s) 297
Eco57I CTGAAG 2 cut(s) 83, 1007
Eco91I GGTNACC 1 cut(s) 687
EcoNI CCTNNNNNAGG 1 cut(s) 17
EcoO65I GGTNACC 1 cut(s) 687
EcoRI GAATTC 1 cut(s) 143
Esp3I CGTCTC 1 cut(s) 57
FaeI CATG 5 cut(s) 239, 386, 803, 815, 905
FaqI GGGAC 2 cut(s) 158, 577
FatI CATG 5 cut(s) 235, 382, 799, 811, 901
FauI CCCGC 1 cut(s) 808
FokI GGATG 2 cut(s) 364, 793
FspBI CTAG 3 cut(s) 246, 495, 732
GlaI GCGC 1 cut(s) 297
GsuI CTGGAG 1 cut(s) 174
HaeII RGCGCY 1 cut(s) 299
HaeIII GGCC 6 cut(s) 209, 242, 340, 819, 856, 888
HapII CCGG 1 cut(s) 542
HgaI GACGC 2 cut(s) 37, 961
HhaI GCGC 1 cut(s) 298
Hin1I GRCGYC 1 cut(s) 953
Hin1II CATG 5 cut(s) 239, 386, 803, 815, 905
Hin6I GCGC 1 cut(s) 296
HinP1I GCGC 1 cut(s) 296
HinfI GANTC 3 cut(s) 57, 178, 473
HpaII CCGG 1 cut(s) 542
HphI GGTGA 3 cut(s) 80, 604, 681
Hpy188I TCNGA 6 cut(s) 35, 62, 102, 167, 351, 1046
Hpy188III TCNNGA 4 cut(s) 49, 175, 440, 783
Hpy99I CGWCG 2 cut(s) 31, 674
HpyAV CCTTC 6 cut(s) 107, 330, 493, 561, 614, 1031
HpyCH4III ACNGT 4 cut(s) 68, 401, 447, 693
HpyCH4IV ACGT 2 cut(s) 72, 669
HpyF10VI GCNNNNNNNGC 3 cut(s) 515, 587, 812
HpyF3I CTNAG 4 cut(s) 654, 772, 957, 1089
HpySE526I ACGT 2 cut(s) 72, 669
Hsp92I GRCGYC 1 cut(s) 953
Hsp92II CATG 5 cut(s) 239, 386, 803, 815, 905
HspAI GCGC 1 cut(s) 296
Kzo9I GATC 5 cut(s) 4, 88, 283, 436, 868
LmnI GCTCC 2 cut(s) 311, 917
Lsp1109I GCAGC 6 cut(s) 285, 478, 615, 716, 977, 1003
LweI GCATC 3 cut(s) 664, 770, 815
MaeI CTAG 3 cut(s) 246, 495, 732
MaeII ACGT 2 cut(s) 72, 669
MaeIII GTNAC 6 cut(s) 68, 574, 595, 687, 693, 1073
MalI GATC 5 cut(s) 6, 90, 285, 438, 870
MboI GATC 5 cut(s) 4, 88, 283, 436, 868
MboII GAAGA 3 cut(s) 66, 83, 961
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 1 cut(s) 922
MluCI AATT 4 cut(s) 143, 158, 843, 924
MnlI CCTC 8 cut(s) 13, 240, 302, 313, 554, 620, 624, 707
MroXI GAANNNNTTC 1 cut(s) 843
MseI TTAA 4 cut(s) 425, 663, 927, 1096
MspA1I CMGCKG 1 cut(s) 593
MspI CCGG 1 cut(s) 542
MwoI GCNNNNNNNGC 3 cut(s) 515, 587, 812
NdeII GATC 5 cut(s) 4, 88, 283, 436, 868
NlaIII CATG 5 cut(s) 239, 386, 803, 815, 905
NlaIV GGNNCC 2 cut(s) 6, 719
NmuCI GTSAC 3 cut(s) 68, 574, 687
NspI RCATGY 3 cut(s) 239, 386, 905
PciI ACATGT 1 cut(s) 901
PdmI GAANNNNTTC 1 cut(s) 843
PfeI GAWTC 3 cut(s) 57, 178, 473
PscI ACATGT 1 cut(s) 901
PshBI ATTAAT 1 cut(s) 927
PsiI TTATAA 1 cut(s) 974
PspEI GGTNACC 1 cut(s) 687
PspN4I GGNNCC 2 cut(s) 6, 719
PspPI GGNCC 1 cut(s) 817
PstI CTGCAG 1 cut(s) 511
PsuI RGATCY 1 cut(s) 4
RsaI GTAC 2 cut(s) 398, 941
RsaNI GTAC 2 cut(s) 397, 940
SaqAI TTAA 4 cut(s) 425, 663, 927, 1096
Sau3AI GATC 5 cut(s) 4, 88, 283, 436, 868
Sau96I GGNCC 1 cut(s) 817
SduI GDGCHC 1 cut(s) 922
SfaNI GCATC 3 cut(s) 664, 770, 815
SfcI CTRYAG 1 cut(s) 507
SmlI CTYRAG 1 cut(s) 49
SmoI CTYRAG 1 cut(s) 49
Sse9I AATT 4 cut(s) 143, 158, 843, 924
SsiI CCGC 9 cut(s) 23, 138, 206, 243, 341, 394, 591, 815, 853
SspMI CTAG 3 cut(s) 246, 495, 732
TaaI ACNGT 4 cut(s) 68, 401, 447, 693
TaiI ACGT 2 cut(s) 75, 672
TaqI TCGA 4 cut(s) 282, 334, 559, 672
TasI AATT 4 cut(s) 143, 158, 843, 924
TatI WGTACW 1 cut(s) 939
TauI GCSGC 7 cut(s) 26, 140, 209, 245, 343, 593, 856
TfiI GAWTC 3 cut(s) 57, 178, 473
Tru1I TTAA 4 cut(s) 425, 663, 927, 1096
Tru9I TTAA 4 cut(s) 425, 663, 927, 1096
TseFI GTSAC 3 cut(s) 68, 574, 687
TseI GCWGC 6 cut(s) 298, 491, 603, 704, 965, 1016
Tsp45I GTSAC 3 cut(s) 68, 574, 687
TspDTI ATGAA 3 cut(s) 171, 486, 848
VspI ATTAAT 1 cut(s) 927
XagI CCTNNNNNAGG 1 cut(s) 17
XapI RAATTY 2 cut(s) 143, 158
XceI RCATGY 3 cut(s) 239, 386, 905
XcmI CCANNNNNNNNNTGG 1 cut(s) 198
XmnI GAANNNNTTC 1 cut(s) 843
XspI CTAG 3 cut(s) 246, 495, 732
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.