RchiOBHm_Chr2g0109341

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000319
Physical Location & Seq
Forward (+)
20723788 .. 20724543
756 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ48317

Sequence Viewer

Length: 756 bp
ATGAAATTGGAATCATCGGAGGAGAAGAATGACTTCATGAAATTAGAATCATCGAAGGAGAAGAAGGCTACATCCACCACAGTGACCATTGCAAACGAAAAATCAGTCAAAGCTTCGCTGGATGACTCGAAAAGATTTGACACAAATCTACTAGTTGCGGTGCTTATTGCTACCGTCAGTTTTTCAGCCGCTTTCACCATGCCTGGGGGATTTAATAGCGACGGCATGTCAGTATTACACCAAAGGATATTTTTCATAGGGTTCGTGTTGTTTGACACCATCTCCTACTTCTTGTCCCTCCTTGTGGTGTATAATCATTTTATGGTGTCGAATAAGTCACGAATCATTAGAGACACACCTGCAGTTTTCATTCGCTATTCCATTGTAGCAATGGTGTTGGCATTTGCTTCGGGTATGTTTGTAGTGCTACCCAAGTATAGTCCACTCGGCATTTTGGTTATTCTAATATGCATCGCTTTATGCTACATGATCATCAGAAAGACCAGGTTGGCCGTTCTGCCAACGGTGCGCGAAATGAGGACACGCGATTGGATCCGTTCCCGCATAATTTTAATGGGGGGAAGTTCCTCCAACAACTCTATTTTGGTGCTTTCTTTTCTAAGCTTAAACATATGTGTACGCATACCACAGTACGTCCTCGGTACCCTGTATCGCCAGTATCAGAGACAATGTCCCAGGATCATGTACGATGTTTCTTATAGAATAACTTTCCAAGTAGTCTTCTCATTAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_4 Ank_5 PGG

Protein Analysis

251

Amino Acids

28.52

Weight (kDa)

9.79

Isoelectric Point (pI)

