Rmu_sc0003430.1_g000012

Belongs to the sterol desaturase family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003430.1
Physical Location & Seq
Forward (+)
40706 .. 42878
2173 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003430.1_g000012.1.cds

Sequence Viewer

Length: 1077 bp
atggacaagtctagtgatactctacatgaatcttcactcaagaaagaggaatcccctgatgtggttcatctgacccatttaacaacaactaagtccatctatcgactcccattggcattttcttcattggcctctaatccacacacctcaacatggtacttatggttgttgtggccagtaacattagggtctgtgatgctaactcggatatttggccgttcatttgttattgagagacagcgttttgctaaacaaagactacaaacttgggttattccaaaatacattagtgtgattttgtttgctacctttaattatgagttgcagtacttgctctcacggcaaaatgaagatataaacagagcgattgaggacgccatacttgaagctgagaacaagggtgtcaaagttataagtttaggtctctttaatcagggaaaggggcttaataattatggtgagatatatgtccagaggaatccacggctgaaaataaaggtggtggatgggagtagcttagctgtggctgtcatccttaacagcattccaaaaggcgctacccaggttctccttacaggaaacctcacaaaggttgcttatgcccttgccttttctttgtgccagagggatatccaggtagttacattacagcaggcggagtatttgaagctcaccaaatcattaaatgctacagagggtaaggtggttcatgacagaagctatgctcaaaagatttggttggtaggagatggatccagtgaaaaagatcagttgagcgcacccaacggaacaatatttgttcccttctctcaattcccgccaaaaaagttgcgaaaagactgttactatcactgtactccagccatgaagatccccaagtctcttgagaatgttcactcttgtgagaactggttgccaaggagggtgatgagtgcgtggcgtatagctgggatagtgcatgcattggaaggttggaatgaccatgagtgtggttataccatgtccgatattgacaaagtttggcaaactactcttcgacatggatttctgccactgatccccaccgctactccttaa

Protein Analysis

358

Amino Acids

40.55

Weight (kDa)

9.26

Isoelectric Point (pI)

