RLG00000028972

Belongs to the sterol desaturase family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Reverse (-)
30884398 .. 30888716
4319 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028972

Sequence Viewer

Length: 1881 bp
ATGGCTTCCACTCCTGGCATTCTCACAGACTGGCCATGGACGCCTCTCGGAAGCTGCAAGTACGTGGTTTTGGCTCCTTGGGTGGTTCACGGCACATACTCGTTCATGGTTAACCAAGGACCTGATAGAGATCTGTCTTACTTTCTCATACTTCCATTCATGCTGTGGAGGATGCTCCACAACCAGTTATGGATCTCTCTTTCCCGATATCGAACCGCCAAAGGCAAAGGCCGGATCGTCGACAAGGGACTCGAATTCGAACAAGTCGACAGAGAAAGAAACTGGGATGACCAGATAATATTCAACGGAATATTGTTCTACCTAGGCAGCAGGCACCTGCCTGGGGCTCAAAACCTACCATTGTGGAGGGGAGATGGGTTCGTTATGACGTTTCTGATTCATGCCGGTCCGGTGGAGTTTCTCTACTACTGGTTTCACAGAGCTCTTCACCACCATTTCCTCTACTCTCGCTACCATTCCCACCACCATTCCTCCATTGTCACCGAGCCTATTACTTCTGTGATTCACCCTTTTGCGGAACACATAGCATATTTCATCCTCTTCGCAATACCAATGGTGACAATGGTGTTTACGGGGACAGGTTCAGTCGGATCATATTTGATGTATGTTACTTACATTGACTTTATGAACAACATGGGGCACTGCAATTTCGAGCTCATTCCCAACTGGATATTTTCTATTTTTCCTCCTCTTAAGTACCTCATGTACACTCCCTCGTTTCACTCTCTTCACCACACACAATTCCGGACCAATTACTCCCTCTTCATGCCCATCTACGACTACATATACGGCACCATGGACAACTCTTCCGATTCTCTGTATGAATCTTCGCTCAAAAGAGAGGAGGAATCGCCCGATGTGTTGCATCTAACCCATCTAACAACCCCTGAATCCATCTATCAACTACCTGTAGGGTTTGCTTCCTTGGCCTCTAAGCCACACACGTCAACGTGGTTCTTATGGTTGATGTGGCCAGTCACACTGTGGTCTATGCTGCTCACTTGGATTTACGGCCGAACTTTTGTGGTTGAGAGGCAGCGCTTTGAGAAACTTAAATTGCAAACTTGGGCTATACCGAAATACAGTTTGCAGTACTTCTTGGAATGGCAAAACGAAGCTATCAACGGCTTGATTGAGGAAGCTATACTTGAAGCTGAGGAAAAGGGTGTCAAAGTTTTGAGTTTAGGTCTCTTGAATCAGAGTGAGGAGCTGAATAGATACGGTGGCCTATATGTTCACAGGAATCCACAGCTGAAAATCAAGGTGGTGGATGGAAGTAGCTTAGCTGTGGCTGTCATCCTCAACAGCATTCCTAAAGGGACAACCCAAGTTCTTCTTAGAGGCAACCTCACTAAGGTTGCTTATGCCCTTGCCCTTTCGTTGTGTCAGAGGGGAATCCAGGTAGCTACACTACACCAGTCTGATTATTTGAAGCTTACCGAATCATTCAATGCCACTGAGAGTAAGCTGGTTCTTGCAAAGAGCTGTGCTGCAAAGATCTGGTTAGTGGGAGATAGATTGAGTAAAGAAGAACAATTGAATGCACCAAAAGGAACTATATTTGTTCCCTTCTCCCAAATTCCACCCAAAAAATTGCGCAAAGACTGCTACTACCACTGCACTCCAGCCATGAAGACTCCTACGTCACTCGAGAACATTTACTCTTGTGAGAACTGGTTGCCAAGAAGGGTGATGAGTGCGTGGCGCATTGCCGGAATAGTGCATGCCTTAGAAGGTTGGAATGGGCACGAGTGTGGTCACACCATGTCCGACATTAGCAAAGTTTGGCAAGCAACTATTCGACATGGCTTCCAACCTCTGACCACCACGGCCACTACTCAGACAAAATTAAATCAGTAA

Protein Analysis

627

Amino Acids

72.2

Weight (kDa)

8.55

Isoelectric Point (pI)

32.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FA_hydroxylase PF04116 135 - 272 4.3e-21 Fatty acid hydroxylase