35.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGG PF13962 45 - 142 9.4e-19 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000319)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18590 FvH4_1g18590 FvH4_3g16140 FvH4_3g16141 FvH4_3g16160
malus_domestica MD02G1193600.v1.1 MD04G1020900.v1.1 MD04G1021000.v1.1 MD05G1212100.v1.1 MD05G1212300.v1.1 MD05G1213100.v1.1 MD05G1213400.v1.1 MD10G1197300.v1.1
prunus_persica Prupe.4G144500_v2.0.a1 Prupe.4G144600_v2.0.a1 Prupe.4G144800_v2.0.a1 Prupe.4G144900_v2.0.a1 Prupe.4G145100_v2.0.a1 Prupe.4G145300_v2.0.a1
pyrus_communis pycom02g15730 pycom02g15740 pycom05g19670 pycom05g19680 pycom10g17020 pycom11g27250
rosa_chinensis RchiOBHm_Chr2g0109301 RchiOBHm_Chr2g0109321 RchiOBHm_Chr2g0109341 RchiOBHm_Chr2g0109381 RchiOBHm_Chr3g0482301 RchiOBHm_Chr5g0027111 RchiOBHm_Chr5g0027121 RchiOBHm_Chr5g0027141 RchiOBHm_Chr5g0027181 RchiOBHm_Chr5g0027241
rosa_laevigata RLG00000017731 RLG00000017732 RLG00000032990 RLG00000032992 RLG00000032993 RLG00000032995 RLG00000032997 RLG00000033002
rosa_multiflora Rmu_sc0000135.1_g000002 Rmu_sc0000332.1_g000010 Rmu_sc0000882.1_g000028 Rmu_sc0000882.1_g000032 Rmu_sc0000882.1_g000033 Rmu_sc0000882.1_g000039 Rmu_sc0000882.1_g000043 Rmu_sc0000882.1_g000046 Rmu_sc0006065.1_g000003 Rmu_sc0006065.1_g000012 Rmu_sc0006065.1_g000018 Rmu_sc0006065.1_g000019 Rmu_sc0006065.1_g000022 Rmu_sc0007497.1_g000002 Rmu_sc0013610.1_g000011 Rmu_sc0015338.1_g000006 Rmu_ssc0000357.1_g000035
rosa_roxburghii Rroxscaffold_1G00052250 Rroxscaffold_1G00052280 Rroxscaffold_1G00052290 Rroxscaffold_1G00052310 Rroxscaffold_1G00052330 Rroxscaffold_1G00052360 Rroxscaffold_1G00052380 Rroxscaffold_1G00052390 Rroxscaffold_2G00134310 Rroxscaffold_2G00134330
rosa_rugosa Rorug02G0159400 Rorug05G0097300 Rorug05G0097500 Rorug05G0097600 Rorug05G0097700 Rorug05G0097700 Rorug05G0097700 Rorug05G0122900
rosa_samantha Rh2AG210900 Rh2AG211200 Rh2AG211500 Rh2BG221200 Rh2BG221800 Rh2CG213100 Rh2CG213200 Rh2CG213600 Rh3CG277900 Rh3CG278000 Rh3CG278600 Rh3DG274600 Rh5BG188600 Rh5BG188700 Rh5BG188900 Rh5BG189100 Rh5BG189200 Rh5BG189400 Rh5CG208400 Rh5CG208500 Rh5CG208700 Rh5CG209000 Rh5CG209100 Rh5CG209400 Rh5CG209700 Rh5CG209800 Rh5CG209900 Rh5CG210000 Rh5DG190500 Rh5DG190700 Rh5DG191200 Rh5DG191500
rosa_wichuraiana Rw3G022160 Rw5G017410 Rw5G017420 Rw5G017450 Rw5G017460 Rw5G017470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 367
