Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000544.1

Orthogroup ID

OG0000300

Physical Location & Seq

Genomic Coordinates Forward (+)

49305 .. 50108

Gene Structure 804 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000544.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

atggcttccacacctggaattcttactgactggccatggacacctcttgggagctttaagtacgtggtgttagctccttgggtgattcacagcacatactcacatatgtttggagaagaaggcacagatctattttacatcctcgtatttccatttctgttgtggaggatgctccacaaccagatatggatctcactttctcgctatcgaactgccaaaggcaaaggaacaatcgtggacaagggcctcgaatttgaacaagtcgacagagaaagagattgggatgatcaaatcatattcaatggaatcctattttacatagtcaggtgcgtcctgcctatggctcaaactgacctaccaatttggaggggaaatgggttggtcatgacgatgctgcttcatgctggtccggtagagtacctctactactggttacacagagcacttcaccaccatttcctctactctcgctaccattctcatcaccattcctctattgtcactgagccaattacttgtaagacatatctatatatcctaaaactacacatattgccttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0008150 GO:0008152 GO:0012505 GO:0016020 GO:0016491 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071704 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko00073 ko01110 map00073 map01110

Pfam Domains

Protein Families

FA_hydroxylase Wax2_C

Protein Analysis

186

Amino Acids

22.03

Weight (kDa)

7.24

Isoelectric Point (pI)