CER1-like_C PF12076 451 - 613 1.9e-72 CER1-like, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000300)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02190 AT1G02190 AT1G02205 AT1G02205 AT1G02205 AT1G02205 AT1G02205 AT2G37700 AT2G37700 AT2G37700 AT2G37700
fragaria_vesca FvH4_1g22160 FvH4_7g08560 FvH4_7g08560 FvH4_7g08560 FvH4_7g08570 FvH4_7g08570 FvH4_7g08590 FvH4_7g08590
malus_domestica MD02G1226900.v1.1 MD07G1083700.v1.1 MD07G1083800.v1.1 MD07G1086200.v1.1 MD07G1086300.v1.1 MD07G1086700.v1.1 MD13G1075600.v1.1
prunus_persica Prupe.2G112600_v2.0.a1 Prupe.2G112800_v2.0.a1 Prupe.2G113000_v2.0.a1 Prupe.2G113500_v2.0.a1 Prupe.2G113600_v2.0.a1
pyrus_communis pycom02g19600 pycom02g19610 pycom07g06920 pycom07g06930
rosa_chinensis RchiOBHm_Chr1g0343261 RchiOBHm_Chr1g0343301 RchiOBHm_Chr1g0343371 RchiOBHm_Chr1g0343431 RchiOBHm_Chr1g0343441 RchiOBHm_Chr1g0343521 RchiOBHm_Chr1g0343691 RchiOBHm_Chr1g0343791
rosa_laevigata RLG00000028951 RLG00000028953 RLG00000028965 RLG00000028968 RLG00000028969 RLG00000028971 RLG00000028972 RLG00000028974 RLG00000029891
rosa_multiflora Rmu_sc0000021.1_g000002 Rmu_sc0000335.1_g000046 Rmu_sc0000335.1_g000047 Rmu_sc0000335.1_g000058 Rmu_sc0000335.1_g000061 Rmu_sc0000335.1_g000106 Rmu_sc0000335.1_g000125 Rmu_sc0000544.1_g000010 Rmu_sc0003430.1_g000012 Rmu_sc0005796.1_g000004 Rmu_sc0028268.1_g000001 Rmu_ssc0000259.1_g000038
rosa_roxburghii Rroxscaffold_2G00110090 Rroxscaffold_4G00310350 Rroxscaffold_4G00310610 Rroxscaffold_4G00310710 Rroxscaffold_4G00310740 Rroxscaffold_4G00310760 Rroxscaffold_4G00321110
rosa_rugosa Rorug01G0080100 Rorug01G0080200 Rorug01G0166400 Rorug01G0166500 Rorug01G0166500 Rorug01G0166600 Rorug01G0166700 Rorug01G0166800 Rorug01G0168400 Rorug01G0168500 Rorug01G0168800 Rorug03G0241300 Rorug03G0241400 Rorug04G0001200 Rorug06G0031500 Rorug06G0073200 Rorug06G0264000
rosa_samantha Rh1AG098100 Rh1AG181800 Rh1AG182100 Rh1AG182400 Rh1AG183000 Rh1AG183600 Rh1AG184300 Rh1AG185400 Rh1BG104000 Rh1BG150000 Rh1BG150400 Rh1BG152100 Rh1BG152300 Rh1CG168600 Rh1CG168900 Rh1CG169000 Rh1CG169700 Rh1CG170500 Rh1CG171200 Rh1DG182000 Rh1DG182300 Rh1DG184000 Rh1DG184200
rosa_wichuraiana Rw0G012940 Rw1G007640 Rw1G007670 Rw1G011320 Rw1G015090 Rw1G015110 Rw1G015130 Rw1G015150 Rw1G015290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 345