Acc36I ACCTGC 1 cut(s) 367
Acc65I GGTACC 1 cut(s) 662
AccB1I GGYRCC 1 cut(s) 662
AccII CGCG 2 cut(s) 531, 546
AciI CCGC 3 cut(s) 158, 189, 562
AclWI GGATC 3 cut(s) 547, 560, 707
AcoI YGGCCR 1 cut(s) 510
AfaI GTAC 4 cut(s) 639, 653, 664, 707
AfiI CCNNNNNNNGG 2 cut(s) 204, 304
AhdI GACNNNNNGTC 1 cut(s) 226
AhlI ACTAGT 1 cut(s) 151
AjnI CCWGG 3 cut(s) 202, 503, 695
AleI CACNNNNGTG 1 cut(s) 80
AluBI AGCT 2 cut(s) 113, 624
AluI AGCT 2 cut(s) 113, 624
Alw26I GTCTC 2 cut(s) 345, 679
AlwI GGATC 3 cut(s) 547, 560, 707
AoxI GGCC 1 cut(s) 510
ArsI GACNNNNNNTTYG 2 cut(s) 90, 122
Asp700I GAANNNNTTC 1 cut(s) 32
Asp718I GGTACC 1 cut(s) 662
AspLEI GCGC 1 cut(s) 531
AsuHPI GGTGA 1 cut(s) 187
BamHI GGATCC 1 cut(s) 552
BanI GGYRCC 1 cut(s) 662
BbsI GAAGAC 1 cut(s) 733
BccI CCATC 1 cut(s) 287
BceAI ACGGC 2 cut(s) 238, 497
BcgI CGANNNNNNTGC 2 cut(s) 390, 424
BciT130I CCWGG 3 cut(s) 204, 505, 697
BclI TGATCA 1 cut(s) 489
BcoDI GTCTC 2 cut(s) 345, 679
BcuI ACTAGT 1 cut(s) 151
BfaI CTAG 2 cut(s) 152, 754
BfmI CTRYAG 1 cut(s) 360
BfuAI ACCTGC 1 cut(s) 367
BisI GCNGC 1 cut(s) 189
BlsI GCNGC 1 cut(s) 190
Bme1390I CCNGG 3 cut(s) 204, 505, 697
BmeRI GACNNNNNGTC 1 cut(s) 226
BmiI GGNNCC 2 cut(s) 554, 664
BmrFI CCNGG 3 cut(s) 204, 505, 697
BmsI GCATC 1 cut(s) 480
BpiI GAAGAC 1 cut(s) 733
BsaJI CCNNGG 3 cut(s) 203, 658, 695
BsaXI ACNNNNNCTCC 2 cut(s) 266, 296
Bsc4I CCNNNNNNNGG 2 cut(s) 204, 304
Bse1I ACTGG 1 cut(s) 676
Bse3DI GCAATG 2 cut(s) 87, 396
BseBI CCWGG 3 cut(s) 204, 505, 697
BseDI CCNNGG 3 cut(s) 203, 658, 695
BseGI GGATG 2 cut(s) 71, 127
BseLI CCNNNNNNNGG 2 cut(s) 204, 304
BseMI GCAATG 2 cut(s) 87, 396
BseNI ACTGG 1 cut(s) 676
BseRI GAGGAG 1 cut(s) 35
Bsh1236I CGCG 2 cut(s) 531, 546
BshFI GGCC 1 cut(s) 512
BshNI GGYRCC 1 cut(s) 662
BslFI GGGAC 2 cut(s) 280, 678
BslI CCNNNNNNNGG 2 cut(s) 204, 304
BsmAI GTCTC 2 cut(s) 345, 679
BsmFI GGGAC 2 cut(s) 280, 678
BsnI GGCC 1 cut(s) 512
Bsp143I GATC 3 cut(s) 489, 552, 699
BspACI CCGC 3 cut(s) 158, 189, 562
BspANI GGCC 1 cut(s) 512
BspFNI CGCG 2 cut(s) 531, 546
BspHI TCATGA 1 cut(s) 36
BspLI GGNNCC 2 cut(s) 554, 664
BspMAI CTGCAG 1 cut(s) 364
BspMI ACCTGC 1 cut(s) 367
BspPI GGATC 3 cut(s) 547, 560, 707
BspT107I GGYRCC 1 cut(s) 662
BsrDI GCAATG 2 cut(s) 87, 396
BsrI ACTGG 1 cut(s) 676
BssECI CCNNGG 3 cut(s) 203, 658, 695
BssMI GATC 3 cut(s) 489, 552, 699
Bst2UI CCWGG 3 cut(s) 204, 505, 697
Bst4CI ACNGT 4 cut(s) 82, 175, 526, 651