23.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000300)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02190 AT1G02190 AT1G02205 AT1G02205 AT1G02205 AT1G02205 AT1G02205 AT2G37700 AT2G37700 AT2G37700 AT2G37700
fragaria_vesca	FvH4_1g22160 FvH4_7g08560 FvH4_7g08560 FvH4_7g08560 FvH4_7g08570 FvH4_7g08570 FvH4_7g08590 FvH4_7g08590
malus_domestica	MD02G1226900.v1.1 MD07G1083700.v1.1 MD07G1083800.v1.1 MD07G1086200.v1.1 MD07G1086300.v1.1 MD07G1086700.v1.1 MD13G1075600.v1.1
prunus_persica	Prupe.2G112600_v2.0.a1 Prupe.2G112800_v2.0.a1 Prupe.2G113000_v2.0.a1 Prupe.2G113500_v2.0.a1 Prupe.2G113600_v2.0.a1
pyrus_communis	pycom02g19600 pycom02g19610 pycom07g06920 pycom07g06930
rosa_chinensis	RchiOBHm_Chr1g0343261 RchiOBHm_Chr1g0343301 RchiOBHm_Chr1g0343371 RchiOBHm_Chr1g0343431 RchiOBHm_Chr1g0343441 RchiOBHm_Chr1g0343521 RchiOBHm_Chr1g0343691 RchiOBHm_Chr1g0343791
rosa_laevigata	RLG00000028951 RLG00000028953 RLG00000028965 RLG00000028968 RLG00000028969 RLG00000028971 RLG00000028972 RLG00000028974 RLG00000029891
rosa_multiflora	Rmu_sc0000021.1_g000002 Rmu_sc0000335.1_g000046 Rmu_sc0000335.1_g000047 Rmu_sc0000335.1_g000058 Rmu_sc0000335.1_g000061 Rmu_sc0000335.1_g000106 Rmu_sc0000335.1_g000125 Rmu_sc0000544.1_g000010 Rmu_sc0003430.1_g000012 Rmu_sc0005796.1_g000004 Rmu_sc0028268.1_g000001 Rmu_ssc0000259.1_g000038
rosa_roxburghii	Rroxscaffold_2G00110090 Rroxscaffold_4G00310350 Rroxscaffold_4G00310610 Rroxscaffold_4G00310710 Rroxscaffold_4G00310740 Rroxscaffold_4G00310760 Rroxscaffold_4G00321110
rosa_rugosa	Rorug01G0080100 Rorug01G0080200 Rorug01G0166400 Rorug01G0166500 Rorug01G0166500 Rorug01G0166600 Rorug01G0166700 Rorug01G0166800 Rorug01G0168400 Rorug01G0168500 Rorug01G0168800 Rorug03G0241300 Rorug03G0241400 Rorug04G0001200 Rorug06G0031500 Rorug06G0073200 Rorug06G0264000
rosa_samantha	Rh1AG098100 Rh1AG181800 Rh1AG182100 Rh1AG182400 Rh1AG183000 Rh1AG183600 Rh1AG184300 Rh1AG185400 Rh1BG104000 Rh1BG150000 Rh1BG150400 Rh1BG152100 Rh1BG152300 Rh1CG168600 Rh1CG168900 Rh1CG169000 Rh1CG169700 Rh1CG170500 Rh1CG171200 Rh1DG182000 Rh1DG182300 Rh1DG184000 Rh1DG184200
rosa_wichuraiana	Rw0G012940 Rw1G007640 Rw1G007670 Rw1G011320 Rw1G015090 Rw1G015110 Rw1G015130 Rw1G015150 Rw1G015290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	264
AclWI	GGATC	1 cut(s)	197
AcoI	YGGCCR	1 cut(s)	32
AcsI	RAATTY	2 cut(s)	18, 251
AfaI	GTAC	2 cut(s)	62, 419
AfiI	CCNNNNNNNGG	1 cut(s)	340
AgsI	TTSAA	2 cut(s)	257, 301
AjnI	CCWGG	1 cut(s)	13
AluBI	AGCT	2 cut(s)	54, 74
AluI	AGCT	2 cut(s)	54, 74
Alw21I	GWGCWC	1 cut(s)	445
AlwI	GGATC	1 cut(s)	197
AoxI	GGCC	2 cut(s)	32, 244
ApeKI	GCWGC	1 cut(s)	394