AasI GACNNNNNNGTC 1 cut(s) 1663
Acc16I TGCGCA 1 cut(s) 1619
Acc36I ACCTGC 1 cut(s) 345
AccB1I GGYRCC 2 cut(s) 333, 812
AccI GTMKAC 2 cut(s) 240, 267
AccIII TCCGGA 1 cut(s) 765
AciI CCGC 2 cut(s) 216, 536
AclWI GGATC 3 cut(s) 200, 242, 619
AcoI YGGCCR 4 cut(s) 32, 992, 1033, 1851
AcsI RAATTY 2 cut(s) 254, 1599
AcyI GRCGYC 1 cut(s) 41
AdeI CACNNNGTG 1 cut(s) 1005
AfaI GTAC 4 cut(s) 62, 719, 728, 1115
AfeI AGCGCT 1 cut(s) 1061
AfiI CCNNNNNNNGG 3 cut(s) 343, 535, 1375
AflII CTTAAG 1 cut(s) 713
AflIII ACRYGT 1 cut(s) 963
AgsI TTSAA 6 cut(s) 304, 1172, 1216, 1453, 1471, 1561
AjiI CACGTC 1 cut(s) 966
AjnI CCWGG 3 cut(s) 13, 340, 1419
AleI CACNNNNGTG 1 cut(s) 1773
Alw21I GWGCWC 2 cut(s) 445, 678
Alw26I GTCTC 1 cut(s) 1214
AlwI GGATC 3 cut(s) 200, 242, 619
Ama87I CYCGRG 1 cut(s) 1670
Aor13HI TCCGGA 1 cut(s) 765
Aor51HI AGCGCT 1 cut(s) 1061
AoxI GGCC 7 cut(s) 32, 229, 948, 992, 1033, 1246, 1851
ApeKI GCWGC 5 cut(s) 54, 327, 1015, 1057, 1511
ApoI RAATTY 2 cut(s) 254, 1599
AspA2I CCTAGG 1 cut(s) 322
AspLEI GCGC 3 cut(s) 1062, 1620, 1728
AspS9I GGNCC 3 cut(s) 119, 407, 768
AsuHPI GGTGA 6 cut(s) 440, 493, 518, 589, 743, 1723
AsuII TTCGAA 1 cut(s) 258
AvaI CYCGRG 1 cut(s) 1670
AvaII GGWCC 3 cut(s) 119, 407, 768
AvrII CCTAGG 1 cut(s) 322
BaeGI GKGCMC 2 cut(s) 663, 1770
BalI TGGCCA 2 cut(s) 34, 994
BanI GGYRCC 2 cut(s) 333, 812
BanII GRGCYC 3 cut(s) 349, 445, 678
BauI CACGAG 1 cut(s) 1769
BbsI GAAGAC 1 cut(s) 1661
Bbv12I GWGCWC 2 cut(s) 445, 678
BbvCI CCTCAGC 1 cut(s) 1176
BbvI GCAGC 5 cut(s) 41, 339, 1002, 1069, 1498
BccI CCATC 5 cut(s) 368, 800, 903, 923, 1286
BceAI ACGGC 5 cut(s) 106, 826, 1048, 1162, 1866
BciT130I CCWGG 3 cut(s) 15, 342, 1421
BcoDI GTCTC 1 cut(s) 1214
BfaI CTAG 1 cut(s) 323
BfmI CTRYAG 1 cut(s) 930
BfoI RGCGCY 1 cut(s) 1063
BfrI CTTAAG 1 cut(s) 713
BfuAI ACCTGC 1 cut(s) 345
BglII AGATCT 2 cut(s) 130, 1518
BisI GCNGC 5 cut(s) 55, 328, 1016, 1058, 1512
BlnI CCTAGG 1 cut(s) 322
BlpI GCTNAGC 1 cut(s) 1303
BlsI GCNGC 5 cut(s) 56, 329, 1017, 1059, 1513
BmcAI AGTACT 1 cut(s) 1115
Bme1390I CCNGG 3 cut(s) 15, 342, 1421
Bme18I GGWCC 3 cut(s) 119, 407, 768
BmeT110I CYCGRG 1 cut(s) 1670
BmgBI CACGTC 1 cut(s) 966
BmgT120I GGNCC 3 cut(s) 119, 407, 768
BmiI GGNNCC 3 cut(s) 75, 335, 814
