Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0000300

Physical Location & Seq

Genomic Coordinates Reverse (-)

8602708 .. 8606941

Gene Structure 4234 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1083700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGTTCCACTCTTTGCATCACACACAATTCCGAACCAATTACTCTCTCTTCATGCCAATCTACGACTACATATATGGTACTATGGACAAATCTACTGATGCCCTCTATGAATCTTCAATGAAAAGAGGAGAGGAATTGCCAGATGTCGTGCATCTAACTCATCTAACGACACCTGAGTCCATCTATCATTTACCGCTAGGGTTTGCTTCGCTGGCCTCTAGGCCCCACAAATCAACATGGTATATGTGGCTGATGTGGCCTGTGACATTTCTGTCCATGATTCTAACTCGAATATATGGCCGGCCGTTTGTGGTTGAGCGGCAGTTCTTTAACAAACTCACATTACAAACTTGGGTTATACCCAGATACACTACGCAGGTGAGAACCATTTTCTTTTCTCTACTAAAAGCATACTTCTTTATTGGTATGCTTGAGCTTTGTTTATACATATTACTGCAGTACTACCTGCAATTGCAAAATGGATCTATAAATACCTTGATTGAGGAAGCCATAGTTGAAGCTGAGAAAAAGGGTGTCAAAGTTACAAGTGTCGGCCTCTTGGATCAGGGTGAGGAGCTGAACGGATATGGTGGTCTCTATGTTCGCAGGCATCCTCATCTCAAACTCAAGGTGGTGGATGGAAGTAGCTTAGCAGTTGCTGTAATCCTAAACAGCATTCCAAGAGGGACAACCCAAGTTGTTCTTAGAGGCAACCTCACAAAGGTTGCTTATGCCATTGCCTTTGCTTTGAGCCAGAAGGGTATCCAGATTTGGTTAGTGGGATATGGATTTACTGATAAAGAACAGATGAATGCATCAAAAGGAACATTATTTGTTCCCTTCTCCCAACTGCCACCAAAAAAATTGCGAAAAGACTGCTTCTACCACTACACTCCAGCAATGAAGATTCCCACATCTATGGAGAATAATTGGTTGCCACGAAGGGTGATGAGTGCATGGCGTGTAGCAGGCATAATGCATGCCTTGGAAGATTACCACGAGCATGATTGTGGTTACCCCATGTCCAGCAATGACAAAATTTGGCTAGCAAGTCTTCGACATGGGTTTCAACCTCTACTAGTCAATGTTGGAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0008150 GO:0008152 GO:0012505 GO:0016020 GO:0016491 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071704 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko00073 ko01110 map00073 map01110

Pfam Domains

Protein Families

FA_hydroxylase Wax2_C

Protein Analysis

366

Amino Acids

42.05

Weight (kDa)

9.17

Isoelectric Point (pI)