36.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000300)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02190 AT1G02190 AT1G02205 AT1G02205 AT1G02205 AT1G02205 AT1G02205 AT2G37700 AT2G37700 AT2G37700 AT2G37700
fragaria_vesca FvH4_1g22160 FvH4_7g08560 FvH4_7g08560 FvH4_7g08560 FvH4_7g08570 FvH4_7g08570 FvH4_7g08590 FvH4_7g08590
malus_domestica MD02G1226900.v1.1 MD07G1083700.v1.1 MD07G1083800.v1.1 MD07G1086200.v1.1 MD07G1086300.v1.1 MD07G1086700.v1.1 MD13G1075600.v1.1
prunus_persica Prupe.2G112600_v2.0.a1 Prupe.2G112800_v2.0.a1 Prupe.2G113000_v2.0.a1 Prupe.2G113500_v2.0.a1 Prupe.2G113600_v2.0.a1
pyrus_communis pycom02g19600 pycom02g19610 pycom07g06920 pycom07g06930
rosa_chinensis RchiOBHm_Chr1g0343261 RchiOBHm_Chr1g0343301 RchiOBHm_Chr1g0343371 RchiOBHm_Chr1g0343431 RchiOBHm_Chr1g0343441 RchiOBHm_Chr1g0343521 RchiOBHm_Chr1g0343691 RchiOBHm_Chr1g0343791
rosa_laevigata RLG00000028951 RLG00000028953 RLG00000028965 RLG00000028968 RLG00000028969 RLG00000028971 RLG00000028972 RLG00000028974 RLG00000029891
rosa_multiflora Rmu_sc0000021.1_g000002 Rmu_sc0000335.1_g000046 Rmu_sc0000335.1_g000047 Rmu_sc0000335.1_g000058 Rmu_sc0000335.1_g000061 Rmu_sc0000335.1_g000106 Rmu_sc0000335.1_g000125 Rmu_sc0000544.1_g000010 Rmu_sc0003430.1_g000012 Rmu_sc0005796.1_g000004 Rmu_sc0028268.1_g000001 Rmu_ssc0000259.1_g000038
rosa_roxburghii Rroxscaffold_2G00110090 Rroxscaffold_4G00310350 Rroxscaffold_4G00310610 Rroxscaffold_4G00310710 Rroxscaffold_4G00310740 Rroxscaffold_4G00310760 Rroxscaffold_4G00321110
rosa_rugosa Rorug01G0080100 Rorug01G0080200 Rorug01G0166400 Rorug01G0166500 Rorug01G0166500 Rorug01G0166600 Rorug01G0166700 Rorug01G0166800 Rorug01G0168400 Rorug01G0168500 Rorug01G0168800 Rorug03G0241300 Rorug03G0241400 Rorug04G0001200 Rorug06G0031500 Rorug06G0073200 Rorug06G0264000
rosa_samantha Rh1AG098100 Rh1AG181800 Rh1AG182100 Rh1AG182400 Rh1AG183000 Rh1AG183600 Rh1AG184300 Rh1AG185400 Rh1BG104000 Rh1BG150000 Rh1BG150400 Rh1BG152100 Rh1BG152300 Rh1CG168600 Rh1CG168900 Rh1CG169000 Rh1CG169700 Rh1CG170500 Rh1CG171200 Rh1DG182000 Rh1DG182300 Rh1DG184000 Rh1DG184200
rosa_wichuraiana Rw0G012940 Rw1G007640 Rw1G007670 Rw1G011320 Rw1G015090 Rw1G015110 Rw1G015130 Rw1G015150 Rw1G015290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 413
AciI CCGC 3 cut(s) 656, 818, 1065
AclWI GGATC 4 cut(s) 747, 760, 865, 1051
AcoI YGGCCR 2 cut(s) 173, 214
AcyI GRCGYC 1 cut(s) 375