BmrFI CCNGG 3 cut(s) 15, 342, 1421
BmrI ACTGGG 1 cut(s) 292
BmsI GCATC 2 cut(s) 162, 895
BmuI ACTGGG 1 cut(s) 292
BpiI GAAGAC 1 cut(s) 1661
BplI GAGNNNNNCTC 2 cut(s) 1353, 1385
BpmI CTGGAG 1 cut(s) 1629
Bpu10I CCTNAGC 1 cut(s) 1176
Bpu1102I GCTNAGC 1 cut(s) 1303
Bpu14I TTCGAA 1 cut(s) 258
BsaAI YACGTR 1 cut(s) 64
BsaBI GATNNNNATC 1 cut(s) 129
BsaHI GRCGYC 1 cut(s) 41
BsaI GGTCTC 1 cut(s) 1214
BsaJI CCNNGG 8 cut(s) 35, 77, 115, 322, 341, 816, 945, 1848
BsaWI WCCGGW 2 cut(s) 409, 765
BsaXI ACNNNNNCTCC 2 cut(s) 476, 506
Bsc4I CCNNNNNNNGG 3 cut(s) 343, 535, 1375
Bse118I RCCGGY 1 cut(s) 404
Bse1I ACTGG 8 cut(s) 35, 184, 287, 434, 692, 995, 1438, 1700
Bse3DI GCAATG 1 cut(s) 1728
Bse8I GATNNNNATC 1 cut(s) 129
BseAI TCCGGA 1 cut(s) 765
BseBI CCWGG 3 cut(s) 15, 342, 1421
BseDI CCNNGG 8 cut(s) 35, 77, 115, 322, 341, 816, 945, 1848
BseGI GGATG 5 cut(s) 177, 292, 555, 1297, 1317
BseJI GATNNNNATC 1 cut(s) 129
BseLI CCNNNNNNNGG 3 cut(s) 343, 535, 1375
BseMI GCAATG 1 cut(s) 1728
BseMII CTCAG 3 cut(s) 1167, 1470, 1874
BseNI ACTGG 8 cut(s) 35, 184, 287, 434, 692, 995, 1438, 1700
BseRI GAGGAG 3 cut(s) 699, 878, 1241
BseSI GKGCMC 2 cut(s) 663, 1770
BseX3I CGGCCG 1 cut(s) 1033
BseXI GCAGC 5 cut(s) 41, 339, 1002, 1069, 1498
BsgI GTGCAG 1 cut(s) 1624
Bsh1285I CGRYCG 1 cut(s) 1036
BshFI GGCC 7 cut(s) 34, 231, 950, 994, 1035, 1248, 1853
BshNI GGYRCC 2 cut(s) 333, 812
BsiEI CGRYCG 1 cut(s) 1036
BsiHKAI GWGCWC 2 cut(s) 445, 678
BsiHKCI CYCGRG 1 cut(s) 1670
BsiSI CCGG 5 cut(s) 232, 405, 410, 766, 1734
BslFI GGGAC 3 cut(s) 261, 610, 1354
BslI CCNNNNNNNGG 3 cut(s) 343, 535, 1375
BsmAI GTCTC 1 cut(s) 1214
BsmFI GGGAC 3 cut(s) 261, 610, 1354
BsmI GAATGC 3 cut(s) 18, 1329, 1567
BsnI GGCC 7 cut(s) 34, 231, 950, 994, 1035, 1248, 1853
Bso31I GGTCTC 1 cut(s) 1214
BsoBI CYCGRG 1 cut(s) 1670
Bsp119I TTCGAA 1 cut(s) 258
Bsp1286I GDGCHC 5 cut(s) 349, 445, 663, 678, 1770
Bsp13I TCCGGA 1 cut(s) 765
Bsp1407I TGTACA 1 cut(s) 726
Bsp143I GATC 5 cut(s) 130, 192, 234, 611, 1518
Bsp1720I GCTNAGC 1 cut(s) 1303
Bsp19I CCATGG 2 cut(s) 35, 816
BspACI CCGC 2 cut(s) 216, 536
BspANI GGCC 7 cut(s) 34, 231, 950, 994, 1035, 1248, 1853
BspCNI CTCAG 3 cut(s) 1168, 1471, 1873
BspEI TCCGGA 1 cut(s) 765
BspLI GGNNCC 3 cut(s) 75, 335, 814
BspMI ACCTGC 1 cut(s) 345
BspPI GGATC 3 cut(s) 200, 242, 619