ApoI	RAATTY	2 cut(s)	18, 251
AspS9I	GGNCC	2 cut(s)	244, 407
AsuHPI	GGTGA	3 cut(s)	94, 440, 476
AvaII	GGWCC	1 cut(s)	407
BalI	TGGCCA	1 cut(s)	34
Bbv12I	GWGCWC	1 cut(s)	445
BbvI	GCAGC	1 cut(s)	381
BciT130I	CCWGG	1 cut(s)	15
BclI	TGATCA	1 cut(s)	286
BglII	AGATCT	1 cut(s)	127
BisI	GCNGC	1 cut(s)	395
BlsI	GCNGC	1 cut(s)	396
Bme1390I	CCNGG	1 cut(s)	15
Bme18I	GGWCC	1 cut(s)	407
BmgT120I	GGNCC	2 cut(s)	244, 407
BmrFI	CCNGG	1 cut(s)	15
BmsI	GCATC	2 cut(s)	159, 381
BsaAI	YACGTR	1 cut(s)	64
BsaBI	GATNNNNATC	1 cut(s)	188
BsaJI	CCNNGG	2 cut(s)	35, 77
BsaWI	WCCGGW	1 cut(s)	409
Bsc4I	CCNNNNNNNGG	1 cut(s)	340
Bse1I	ACTGG	2 cut(s)	35, 434
Bse8I	GATNNNNATC	1 cut(s)	188
BseBI	CCWGG	1 cut(s)	15
BseDI	CCNNGG	2 cut(s)	35, 77
BseGI	GGATG	3 cut(s)	138, 174, 289
BseJI	GATNNNNATC	1 cut(s)	188
BseLI	CCNNNNNNNGG	1 cut(s)	340
BseMII	CTCAG	1 cut(s)	495
BseNI	ACTGG	2 cut(s)	35, 434
BseXI	GCAGC	1 cut(s)	381
BshFI	GGCC	2 cut(s)	34, 246
BsiHKAI	GWGCWC	1 cut(s)	445
BsiSI	CCGG	1 cut(s)	410
BslI	CCNNNNNNNGG	1 cut(s)	340
BsnI	GGCC	2 cut(s)	34, 246
Bsp1286I	GDGCHC	1 cut(s)	445
Bsp143I	GATC	3 cut(s)	127, 189, 286
Bsp19I	CCATGG	1 cut(s)	35
BspANI	GGCC	2 cut(s)	34, 246
BspCNI	CTCAG	1 cut(s)	496
BspHI	TCATGA	1 cut(s)	384
BspPI	GGATC	1 cut(s)	197
BsrI	ACTGG	2 cut(s)	35, 434
BssECI	CCNNGG	2 cut(s)	35, 77
BssMI	GATC	3 cut(s)	127, 189, 286
BssT1I	CCWWGG	2 cut(s)	35, 77
Bst2UI	CCWGG	1 cut(s)	15
BstBAI	YACGTR	1 cut(s)	64
BstDEI	CTNAG	1 cut(s)	504
BstDSI	CCRYGG	1 cut(s)	35
BstF5I	GGATG	3 cut(s)	138, 174, 289
BstKTI	GATC	3 cut(s)	130, 192, 289
BstMBI	GATC	3 cut(s)	127, 189, 286
BstNI	CCWGG	1 cut(s)	15
BstSCI	CCNGG	1 cut(s)	13
BstV1I	GCAGC	1 cut(s)	381
BstX2I	RGATCY	2 cut(s)	127, 189
BstYI	RGATCY	2 cut(s)	127, 189
BsuRI	GGCC	2 cut(s)	34, 246
BtgI	CCRYGG	1 cut(s)	35
BtsCI	GGATG	3 cut(s)	138, 174, 289
BtsIMutI	CAGTG	1 cut(s)	501
CciI	TCATGA	1 cut(s)	384
Cfr13I	GGNCC	2 cut(s)	244, 407
CseI	GACGC	1 cut(s)	319
Csp6I	GTAC	2 cut(s)	61, 418
CviAII	CATG	3 cut(s)	36, 385, 401
CviJI	RGCY	7 cut(s)	5, 34, 54, 74, 246, 344, 508
CviKI_1	RGCY	7 cut(s)	5, 34, 54, 74, 246, 344, 508
CviQI	GTAC	2 cut(s)	61, 418
DdeI	CTNAG	1 cut(s)	504
DpnI	GATC	3 cut(s)	129, 191, 288
DpnII	GATC	3 cut(s)	127, 189, 286
EaeI	YGGCCR	1 cut(s)	32
Eco130I	CCWWGG	2 cut(s)	35, 77
Eco47I	GGWCC	1 cut(s)	407
EcoO109I	RGGNCCY	1 cut(s)	244
EcoRI	GAATTC	1 cut(s)	18
EcoRII	CCWGG	1 cut(s)	13
EcoT14I	CCWWGG	2 cut(s)	35, 77
ErhI	CCWWGG	2 cut(s)	35, 77
FaeI	CATG	3 cut(s)	39, 388, 404
FatI	CATG	3 cut(s)	35, 384, 400
FauNDI	CATATG	1 cut(s)	105
FbaI	TGATCA	1 cut(s)	286
FblI	GTMKAC	1 cut(s)	264
Fnu4HI	GCNGC	1 cut(s)	395
FokI	GGATG	3 cut(s)	125, 181, 296