AfaI GTAC 3 cut(s) 158, 329, 856
AfiI CCNNNNNNNGG 3 cut(s) 61, 153, 589
AgsI TTSAA 2 cut(s) 386, 667
AjnI CCWGG 2 cut(s) 561, 633
AleI CACNNNNGTG 1 cut(s) 900
AluBI AGCT 6 cut(s) 389, 516, 521, 670, 720, 947
AluI AGCT 6 cut(s) 389, 516, 521, 670, 720, 947
Alw26I GTCTC 3 cut(s) 229, 428, 885
AlwI GGATC 4 cut(s) 747, 760, 865, 1051
AoxI GGCC 3 cut(s) 129, 173, 214
AspLEI GCGC 2 cut(s) 557, 779
AsuHPI GGTGA 3 cut(s) 470, 664, 937
BalI TGGCCA 1 cut(s) 175
BamHI GGATCC 1 cut(s) 752
BccI CCATC 3 cut(s) 104, 500, 743
BceAI ACGGC 3 cut(s) 201, 356, 500
BciT130I CCWGG 2 cut(s) 563, 635
BcoDI GTCTC 3 cut(s) 229, 428, 885
BfaI CTAG 1 cut(s) 12
BfmI CTRYAG 1 cut(s) 690
BfoI RGCGCY 1 cut(s) 558
BlpI GCTNAGC 1 cut(s) 517
BmcAI AGTACT 1 cut(s) 329
Bme1390I CCNGG 2 cut(s) 563, 635
BmiI GGNNCC 1 cut(s) 754
BmrFI CCNGG 2 cut(s) 563, 635
BmsI GCATC 1 cut(s) 186
BpmI CTGGAG 1 cut(s) 843
Bpu1102I GCTNAGC 1 cut(s) 517
BpuEI CTTGAG 2 cut(s) 23, 905
BsaHI GRCGYC 1 cut(s) 375
BsaI GGTCTC 1 cut(s) 428
BsaJI CCNNGG 3 cut(s) 482, 561, 917
BsaXI ACNNNNNCTCC 1 cut(s) 1054
Bsc4I CCNNNNNNNGG 3 cut(s) 61, 153, 589
Bse1I ACTGG 3 cut(s) 176, 756, 914
BseBI CCWGG 2 cut(s) 563, 635
BseDI CCNNGG 3 cut(s) 482, 561, 917
BseGI GGATG 2 cut(s) 511, 531
BseLI CCNNNNNNNGG 3 cut(s) 61, 153, 589
BseMII CTCAG 1 cut(s) 381
BseNI ACTGG 3 cut(s) 176, 756, 914
BseYI CCCAGC 1 cut(s) 947
BshFI GGCC 3 cut(s) 131, 175, 216
BslI CCNNNNNNNGG 3 cut(s) 61, 153, 589
BsmAI GTCTC 3 cut(s) 229, 428, 885
BsmI GAATGC 1 cut(s) 543
BsnI GGCC 3 cut(s) 131, 175, 216
Bso31I GGTCTC 1 cut(s) 428
Bsp143I GATC 4 cut(s) 752, 766, 870, 1056
Bsp1720I GCTNAGC 1 cut(s) 517
BspACI CCGC 3 cut(s) 656, 818, 1065
BspANI GGCC 3 cut(s) 131, 175, 216
BspCNI CTCAG 1 cut(s) 382
BspHI TCATGA 1 cut(s) 709
BspLI GGNNCC 1 cut(s) 754
BspPI GGATC 4 cut(s) 747, 760, 865, 1051
BspTNI GGTCTC 1 cut(s) 428
BsrI ACTGG 3 cut(s) 176, 756, 914
BssECI CCNNGG 3 cut(s) 482, 561, 917
BssMI GATC 4 cut(s) 752, 766, 870, 1056
BssNI GRCGYC 1 cut(s) 375
BssT1I CCWWGG 1 cut(s) 917
Bst2UI CCWGG 2 cut(s) 563, 635
Bst4CI ACNGT 2 cut(s) 842, 854
Bst6I CTCTTC 1 cut(s) 1038
BstACI GRCGYC 1 cut(s) 375
BstAPI GCANNNNNTGC 1 cut(s) 331
BstC8I GCNNGC 2 cut(s) 654, 960
BstDEI CTNAG 3 cut(s) 90, 390, 517
BstDSI CCRYGG 1 cut(s) 482
BstENI CCTNNNNNAGG 1 cut(s) 587
BstF5I GGATG 2 cut(s) 511, 531
BstH2I RGCGCY 1 cut(s) 558
BstHHI GCGC 2 cut(s) 557, 779