36.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CER1-like_C	PF12076	256 - 358	1.7e-43	CER1-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000300)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02190 AT1G02190 AT1G02205 AT1G02205 AT1G02205 AT1G02205 AT1G02205 AT2G37700 AT2G37700 AT2G37700 AT2G37700
fragaria_vesca	FvH4_1g22160 FvH4_7g08560 FvH4_7g08560 FvH4_7g08560 FvH4_7g08570 FvH4_7g08570 FvH4_7g08590 FvH4_7g08590
malus_domestica	MD02G1226900.v1.1 MD07G1083700.v1.1 MD07G1083800.v1.1 MD07G1086200.v1.1 MD07G1086300.v1.1 MD07G1086700.v1.1 MD13G1075600.v1.1
prunus_persica	Prupe.2G112600_v2.0.a1 Prupe.2G112800_v2.0.a1 Prupe.2G113000_v2.0.a1 Prupe.2G113500_v2.0.a1 Prupe.2G113600_v2.0.a1
pyrus_communis	pycom02g19600 pycom02g19610 pycom07g06920 pycom07g06930
rosa_chinensis	RchiOBHm_Chr1g0343261 RchiOBHm_Chr1g0343301 RchiOBHm_Chr1g0343371 RchiOBHm_Chr1g0343431 RchiOBHm_Chr1g0343441 RchiOBHm_Chr1g0343521 RchiOBHm_Chr1g0343691 RchiOBHm_Chr1g0343791
rosa_laevigata	RLG00000028951 RLG00000028953 RLG00000028965 RLG00000028968 RLG00000028969 RLG00000028971 RLG00000028972 RLG00000028974 RLG00000029891
rosa_multiflora	Rmu_sc0000021.1_g000002 Rmu_sc0000335.1_g000046 Rmu_sc0000335.1_g000047 Rmu_sc0000335.1_g000058 Rmu_sc0000335.1_g000061 Rmu_sc0000335.1_g000106 Rmu_sc0000335.1_g000125 Rmu_sc0000544.1_g000010 Rmu_sc0003430.1_g000012 Rmu_sc0005796.1_g000004 Rmu_sc0028268.1_g000001 Rmu_ssc0000259.1_g000038
rosa_roxburghii	Rroxscaffold_2G00110090 Rroxscaffold_4G00310350 Rroxscaffold_4G00310610 Rroxscaffold_4G00310710 Rroxscaffold_4G00310740 Rroxscaffold_4G00310760 Rroxscaffold_4G00321110
rosa_rugosa	Rorug01G0080100 Rorug01G0080200 Rorug01G0166400 Rorug01G0166500 Rorug01G0166500 Rorug01G0166600 Rorug01G0166700 Rorug01G0166800 Rorug01G0168400 Rorug01G0168500 Rorug01G0168800 Rorug03G0241300 Rorug03G0241400 Rorug04G0001200 Rorug06G0031500 Rorug06G0073200 Rorug06G0264000
rosa_samantha	Rh1AG098100 Rh1AG181800 Rh1AG182100 Rh1AG182400 Rh1AG183000 Rh1AG183600 Rh1AG184300 Rh1AG185400 Rh1BG104000 Rh1BG150000 Rh1BG150400 Rh1BG152100 Rh1BG152300 Rh1CG168600 Rh1CG168900 Rh1CG169000 Rh1CG169700 Rh1CG170500 Rh1CG171200 Rh1DG182000 Rh1DG182300 Rh1DG184000 Rh1DG184200
rosa_wichuraiana	Rw0G012940 Rw1G007640 Rw1G007670 Rw1G011320 Rw1G015090 Rw1G015110 Rw1G015130 Rw1G015150 Rw1G015290