Fsp4HI	GCNGC	1 cut(s)	395
GluI	GCNGC	1 cut(s)	395
HaeIII	GGCC	2 cut(s)	34, 246
HapII	CCGG	1 cut(s)	410
HgaI	GACGC	1 cut(s)	319
Hin1II	CATG	3 cut(s)	39, 388, 404
HincII	GTYRAC	1 cut(s)	265
HindII	GTYRAC	1 cut(s)	265
HinfI	GANTC	2 cut(s)	85, 306
HpaII	CCGG	1 cut(s)	410
HphI	GGTGA	3 cut(s)	94, 440, 476
Hpy166II	GTNNAC	2 cut(s)	238, 265
Hpy188III	TCNNGA	1 cut(s)	385
Hpy8I	GTNNAC	2 cut(s)	238, 265
HpyAV	CCTTC	1 cut(s)	113
HpyCH4IV	ACGT	1 cut(s)	63
HpyF3I	CTNAG	1 cut(s)	504
HpySE526I	ACGT	1 cut(s)	63
Hsp92II	CATG	3 cut(s)	39, 388, 404
Ksp22I	TGATCA	1 cut(s)	286
Kzo9I	GATC	3 cut(s)	127, 189, 286
LmnI	GCTCC	3 cut(s)	51, 79, 177
LpnPI	CCDG	8 cut(s)	16, 27, 194, 310, 347, 390, 415, 423
Lsp1109I	GCAGC	1 cut(s)	381
LweI	GCATC	2 cut(s)	159, 381
MaeII	ACGT	1 cut(s)	63
MaeIII	GTNAC	2 cut(s)	432, 499
MalI	GATC	3 cut(s)	129, 191, 288
MboI	GATC	3 cut(s)	127, 189, 286
MboII	GAAGA	1 cut(s)	128
MflI	RGATCY	2 cut(s)	127, 189
MhlI	GDGCHC	1 cut(s)	445
MlsI	TGGCCA	1 cut(s)	34
MluCI	AATT	4 cut(s)	18, 251, 360, 510
MluNI	TGGCCA	1 cut(s)	34
MnlI	CCTC	8 cut(s)	54, 152, 159, 257, 360, 431, 470, 502
Mox20I	TGGCCA	1 cut(s)	34
MscI	TGGCCA	1 cut(s)	34
MseI	TTAA	1 cut(s)	57
MslI	CAYNNNNRTG	1 cut(s)	389
Msp20I	TGGCCA	1 cut(s)	34
MspI	CCGG	1 cut(s)	410
MspR9I	CCNGG	1 cut(s)	15
MvaI	CCWGG	1 cut(s)	15
NcoI	CCATGG	1 cut(s)	35
NdeI	CATATG	1 cut(s)	105
NdeII	GATC	3 cut(s)	127, 189, 286
NlaIII	CATG	3 cut(s)	39, 388, 404
NmuCI	GTSAC	1 cut(s)	499
PagI	TCATGA	1 cut(s)	384
PfeI	GAWTC	2 cut(s)	85, 306
PkrI	GCNGC	1 cut(s)	396
Ppu21I	YACGTR	1 cut(s)	64
Psp6I	CCWGG	1 cut(s)	13
PspGI	CCWGG	1 cut(s)	13
PspPI	GGNCC	2 cut(s)	244, 407
PsuI	RGATCY	2 cut(s)	127, 189
RsaI	GTAC	2 cut(s)	62, 419
RsaNI	GTAC	2 cut(s)	61, 418
RseI	CAYNNNNRTG	1 cut(s)	389
SalI	GTCGAC	1 cut(s)	263
SaqAI	TTAA	1 cut(s)	57
SatI	GCNGC	1 cut(s)	395
Sau3AI	GATC	3 cut(s)	127, 189, 286
Sau96I	GGNCC	2 cut(s)	244, 407
ScrFI	CCNGG	1 cut(s)	15
SduI	GDGCHC	1 cut(s)	445
SetI	ASST	8 cut(s)	16, 46, 56, 66, 76, 329, 357, 423
SfaNI	GCATC	2 cut(s)	159, 381
SinI	GGWCC	1 cut(s)	407
SmiMI	CAYNNNNRTG	1 cut(s)	389
Sse9I	AATT	4 cut(s)	18, 251, 360, 510
StyD4I	CCNGG	1 cut(s)	13
StyI	CCWWGG	2 cut(s)	35, 77
TaiI	ACGT	1 cut(s)	66
TaqI	TCGA	3 cut(s)	208, 249, 264
TasI	AATT	4 cut(s)	18, 251, 360, 510
TfiI	GAWTC	2 cut(s)	85, 306
Tru1I	TTAA	1 cut(s)	57
Tru9I	TTAA	1 cut(s)	57
TscAI	CASTG	1 cut(s)	508
TseFI	GTSAC	1 cut(s)	499
TseI	GCWGC	1 cut(s)	394
Tsp45I	GTSAC	1 cut(s)	499
TspDTI	ATGAA	1 cut(s)	389
TspRI	CASTG	1 cut(s)	508
VpaK11BI	GGWCC	1 cut(s)	407
XapI	RAATTY	2 cut(s)	18, 251
XcmI	CCANNNNNNNNNTGG	1 cut(s)	159
XmiI	GTMKAC	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.