BstKTI GATC 4 cut(s) 755, 769, 873, 1059
BstMAI GTCTC 3 cut(s) 229, 428, 885
BstMBI GATC 4 cut(s) 752, 766, 870, 1056
BstMWI GCNNNNNNNGC 2 cut(s) 331, 340
BstNI CCWGG 2 cut(s) 563, 635
BstNSI RCATGY 1 cut(s) 962
BstSCI CCNGG 2 cut(s) 561, 633
BstSFI CTRYAG 1 cut(s) 690
BstX2I RGATCY 2 cut(s) 752, 870
BstXI CCANNNNNNTGG 1 cut(s) 989
BstYI RGATCY 2 cut(s) 752, 870
BsuRI GGCC 3 cut(s) 131, 175, 216
BtgI CCRYGG 1 cut(s) 482
BtsCI GGATG 2 cut(s) 511, 531
BtsIMutI CAGTG 3 cut(s) 763, 850, 1052
Cac8I GCNNGC 2 cut(s) 654, 960
CciI TCATGA 1 cut(s) 709
CfoI GCGC 2 cut(s) 557, 779
CseI GACGC 1 cut(s) 383
Csp6I GTAC 3 cut(s) 157, 328, 855
CviAII CATG 8 cut(s) 26, 153, 710, 865, 959, 983, 1000, 1040
CviQI GTAC 3 cut(s) 157, 328, 855
DdeI CTNAG 3 cut(s) 90, 390, 517
DpnI GATC 4 cut(s) 754, 768, 872, 1058
DpnII GATC 4 cut(s) 752, 766, 870, 1056
EaeI YGGCCR 2 cut(s) 173, 214
Eam1104I CTCTTC 1 cut(s) 1038
EarI CTCTTC 1 cut(s) 1038
EciI GGCGGA 1 cut(s) 671
Eco130I CCWWGG 1 cut(s) 917
Eco31I GGTCTC 1 cut(s) 428
Eco32I GATATC 1 cut(s) 631
EcoNI CCTNNNNNAGG 1 cut(s) 587
EcoRII CCWGG 2 cut(s) 561, 633
EcoRV GATATC 1 cut(s) 631
EcoT14I CCWWGG 1 cut(s) 917
EcoT22I ATGCAT 1 cut(s) 964
ErhI CCWWGG 1 cut(s) 917
FaeI CATG 8 cut(s) 29, 156, 713, 868, 962, 986, 1003, 1043
FatI CATG 8 cut(s) 25, 152, 709, 864, 958, 982, 999, 1039
FauI CCCGC 1 cut(s) 825
FokI GGATG 2 cut(s) 518, 518
FspBI CTAG 1 cut(s) 12
GlaI GCGC 2 cut(s) 556, 778
GsaI CCCAGC 1 cut(s) 951
GsuI CTGGAG 1 cut(s) 843
HaeII RGCGCY 1 cut(s) 558
HaeIII GGCC 3 cut(s) 131, 175, 216
HgaI GACGC 1 cut(s) 383
HhaI GCGC 2 cut(s) 557, 779
Hin1I GRCGYC 1 cut(s) 375
Hin1II CATG 8 cut(s) 29, 156, 713, 868, 962, 986, 1003, 1043
Hin6I GCGC 2 cut(s) 555, 777
HinP1I GCGC 2 cut(s) 555, 777
HinfI GANTC 4 cut(s) 29, 50, 105, 478
HphI GGTGA 3 cut(s) 470, 664, 937
Hpy166II GTNNAC 1 cut(s) 895
Hpy188I TCNGA 3 cut(s) 72, 207, 1006
Hpy188III TCNNGA 4 cut(s) 40, 472, 710, 884
Hpy8I GTNNAC 1 cut(s) 895
HpyAV CCTTC 2 cut(s) 814, 962
HpyCH4III ACNGT 2 cut(s) 842, 854
HpyCH4V TGCA 3 cut(s) 325, 958, 962
HpyF10VI GCNNNNNNNGC 2 cut(s) 331, 340
HpyF3I CTNAG 3 cut(s) 90, 390, 517
Hsp92I GRCGYC 1 cut(s) 375
Hsp92II CATG 8 cut(s) 29, 156, 713, 868, 962, 986, 1003, 1043
HspAI GCGC 2 cut(s) 555, 777
Kzo9I GATC 4 cut(s) 752, 766, 870, 1056
LweI GCATC 1 cut(s) 186
MaeI CTAG 1 cut(s) 12
MaeIII GTNAC 3 cut(s) 178, 640, 842
MalI GATC 4 cut(s) 754, 768, 872, 1058