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	367
AasI	GACNNNNNNGTC	2 cut(s)	175, 271
Acc36I	ACCTGC	2 cut(s)	367, 474
AccBSI	CCGCTC	1 cut(s)	319
AciI	CCGC	2 cut(s)	194, 319
AclWI	GGATC	2 cut(s)	490, 570
AcoI	YGGCCR	2 cut(s)	298, 302
AcsI	RAATTY	1 cut(s)	1038
AfaI	GTAC	2 cut(s)	79, 461
AfiI	CCNNNNNNNGG	1 cut(s)	721
AgsI	TTSAA	3 cut(s)	117, 518, 1070
AhlI	ACTAGT	1 cut(s)	1078
AluBI	AGCT	4 cut(s)	436, 521, 577, 648
AluI	AGCT	4 cut(s)	436, 521, 577, 648
Alw26I	GTCTC	1 cut(s)	599
AlwI	GGATC	2 cut(s)	490, 570
AlwNI	CAGNNNCTG	1 cut(s)	659
AoxI	GGCC	6 cut(s)	213, 221, 257, 298, 302, 553
ApoI	RAATTY	1 cut(s)	1038
AspS9I	GGNCC	1 cut(s)	222
AsuHPI	GGTGA	3 cut(s)	391, 581, 958
AsuNHI	GCTAGC	1 cut(s)	1045
BauI	CACGAG	1 cut(s)	998
BbsI	GAAGAC	1 cut(s)	1046
BccI	CCATC	2 cut(s)	188, 632
BceAI	ACGGC	1 cut(s)	289
BcgI	CGANNNNNNTGC	2 cut(s)	858, 892
BciVI	GTATCC	1 cut(s)	773
BcoDI	GTCTC	1 cut(s)	599
BcuI	ACTAGT	1 cut(s)	1078
BfaI	CTAG	4 cut(s)	197, 219, 1046, 1079
BfmI	CTRYAG	1 cut(s)	455
BfuAI	ACCTGC	2 cut(s)	367, 474
BfuI	GTATCC	1 cut(s)	773
BisI	GCNGC	1 cut(s)	320
BlpI	GCTNAGC	1 cut(s)	649
BlsI	GCNGC	1 cut(s)	321
BmcAI	AGTACT	1 cut(s)	461
BmgT120I	GGNCC	1 cut(s)	222
BmiI	GGNNCC	1 cut(s)	224
BmsI	GCATC	5 cut(s)	25, 88, 160, 619, 824
BmtI	GCTAGC	1 cut(s)	1049
BpiI	GAAGAC	1 cut(s)	1046
BplI	GAGNNNNNCTC	2 cut(s)	699, 731
BpmI	CTGGAG	1 cut(s)	879
Bpu1102I	GCTNAGC	1 cut(s)	649
BpuEI	CTTGAG	2 cut(s)	452, 611
BsaI	GGTCTC	1 cut(s)	599
BsaJI	CCNNGG	1 cut(s)	984
Bsc4I	CCNNNNNNNGG	1 cut(s)	721
Bse118I	RCCGGY	1 cut(s)	300
Bse3DI	GCAATG	3 cut(s)	735, 906, 1036
BseDI	CCNNGG	1 cut(s)	984
BseGI	GGATG	2 cut(s)	610, 643
BseLI	CCNNNNNNNGG	1 cut(s)	721
BseMI	GCAATG	3 cut(s)	735, 906, 1036
BseMII	CTCAG	2 cut(s)	165, 513
BseRI	GAGGAG	2 cut(s)	141, 587
BseX3I	CGGCCG	1 cut(s)	302
Bsh1285I	CGRYCG	1 cut(s)	305
BshFI	GGCC	6 cut(s)	215, 223, 259, 300, 304, 555
BsiEI	CGRYCG	1 cut(s)	305
BsiSI	CCGG	1 cut(s)	301
BslFI	GGGAC	1 cut(s)	700
BslI	CCNNNNNNNGG	1 cut(s)	721
BsmAI	GTCTC	1 cut(s)	599
BsmFI	GGGAC	1 cut(s)	700
BsmI	GAATGC	2 cut(s)	675, 817
BsnI	GGCC	6 cut(s)	215, 223, 259, 300, 304, 555
Bso31I	GGTCTC	1 cut(s)	599
Bsp143I	GATC	2 cut(s)	482, 562
Bsp1720I	GCTNAGC	1 cut(s)	649
BspACI	CCGC	2 cut(s)	194, 319
BspANI	GGCC	6 cut(s)	215, 223, 259, 300, 304, 555
BspCNI	CTCAG	2 cut(s)	166, 514
BspLI	GGNNCC	1 cut(s)	224
BspMAI	CTGCAG	1 cut(s)	459
BspMI	ACCTGC	2 cut(s)	367, 474
BspOI	GCTAGC	1 cut(s)	1049
BspPI	GGATC	2 cut(s)	490, 570
BspTNI	GGTCTC	1 cut(s)	599
BsrBI	CCGCTC	1 cut(s)	319
BsrDI	GCAATG	3 cut(s)	735, 906, 1036
BsrFI	RCCGGY	1 cut(s)	300
BssAI	RCCGGY	1 cut(s)	300
BssECI	CCNNGG	1 cut(s)	984