BspQI GCTCTTC 1 cut(s) 450
BspT104I TTCGAA 1 cut(s) 258
BspT107I GGYRCC 2 cut(s) 333, 812
BspTI CTTAAG 1 cut(s) 713
BspTNI GGTCTC 1 cut(s) 1214
BsrDI GCAATG 1 cut(s) 1728
BsrFI RCCGGY 1 cut(s) 404
BsrGI TGTACA 1 cut(s) 726
BsrI ACTGG 8 cut(s) 35, 184, 287, 434, 692, 995, 1438, 1700
BssAI RCCGGY 1 cut(s) 404
BssECI CCNNGG 8 cut(s) 35, 77, 115, 322, 341, 816, 945, 1848
BssMI GATC 5 cut(s) 130, 192, 234, 611, 1518
BssNI GRCGYC 1 cut(s) 41
BssSI CACGAG 1 cut(s) 1769
BssT1I CCWWGG 6 cut(s) 35, 77, 115, 322, 816, 945
Bst2BI CACGAG 1 cut(s) 1769
Bst2UI CCWGG 3 cut(s) 15, 342, 1421
Bst4CI ACNGT 3 cut(s) 1005, 1106, 1244
Bst6I CTCTTC 5 cut(s) 450, 566, 753, 788, 832
BstACI GRCGYC 1 cut(s) 41
BstAFI CTTAAG 1 cut(s) 713
BstAPI GCANNNNNTGC 1 cut(s) 1626
BstAUI TGTACA 1 cut(s) 726
BstBAI YACGTR 1 cut(s) 64
BstBI TTCGAA 1 cut(s) 258
BstC8I GCNNGC 3 cut(s) 332, 1746, 1812
BstDEI CTNAG 8 cut(s) 954, 1176, 1303, 1358, 1374, 1479, 1750, 1860
BstDSI CCRYGG 3 cut(s) 35, 816, 1848
BstENI CCTNNNNNAGG 1 cut(s) 1373
BstF5I GGATG 5 cut(s) 177, 292, 555, 1297, 1317
BstH2I RGCGCY 1 cut(s) 1063
BstHHI GCGC 3 cut(s) 1062, 1620, 1728
BstKTI GATC 5 cut(s) 133, 195, 237, 614, 1521
BstMAI GTCTC 1 cut(s) 1214
BstMBI GATC 5 cut(s) 130, 192, 234, 611, 1518
BstMCI CGRYCG 1 cut(s) 1036
BstMWI GCNNNNNNNGC 3 cut(s) 40, 947, 1626
BstNI CCWGG 3 cut(s) 15, 342, 1421
BstNSI RCATGY 1 cut(s) 1748
BstSCI CCNGG 3 cut(s) 13, 340, 1419
BstSFI CTRYAG 1 cut(s) 930
BstSLI GKGCMC 2 cut(s) 663, 1770
BstV1I GCAGC 5 cut(s) 41, 339, 1002, 1069, 1498
BstV2I GAAGAC 1 cut(s) 1661
BstX2I RGATCY 3 cut(s) 130, 192, 1518
BstYI RGATCY 3 cut(s) 130, 192, 1518
BstZI CGGCCG 1 cut(s) 1033
BsuRI GGCC 7 cut(s) 34, 231, 950, 994, 1035, 1248, 1853
BtgI CCRYGG 3 cut(s) 35, 816, 1848
BtrI CACGTC 1 cut(s) 966
BtsCI GGATG 5 cut(s) 177, 292, 555, 1297, 1317
BtsI GCAGTG 2 cut(s) 661, 1636
BtsIMutI CAGTG 4 cut(s) 661, 1001, 1476, 1636
BveI ACCTGC 1 cut(s) 345
Cac8I GCNNGC 3 cut(s) 332, 1746, 1812
CfoI GCGC 3 cut(s) 1062, 1620, 1728
Cfr10I RCCGGY 1 cut(s) 404
Cfr13I GGNCC 3 cut(s) 119, 407, 768
CpoI CGGWCCG 1 cut(s) 407
CseI GACGC 1 cut(s) 49
Csp6I GTAC 4 cut(s) 61, 718, 727, 1114
CspI CGGWCCG 1 cut(s) 407
CviQI GTAC 4 cut(s) 61, 718, 727, 1114
DdeI CTNAG 8 cut(s) 954, 1176, 1303, 1358, 1374, 1479, 1750, 1860