BstDEI CTNAG 1 cut(s) 620
BstF5I GGATG 2 cut(s) 71, 127
BstFNI CGCG 2 cut(s) 531, 546
BstHHI GCGC 1 cut(s) 531
BstKTI GATC 3 cut(s) 492, 555, 702
BstMAI GTCTC 2 cut(s) 345, 679
BstMBI GATC 3 cut(s) 489, 552, 699
BstMWI GCNNNNNNNGC 1 cut(s) 526
BstNI CCWGG 3 cut(s) 204, 505, 697
BstNSI RCATGY 1 cut(s) 229
BstSCI CCNGG 3 cut(s) 202, 503, 695
BstSFI CTRYAG 1 cut(s) 360
BstUI CGCG 2 cut(s) 531, 546
BstV2I GAAGAC 1 cut(s) 733
BstX2I RGATCY 1 cut(s) 552
BstYI RGATCY 1 cut(s) 552
BsuRI GGCC 1 cut(s) 512
BtgZI GCGATG 1 cut(s) 457
BtsCI GGATG 2 cut(s) 71, 127
BtsIMutI CAGTG 1 cut(s) 87
BveI ACCTGC 1 cut(s) 367
CciI TCATGA 1 cut(s) 36
CfoI GCGC 1 cut(s) 531
CsiI ACCWGGT 1 cut(s) 503
Csp6I GTAC 4 cut(s) 638, 652, 663, 706
CviAII CATG 5 cut(s) 37, 199, 226, 487, 703
CviJI RGCY 5 cut(s) 68, 113, 188, 512, 624
CviKI_1 RGCY 5 cut(s) 68, 113, 188, 512, 624
CviQI GTAC 4 cut(s) 638, 652, 663, 706
DdeI CTNAG 1 cut(s) 620
DpnI GATC 3 cut(s) 491, 554, 701
DpnII GATC 3 cut(s) 489, 552, 699
DriI GACNNNNNGTC 1 cut(s) 226
EaeI YGGCCR 1 cut(s) 510
Eam1105I GACNNNNNGTC 1 cut(s) 226
EcoRII CCWGG 3 cut(s) 202, 503, 695
EcoT22I ATGCAT 1 cut(s) 473
FaeI CATG 5 cut(s) 40, 202, 229, 490, 706
FalI AAGNNNNNCTT 2 cut(s) 17, 49
FaqI GGGAC 2 cut(s) 280, 678
FatI CATG 5 cut(s) 36, 198, 225, 486, 702
FauI CCCGC 1 cut(s) 569
FauNDI CATATG 1 cut(s) 632
FbaI TGATCA 1 cut(s) 489
Fnu4HI GCNGC 1 cut(s) 189
FokI GGATG 2 cut(s) 58, 134
Fsp4HI GCNGC 1 cut(s) 189
FspBI CTAG 2 cut(s) 152, 754
GlaI GCGC 1 cut(s) 530
GluI GCNGC 1 cut(s) 189
HaeIII GGCC 1 cut(s) 512
HhaI GCGC 1 cut(s) 531
Hin1II CATG 5 cut(s) 40, 202, 229, 490, 706
Hin6I GCGC 1 cut(s) 529
HinP1I GCGC 1 cut(s) 529
HindIII AAGCTT 2 cut(s) 111, 622
HinfI GANTC 4 cut(s) 11, 47, 125, 342
HphI GGTGA 1 cut(s) 187
Hpy166II GTNNAC 2 cut(s) 443, 638
Hpy188I TCNGA 3 cut(s) 19, 497, 684
Hpy188III TCNNGA 2 cut(s) 37, 339
Hpy8I GTNNAC 2 cut(s) 443, 638
Hpy99I CGWCG 1 cut(s) 224
HpyAV CCTTC 2 cut(s) 49, 58
HpyCH4III ACNGT 4 cut(s) 82, 175, 526, 651
HpyCH4IV ACGT 1 cut(s) 654
HpyCH4V TGCA 3 cut(s) 92, 362, 471
HpyF10VI GCNNNNNNNGC 1 cut(s) 526
HpyF3I CTNAG 1 cut(s) 620
HpySE526I ACGT 1 cut(s) 654
Hsp92II CATG 5 cut(s) 40, 202, 229, 490, 706
HspAI GCGC 1 cut(s) 529
KpnI GGTACC 1 cut(s) 666
Ksp22I TGATCA 1 cut(s) 489
Kzo9I GATC 3 cut(s) 489, 552, 699
LweI GCATC 1 cut(s) 480
MabI ACCWGGT 1 cut(s) 503
MaeI CTAG 2 cut(s) 152, 754
MaeII ACGT 1 cut(s) 654
MaeIII GTNAC 2 cut(s) 82, 336