BssMI	GATC	2 cut(s)	482, 562
BssSI	CACGAG	1 cut(s)	998
BssT1I	CCWWGG	1 cut(s)	984
Bst2BI	CACGAG	1 cut(s)	998
Bst6I	CTCTTC	1 cut(s)	53
BstC8I	GCNNGC	6 cut(s)	213, 302, 608, 970, 981, 1047
BstDEI	CTNAG	4 cut(s)	174, 522, 649, 704
BstEII	GGTNACC	1 cut(s)	1013
BstENI	CCTNNNNNAGG	1 cut(s)	719
BstF5I	GGATG	2 cut(s)	610, 643
BstKTI	GATC	2 cut(s)	485, 565
BstMAI	GTCTC	1 cut(s)	599
BstMBI	GATC	2 cut(s)	482, 562
BstMCI	CGRYCG	1 cut(s)	305
BstMWI	GCNNNNNNNGC	2 cut(s)	212, 256
BstNSI	RCATGY	1 cut(s)	983
BstPI	GGTNACC	1 cut(s)	1013
BstSFI	CTRYAG	1 cut(s)	455
BstV2I	GAAGAC	1 cut(s)	1046
BstX2I	RGATCY	1 cut(s)	482
BstXI	CCANNNNNNTGG	1 cut(s)	919
BstYI	RGATCY	1 cut(s)	482
BstZI	CGGCCG	1 cut(s)	302
BsuI	GTATCC	1 cut(s)	773
BsuRI	GGCC	6 cut(s)	215, 223, 259, 300, 304, 555
BtsCI	GGATG	2 cut(s)	610, 643
BveI	ACCTGC	2 cut(s)	367, 474
Cac8I	GCNNGC	6 cut(s)	213, 302, 608, 970, 981, 1047
CaiI	CAGNNNCTG	1 cut(s)	659
Cfr10I	RCCGGY	1 cut(s)	300
Cfr13I	GGNCC	1 cut(s)	222
Csp6I	GTAC	2 cut(s)	78, 460
CviAII	CATG	8 cut(s)	52, 237, 277, 957, 980, 1004, 1021, 1061
CviQI	GTAC	2 cut(s)	78, 460
DdeI	CTNAG	4 cut(s)	174, 522, 649, 704
DpnI	GATC	2 cut(s)	484, 564
DpnII	GATC	2 cut(s)	482, 562
DrdI	GACNNNNNNGTC	2 cut(s)	175, 271
DseDI	GACNNNNNNGTC	2 cut(s)	175, 271
EaeI	YGGCCR	2 cut(s)	298, 302
EagI	CGGCCG	1 cut(s)	302
Eam1104I	CTCTTC	1 cut(s)	53
EarI	CTCTTC	1 cut(s)	53
EclXI	CGGCCG	1 cut(s)	302
Eco130I	CCWWGG	1 cut(s)	984
Eco31I	GGTCTC	1 cut(s)	599
Eco52I	CGGCCG	1 cut(s)	302
Eco91I	GGTNACC	1 cut(s)	1013
EcoNI	CCTNNNNNAGG	1 cut(s)	719
EcoO109I	RGGNCCY	1 cut(s)	222
EcoO65I	GGTNACC	1 cut(s)	1013
EcoT14I	CCWWGG	1 cut(s)	984
EcoT22I	ATGCAT	2 cut(s)	817, 981
ErhI	CCWWGG	1 cut(s)	984
FaeI	CATG	8 cut(s)	55, 240, 280, 960, 983, 1007, 1024, 1064
FalI	AAGNNNNNCTT	2 cut(s)	687, 719
FaqI	GGGAC	1 cut(s)	700
FatI	CATG	8 cut(s)	51, 236, 276, 956, 979, 1003, 1020, 1060
Fnu4HI	GCNGC	1 cut(s)	320
FokI	GGATG	2 cut(s)	597, 650
FseI	GGCCGGCC	1 cut(s)	304
Fsp4HI	GCNGC	1 cut(s)	320
FspBI	CTAG	4 cut(s)	197, 219, 1046, 1079
GluI	GCNGC	1 cut(s)	320
GsuI	CTGGAG	1 cut(s)	879
HaeIII	GGCC	6 cut(s)	215, 223, 259, 300, 304, 555
HapII	CCGG	1 cut(s)	301
Hin1II	CATG	8 cut(s)	55, 240, 280, 960, 983, 1007, 1024, 1064
HinfI	GANTC	4 cut(s)	110, 176, 280, 907
HpaII	CCGG	1 cut(s)	301
HphI	GGTGA	3 cut(s)	391, 581, 958
Hpy188I	TCNGA	1 cut(s)	32
Hpy188III	TCNNGA	1 cut(s)	766
HpyAV	CCTTC	3 cut(s)	751, 850, 936
HpyCH4V	TGCA	8 cut(s)	16, 151, 457, 469, 475, 815, 956, 979
HpyF10VI	GCNNNNNNNGC	2 cut(s)	212, 256
HpyF3I	CTNAG	4 cut(s)	174, 522, 649, 704
Hsp92II	CATG	8 cut(s)	55, 240, 280, 960, 983, 1007, 1024, 1064