DpnI GATC 5 cut(s) 132, 194, 236, 613, 1520
DpnII GATC 5 cut(s) 130, 192, 234, 611, 1518
DraIII CACNNNGTG 1 cut(s) 1005
DrdI GACNNNNNNGTC 1 cut(s) 1663
DseDI GACNNNNNNGTC 1 cut(s) 1663
EaeI YGGCCR 4 cut(s) 32, 992, 1033, 1851
EagI CGGCCG 1 cut(s) 1033
Eam1104I CTCTTC 5 cut(s) 450, 566, 753, 788, 832
EarI CTCTTC 5 cut(s) 450, 566, 753, 788, 832
Ecl136II GAGCTC 2 cut(s) 443, 676
EclXI CGGCCG 1 cut(s) 1033
Eco130I CCWWGG 6 cut(s) 35, 77, 115, 322, 816, 945
Eco24I GRGCYC 3 cut(s) 349, 445, 678
Eco31I GGTCTC 1 cut(s) 1214
Eco32I GATATC 1 cut(s) 209
Eco47I GGWCC 3 cut(s) 119, 407, 768
Eco47III AGCGCT 1 cut(s) 1061
Eco52I CGGCCG 1 cut(s) 1033
Eco53kI GAGCTC 2 cut(s) 443, 676
Eco88I CYCGRG 1 cut(s) 1670
EcoICRI GAGCTC 2 cut(s) 443, 676
EcoNI CCTNNNNNAGG 1 cut(s) 1373
EcoO109I RGGNCCY 1 cut(s) 119
EcoRI GAATTC 1 cut(s) 254
EcoRII CCWGG 3 cut(s) 13, 340, 1419
EcoRV GATATC 1 cut(s) 209
EcoT14I CCWWGG 6 cut(s) 35, 77, 115, 322, 816, 945
EcoT38I GRGCYC 3 cut(s) 349, 445, 678
ErhI CCWWGG 6 cut(s) 35, 77, 115, 322, 816, 945
FalI AAGNNNNNCTT 4 cut(s) 1152, 1184, 1341, 1373
FaqI GGGAC 3 cut(s) 261, 610, 1354
FblI GTMKAC 2 cut(s) 240, 267
Fnu4HI GCNGC 5 cut(s) 55, 328, 1016, 1058, 1512
FokI GGATG 5 cut(s) 184, 299, 542, 1304, 1304
FriOI GRGCYC 3 cut(s) 349, 445, 678
Fsp4HI GCNGC 5 cut(s) 55, 328, 1016, 1058, 1512
FspBI CTAG 1 cut(s) 323
FspI TGCGCA 1 cut(s) 1619
GlaI GCGC 3 cut(s) 1061, 1619, 1727
GluI GCNGC 5 cut(s) 55, 328, 1016, 1058, 1512
GsuI CTGGAG 1 cut(s) 1629
HaeII RGCGCY 1 cut(s) 1063
HaeIII GGCC 7 cut(s) 34, 231, 950, 994, 1035, 1248, 1853
HapII CCGG 5 cut(s) 232, 405, 410, 766, 1734
HgaI GACGC 1 cut(s) 49
HhaI GCGC 3 cut(s) 1062, 1620, 1728
Hin1I GRCGYC 1 cut(s) 41
Hin6I GCGC 3 cut(s) 1060, 1618, 1726
HinP1I GCGC 3 cut(s) 1060, 1618, 1726
HincII GTYRAC 4 cut(s) 112, 241, 268, 969
HindII GTYRAC 4 cut(s) 112, 241, 268, 969
HindIII AAGCTT 1 cut(s) 1454
HpaI GTTAAC 1 cut(s) 112
HpaII CCGG 5 cut(s) 232, 405, 410, 766, 1734
HphI GGTGA 6 cut(s) 440, 493, 518, 589, 743, 1723
Hpy166II GTNNAC 8 cut(s) 88, 112, 241, 268, 591, 729, 969, 1258
Hpy188III TCNNGA 4 cut(s) 204, 766, 1213, 1672
Hpy8I GTNNAC 8 cut(s) 88, 112, 241, 268, 591, 729, 969, 1258
Hpy99I CGWCG 1 cut(s) 242
HpyAV CCTTC 3 cut(s) 1600, 1701, 1748
HpyCH4III ACNGT 3 cut(s) 1005, 1106, 1244