MboI GATC 4 cut(s) 752, 766, 870, 1056
MboII GAAGA 5 cut(s) 24, 114, 362, 880, 1025
MflI RGATCY 2 cut(s) 752, 870
MlsI TGGCCA 1 cut(s) 175
MluCI AATT 3 cut(s) 313, 451, 812
MluNI TGGCCA 1 cut(s) 175
MlyI GAGTC 1 cut(s) 99
MmeI TCCRAC 1 cut(s) 953
MnlI CCTC 9 cut(s) 40, 142, 157, 364, 468, 593, 618, 688, 915
Mox20I TGGCCA 1 cut(s) 175
Mph1103I ATGCAT 1 cut(s) 964
MscI TGGCCA 1 cut(s) 175
MseI TTAA 7 cut(s) 80, 312, 429, 447, 537, 683, 1075
MslI CAYNNNNRTG 3 cut(s) 290, 900, 987
Msp20I TGGCCA 1 cut(s) 175
MspR9I CCNGG 2 cut(s) 563, 635
Mva1269I GAATGC 1 cut(s) 543
MvaI CCWGG 2 cut(s) 563, 635
MwoI GCNNNNNNNGC 2 cut(s) 331, 340
NdeII GATC 4 cut(s) 752, 766, 870, 1056
NlaIII CATG 8 cut(s) 29, 156, 713, 868, 962, 986, 1003, 1043
NlaIV GGNNCC 1 cut(s) 754
NsiI ATGCAT 1 cut(s) 964
NspI RCATGY 1 cut(s) 962
OliI CACNNNNGTG 1 cut(s) 900
PaeI GCATGC 1 cut(s) 962
PagI TCATGA 1 cut(s) 709
PctI GAATGC 1 cut(s) 543
PfeI GAWTC 3 cut(s) 29, 50, 478
PleI GAGTC 1 cut(s) 99
PpsI GAGTC 1 cut(s) 99
PsiI TTATAA 1 cut(s) 413
Psp6I CCWGG 2 cut(s) 561, 633
PspFI CCCAGC 1 cut(s) 947
PspGI CCWGG 2 cut(s) 561, 633
PspN4I GGNNCC 1 cut(s) 754
PsuI RGATCY 2 cut(s) 752, 870
RsaI GTAC 3 cut(s) 158, 329, 856
RsaNI GTAC 3 cut(s) 157, 328, 855
RseI CAYNNNNRTG 3 cut(s) 290, 900, 987
SaqAI TTAA 7 cut(s) 80, 312, 429, 447, 537, 683, 1075
Sau3AI GATC 4 cut(s) 752, 766, 870, 1056
ScaI AGTACT 1 cut(s) 329
SchI GAGTC 1 cut(s) 99
ScrFI CCNGG 2 cut(s) 563, 635
SfaNI GCATC 1 cut(s) 186
SfcI CTRYAG 1 cut(s) 690
SmiMI CAYNNNNRTG 3 cut(s) 290, 900, 987
SmlI CTYRAG 2 cut(s) 38, 884
SmoI CTYRAG 2 cut(s) 38, 884
SphI GCATGC 1 cut(s) 962
Sse9I AATT 3 cut(s) 313, 451, 812
SsiI CCGC 3 cut(s) 656, 818, 1065
SspI AATATT 1 cut(s) 795
SspMI CTAG 1 cut(s) 12
StyD4I CCNGG 2 cut(s) 561, 633
StyI CCWWGG 1 cut(s) 917
TaaI ACNGT 2 cut(s) 842, 854
TaqI TCGA 2 cut(s) 103, 1036
TasI AATT 3 cut(s) 313, 451, 812
TatI WGTACW 2 cut(s) 327, 854
TfiI GAWTC 3 cut(s) 29, 50, 478
Tru1I TTAA 7 cut(s) 80, 312, 429, 447, 537, 683, 1075
Tru9I TTAA 7 cut(s) 80, 312, 429, 447, 537, 683, 1075
TscAI CASTG 3 cut(s) 763, 857, 1059
TspDTI ATGAA 7 cut(s) 42, 56, 114, 210, 363, 698, 881
TspGWI ACGGA 1 cut(s) 801
TspRI CASTG 3 cut(s) 763, 857, 1059
XagI CCTNNNNNAGG 1 cut(s) 587
XceI RCATGY 1 cut(s) 962
XspI CTAG 1 cut(s) 12
ZrmI AGTACT 1 cut(s) 329
Zsp2I ATGCAT 1 cut(s) 964
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.