KroI	GCCGGC	1 cut(s)	300
KroNI	GCCGGC	1 cut(s)	302
Kzo9I	GATC	2 cut(s)	482, 562
LmnI	GCTCC	1 cut(s)	574
LweI	GCATC	5 cut(s)	25, 88, 160, 619, 824
MaeI	CTAG	4 cut(s)	197, 219, 1046, 1079
MaeIII	GTNAC	3 cut(s)	262, 541, 1013
MalI	GATC	2 cut(s)	484, 564
MbiI	CCGCTC	1 cut(s)	319
MboI	GATC	2 cut(s)	482, 562
MboII	GAAGA	5 cut(s)	40, 105, 916, 1001, 1046
MfeI	CAATTG	1 cut(s)	470
MflI	RGATCY	1 cut(s)	482
MluCI	AATT	7 cut(s)	26, 37, 134, 470, 863, 928, 1038
MlyI	GAGTC	1 cut(s)	185
MmeI	TCCRAC	1 cut(s)	1069
Mph1103I	ATGCAT	2 cut(s)	817, 981
MroNI	GCCGGC	1 cut(s)	300
MseI	TTAA	1 cut(s)	330
MslI	CAYNNNNRTG	3 cut(s)	917, 1002, 1008
MspI	CCGG	1 cut(s)	301
MunI	CAATTG	1 cut(s)	470
Mva1269I	GAATGC	2 cut(s)	675, 817
MwoI	GCNNNNNNNGC	2 cut(s)	212, 256
NaeI	GCCGGC	1 cut(s)	302
NdeII	GATC	2 cut(s)	482, 562
NgoMIV	GCCGGC	1 cut(s)	300
NheI	GCTAGC	1 cut(s)	1045
NlaIII	CATG	8 cut(s)	55, 240, 280, 960, 983, 1007, 1024, 1064
NlaIV	GGNNCC	1 cut(s)	224
NmuCI	GTSAC	1 cut(s)	262
NsiI	ATGCAT	2 cut(s)	817, 981
NspI	RCATGY	1 cut(s)	983
PaeI	GCATGC	1 cut(s)	983
PaqCI	CACCTGC	1 cut(s)	367
PctI	GAATGC	2 cut(s)	675, 817
PdiI	GCCGGC	1 cut(s)	302
PfeI	GAWTC	3 cut(s)	110, 280, 907
PkrI	GCNGC	1 cut(s)	321
PleI	GAGTC	1 cut(s)	184
PpsI	GAGTC	1 cut(s)	184
PspEI	GGTNACC	1 cut(s)	1013
PspN4I	GGNNCC	1 cut(s)	224
PspPI	GGNCC	1 cut(s)	222
PstI	CTGCAG	1 cut(s)	459
PstNI	CAGNNNCTG	1 cut(s)	659
PsuI	RGATCY	1 cut(s)	482
RigI	GGCCGGCC	1 cut(s)	304
RsaI	GTAC	2 cut(s)	79, 461
RsaNI	GTAC	2 cut(s)	78, 460
RseI	CAYNNNNRTG	3 cut(s)	917, 1002, 1008
SaqAI	TTAA	1 cut(s)	330
SatI	GCNGC	1 cut(s)	320
Sau3AI	GATC	2 cut(s)	482, 562
Sau96I	GGNCC	1 cut(s)	222
ScaI	AGTACT	1 cut(s)	461
SchI	GAGTC	1 cut(s)	185
SfaNI	GCATC	5 cut(s)	25, 88, 160, 619, 824
SfcI	CTRYAG	1 cut(s)	455
SmiMI	CAYNNNNRTG	3 cut(s)	917, 1002, 1008
SmlI	CTYRAG	2 cut(s)	431, 626
SmoI	CTYRAG	2 cut(s)	431, 626
SpeI	ACTAGT	1 cut(s)	1078
SphI	GCATGC	1 cut(s)	983
Sse9I	AATT	7 cut(s)	26, 37, 134, 470, 863, 928, 1038
SsiI	CCGC	2 cut(s)	194, 319
SspMI	CTAG	4 cut(s)	197, 219, 1046, 1079
StyI	CCWWGG	1 cut(s)	984
TaqI	TCGA	2 cut(s)	289, 1057
TasI	AATT	7 cut(s)	26, 37, 134, 470, 863, 928, 1038
TatI	WGTACW	1 cut(s)	459
TauI	GCSGC	1 cut(s)	322
TfiI	GAWTC	3 cut(s)	110, 280, 907
Tru1I	TTAA	1 cut(s)	330
Tru9I	TTAA	1 cut(s)	330
TseFI	GTSAC	1 cut(s)	262
Tsp45I	GTSAC	1 cut(s)	262
TspDTI	ATGAA	5 cut(s)	40, 123, 134, 824, 917
TspGWI	ACGGA	1 cut(s)	597
XagI	CCTNNNNNAGG	1 cut(s)	719
XapI	RAATTY	1 cut(s)	1038
XceI	RCATGY	1 cut(s)	983
XspI	CTAG	4 cut(s)	197, 219, 1046, 1079
ZrmI	AGTACT	1 cut(s)	461
Zsp2I	ATGCAT	2 cut(s)	817, 981

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.