HpyCH4IV ACGT 5 cut(s) 63, 389, 965, 971, 1664
HpyF10VI GCNNNNNNNGC 3 cut(s) 40, 947, 1626
HpyF3I CTNAG 8 cut(s) 954, 1176, 1303, 1358, 1374, 1479, 1750, 1860
HpySE526I ACGT 5 cut(s) 63, 389, 965, 971, 1664
Hsp92I GRCGYC 1 cut(s) 41
HspAI GCGC 3 cut(s) 1060, 1618, 1726
Kpn2I TCCGGA 1 cut(s) 765
KspAI GTTAAC 1 cut(s) 112
Kzo9I GATC 5 cut(s) 130, 192, 234, 611, 1518
LguI GCTCTTC 1 cut(s) 450
LmnI GCTCC 3 cut(s) 79, 180, 1228
Lsp1109I GCAGC 5 cut(s) 41, 339, 1002, 1069, 1498
LweI GCATC 2 cut(s) 162, 895
MaeI CTAG 1 cut(s) 323
MaeII ACGT 5 cut(s) 63, 389, 965, 971, 1664
MaeIII GTNAC 6 cut(s) 499, 577, 628, 997, 1665, 1778
MalI GATC 5 cut(s) 132, 194, 236, 613, 1520
MboI GATC 5 cut(s) 130, 192, 234, 611, 1518
MboII GAAGA 9 cut(s) 437, 553, 740, 775, 819, 840, 1346, 1562, 1666
MfeI CAATTG 1 cut(s) 1556
MflI RGATCY 3 cut(s) 130, 192, 1518
MhlI GDGCHC 5 cut(s) 349, 445, 663, 678, 1770
MlsI TGGCCA 2 cut(s) 34, 994
MluCI AATT 9 cut(s) 254, 667, 761, 772, 1076, 1556, 1599, 1613, 1868
MluNI TGGCCA 2 cut(s) 34, 994
MlyI GAGTC 2 cut(s) 243, 1651
MmeI TCCRAC 4 cut(s) 589, 1739, 1815, 1858
Mox20I TGGCCA 2 cut(s) 34, 994
MroI TCCGGA 1 cut(s) 765
MscI TGGCCA 2 cut(s) 34, 994
MseI TTAA 4 cut(s) 111, 714, 1074, 1871
MslI CAYNNNNRTG 1 cut(s) 1773
Msp20I TGGCCA 2 cut(s) 34, 994
MspA1I CMGCKG 1 cut(s) 1273
MspCI CTTAAG 1 cut(s) 713
MspI CCGG 5 cut(s) 232, 405, 410, 766, 1734
MspR9I CCNGG 3 cut(s) 15, 342, 1421
MunI CAATTG 1 cut(s) 1556
Mva1269I GAATGC 3 cut(s) 18, 1329, 1567
MvaI CCWGG 3 cut(s) 15, 342, 1421
MwoI GCNNNNNNNGC 3 cut(s) 40, 947, 1626
NcoI CCATGG 2 cut(s) 35, 816
NdeII GATC 5 cut(s) 130, 192, 234, 611, 1518
NlaIV GGNNCC 3 cut(s) 75, 335, 814
NmuCI GTSAC 5 cut(s) 499, 577, 997, 1665, 1778
NsbI TGCGCA 1 cut(s) 1619
NspI RCATGY 1 cut(s) 1748
NspV TTCGAA 1 cut(s) 258
OliI CACNNNNGTG 1 cut(s) 1773
PaeI GCATGC 1 cut(s) 1748
PaeR7I CTCGAG 1 cut(s) 1670
PaqCI CACCTGC 1 cut(s) 345
PciSI GCTCTTC 1 cut(s) 450
PcsI WCGNNNNNNNCGW 1 cut(s) 264
PctI GAATGC 3 cut(s) 18, 1329, 1567
PkrI GCNGC 5 cut(s) 56, 329, 1017, 1059, 1513
PleI GAGTC 2 cut(s) 243, 1651
PpsI GAGTC 2 cut(s) 243, 1651
Ppu21I YACGTR 1 cut(s) 64
PpuMI RGGWCCY 1 cut(s) 119
Psp124BI GAGCTC 2 cut(s) 445, 678
Psp5II RGGWCCY 1 cut(s) 119
Psp6I CCWGG 3 cut(s) 13, 340, 1419
PspGI CCWGG 3 cut(s) 13, 340, 1419