MalI GATC 3 cut(s) 491, 554, 701
MboI GATC 3 cut(s) 489, 552, 699
MboII GAAGA 3 cut(s) 37, 73, 733
MflI RGATCY 1 cut(s) 552
MluCI AATT 3 cut(s) 5, 41, 567
MlyI GAGTC 1 cut(s) 119
MmeI TCCRAC 1 cut(s) 615
MnlI CCTC 5 cut(s) 13, 308, 531, 598, 668
Mph1103I ATGCAT 1 cut(s) 473
MroXI GAANNNNTTC 1 cut(s) 32
MseI TTAA 4 cut(s) 213, 572, 626, 749
MslI CAYNNNNRTG 1 cut(s) 80
MspR9I CCNGG 3 cut(s) 204, 505, 697
MvaI CCWGG 3 cut(s) 204, 505, 697
MvnI CGCG 2 cut(s) 531, 546
MwoI GCNNNNNNNGC 1 cut(s) 526
NdeI CATATG 1 cut(s) 632
NdeII GATC 3 cut(s) 489, 552, 699
NlaIII CATG 5 cut(s) 40, 202, 229, 490, 706
NlaIV GGNNCC 2 cut(s) 554, 664
NmeAIII GCCGAG 1 cut(s) 426
NmuCI GTSAC 2 cut(s) 82, 336
NsiI ATGCAT 1 cut(s) 473
NspI RCATGY 1 cut(s) 229
OliI CACNNNNGTG 1 cut(s) 80
PagI TCATGA 1 cut(s) 36
PaqCI CACCTGC 1 cut(s) 367
PdmI GAANNNNTTC 1 cut(s) 32
PfeI GAWTC 3 cut(s) 11, 47, 342
PflFI GACNNNGTC 1 cut(s) 690
PkrI GCNGC 1 cut(s) 190
PleI GAGTC 1 cut(s) 119
PpsI GAGTC 1 cut(s) 119
Psp6I CCWGG 3 cut(s) 202, 503, 695
PspGI CCWGG 3 cut(s) 202, 503, 695
PspN4I GGNNCC 2 cut(s) 554, 664
PstI CTGCAG 1 cut(s) 364
PsuI RGATCY 1 cut(s) 552
PsyI GACNNNGTC 1 cut(s) 690
RsaI GTAC 4 cut(s) 639, 653, 664, 707
RsaNI GTAC 4 cut(s) 638, 652, 663, 706
RseI CAYNNNNRTG 1 cut(s) 80
SaqAI TTAA 4 cut(s) 213, 572, 626, 749
SatI GCNGC 1 cut(s) 189
Sau3AI GATC 3 cut(s) 489, 552, 699
SchI GAGTC 1 cut(s) 119
ScrFI CCNGG 3 cut(s) 204, 505, 697
SetI ASST 5 cut(s) 115, 361, 509, 626, 657
SexAI ACCWGGT 1 cut(s) 503
SfaNI GCATC 1 cut(s) 480
SfcI CTRYAG 1 cut(s) 360
SmiMI CAYNNNNRTG 1 cut(s) 80
SpeI ACTAGT 1 cut(s) 151
Sse9I AATT 3 cut(s) 5, 41, 567
SsiI CCGC 3 cut(s) 158, 189, 562
SspMI CTAG 2 cut(s) 152, 754
StyD4I CCNGG 3 cut(s) 202, 503, 695
TaaI ACNGT 4 cut(s) 82, 175, 526, 651
TaiI ACGT 1 cut(s) 657
TaqI TCGA 3 cut(s) 53, 128, 329
TasI AATT 3 cut(s) 5, 41, 567
TauI GCSGC 1 cut(s) 191
TfiI GAWTC 3 cut(s) 11, 47, 342
Tru1I TTAA 4 cut(s) 213, 572, 626, 749
Tru9I TTAA 4 cut(s) 213, 572, 626, 749
TscAI CASTG 1 cut(s) 87
TseFI GTSAC 2 cut(s) 82, 336
Tsp45I GTSAC 2 cut(s) 82, 336
TspDTI ATGAA 5 cut(s) 17, 25, 53, 244, 358
TspGWI ACGGA 1 cut(s) 545
TspRI CASTG 1 cut(s) 87
Tth111I GACNNNGTC 1 cut(s) 690
XceI RCATGY 1 cut(s) 229
XcmI CCANNNNNNNNNTGG 1 cut(s) 388
XmnI GAANNNNTTC 1 cut(s) 32
XspI CTAG 2 cut(s) 152, 754
Zsp2I ATGCAT 1 cut(s) 473
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.