PspN4I GGNNCC 3 cut(s) 75, 335, 814
PspPI GGNCC 3 cut(s) 119, 407, 768
PspPPI RGGWCCY 1 cut(s) 119
PsuI RGATCY 3 cut(s) 130, 192, 1518
PvuII CAGCTG 1 cut(s) 1273
RsaI GTAC 4 cut(s) 62, 719, 728, 1115
RsaNI GTAC 4 cut(s) 61, 718, 727, 1114
RseI CAYNNNNRTG 1 cut(s) 1773
Rsr2I CGGWCCG 1 cut(s) 407
RsrII CGGWCCG 1 cut(s) 407
SacI GAGCTC 2 cut(s) 445, 678
SalI GTCGAC 2 cut(s) 239, 266
SapI GCTCTTC 1 cut(s) 450
SaqAI TTAA 4 cut(s) 111, 714, 1074, 1871
SatI GCNGC 5 cut(s) 55, 328, 1016, 1058, 1512
Sau3AI GATC 5 cut(s) 130, 192, 234, 611, 1518
Sau96I GGNCC 3 cut(s) 119, 407, 768
ScaI AGTACT 1 cut(s) 1115
SchI GAGTC 2 cut(s) 243, 1651
ScrFI CCNGG 3 cut(s) 15, 342, 1421
SduI GDGCHC 5 cut(s) 349, 445, 663, 678, 1770
SfaNI GCATC 2 cut(s) 162, 895
SfcI CTRYAG 1 cut(s) 930
Sfr274I CTCGAG 1 cut(s) 1670
SfuI TTCGAA 1 cut(s) 258
SinI GGWCC 3 cut(s) 119, 407, 768
SlaI CTCGAG 1 cut(s) 1670
SmiMI CAYNNNNRTG 1 cut(s) 1773
SmlI CTYRAG 2 cut(s) 713, 1670
SmoI CTYRAG 2 cut(s) 713, 1670
SphI GCATGC 1 cut(s) 1748
Sse9I AATT 9 cut(s) 254, 667, 761, 772, 1076, 1556, 1599, 1613, 1868
SsiI CCGC 2 cut(s) 216, 536
SspI AATATT 2 cut(s) 300, 312
SspMI CTAG 1 cut(s) 323
SstI GAGCTC 2 cut(s) 445, 678
StyD4I CCNGG 3 cut(s) 13, 340, 1419
StyI CCWWGG 6 cut(s) 35, 77, 115, 322, 816, 945
TaaI ACNGT 3 cut(s) 1005, 1106, 1244
TaiI ACGT 5 cut(s) 66, 392, 968, 974, 1667
TaqI TCGA 8 cut(s) 211, 240, 252, 258, 267, 672, 1671, 1822
TasI AATT 9 cut(s) 254, 667, 761, 772, 1076, 1556, 1599, 1613, 1868
TatI WGTACW 2 cut(s) 726, 1113
Tru1I TTAA 4 cut(s) 111, 714, 1074, 1871
Tru9I TTAA 4 cut(s) 111, 714, 1074, 1871
TscAI CASTG 4 cut(s) 668, 1008, 1483, 1643
TseFI GTSAC 5 cut(s) 499, 577, 997, 1665, 1778
TseI GCWGC 5 cut(s) 54, 327, 1015, 1057, 1511
Tsp45I GTSAC 5 cut(s) 499, 577, 997, 1665, 1778
TspDTI ATGAA 8 cut(s) 94, 148, 389, 544, 662, 775, 858, 1667
TspGWI ACGGA 1 cut(s) 321
TspRI CASTG 4 cut(s) 668, 1008, 1483, 1643
Vha464I CTTAAG 1 cut(s) 713
VpaK11BI GGWCC 3 cut(s) 119, 407, 768
XagI CCTNNNNNAGG 1 cut(s) 1373
XapI RAATTY 2 cut(s) 254, 1599
XceI RCATGY 1 cut(s) 1748
XcmI CCANNNNNNNNNTGG 2 cut(s) 162, 1002
XhoI CTCGAG 1 cut(s) 1670
XmaJI CCTAGG 1 cut(s) 322
XmiI GTMKAC 2 cut(s) 240, 267
XspI CTAG 1 cut(s) 323
ZrmI AGTACT 1 cut(s) 1115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.