Rorug01G0168500

Belongs to the sterol desaturase family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Forward (+)
22994663 .. 22994869
207 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0168500.1

Sequence Viewer

Length: 207 bp
ATGATTGTAAGCCAAGTTGGTTCAGGAAATGGTTCCAGAGGCATCCCCAATGATGGTTACTGTTGGATGGGCCCTGAAGACATTGATTACACCCGCCCTGTTACTGCCTGCTCTCAATGTGTTGATATTGCATCTGAGATCTCTCGTTTTCAAGGAGGACAGAACGTATTCGAAGAAGCTAATTTCTGGGGCACAAATGCTGTTTAA

Protein Analysis

68

Amino Acids

7.33

Weight (kDa)

4.07

Isoelectric Point (pI)

32.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000300)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02190 AT1G02190 AT1G02205 AT1G02205 AT1G02205 AT1G02205 AT1G02205 AT2G37700 AT2G37700 AT2G37700 AT2G37700
fragaria_vesca FvH4_1g22160 FvH4_7g08560 FvH4_7g08560 FvH4_7g08560 FvH4_7g08570 FvH4_7g08570 FvH4_7g08590 FvH4_7g08590
malus_domestica MD02G1226900.v1.1 MD07G1083700.v1.1 MD07G1083800.v1.1 MD07G1086200.v1.1 MD07G1086300.v1.1 MD07G1086700.v1.1 MD13G1075600.v1.1
prunus_persica Prupe.2G112600_v2.0.a1 Prupe.2G112800_v2.0.a1 Prupe.2G113000_v2.0.a1 Prupe.2G113500_v2.0.a1 Prupe.2G113600_v2.0.a1
pyrus_communis pycom02g19600 pycom02g19610 pycom07g06920 pycom07g06930
rosa_chinensis RchiOBHm_Chr1g0343261 RchiOBHm_Chr1g0343301 RchiOBHm_Chr1g0343371 RchiOBHm_Chr1g0343431 RchiOBHm_Chr1g0343441 RchiOBHm_Chr1g0343521 RchiOBHm_Chr1g0343691 RchiOBHm_Chr1g0343791
rosa_laevigata RLG00000028951 RLG00000028953 RLG00000028965 RLG00000028968 RLG00000028969 RLG00000028971 RLG00000028972 RLG00000028974 RLG00000029891
rosa_multiflora Rmu_sc0000021.1_g000002 Rmu_sc0000335.1_g000046 Rmu_sc0000335.1_g000047 Rmu_sc0000335.1_g000058 Rmu_sc0000335.1_g000061 Rmu_sc0000335.1_g000106 Rmu_sc0000335.1_g000125 Rmu_sc0000544.1_g000010 Rmu_sc0003430.1_g000012 Rmu_sc0005796.1_g000004 Rmu_sc0028268.1_g000001 Rmu_ssc0000259.1_g000038
rosa_roxburghii Rroxscaffold_2G00110090 Rroxscaffold_4G00310350 Rroxscaffold_4G00310610 Rroxscaffold_4G00310710 Rroxscaffold_4G00310740 Rroxscaffold_4G00310760 Rroxscaffold_4G00321110
rosa_rugosa Rorug01G0080100 Rorug01G0080200 Rorug01G0166400 Rorug01G0166500 Rorug01G0166500 Rorug01G0166600 Rorug01G0166700 Rorug01G0166800 Rorug01G0168400 Rorug01G0168500 Rorug01G0168800 Rorug03G0241300 Rorug03G0241400 Rorug04G0001200 Rorug06G0031500 Rorug06G0073200 Rorug06G0264000
rosa_samantha Rh1AG098100 Rh1AG181800 Rh1AG182100 Rh1AG182400 Rh1AG183000 Rh1AG183600 Rh1AG184300 Rh1AG185400 Rh1BG104000 Rh1BG150000 Rh1BG150400 Rh1BG152100 Rh1BG152300 Rh1CG168600 Rh1CG168900 Rh1CG169000 Rh1CG169700 Rh1CG170500 Rh1CG171200 Rh1DG182000 Rh1DG182300 Rh1DG184000 Rh1DG184200
rosa_wichuraiana Rw0G012940 Rw1G007640 Rw1G007670 Rw1G011320 Rw1G015090 Rw1G015110 Rw1G015130 Rw1G015150 Rw1G015290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 94
AcuI CTGAAG 1 cut(s) 96
AfiI CCNNNNNNNGG 1 cut(s) 53
AgsI TTSAA 1 cut(s) 152
AluBI AGCT 1 cut(s) 179
AluI AGCT 1 cut(s) 179
AoxI GGCC 1 cut(s) 70
ApaI GGGCCC 1 cut(s) 74
Asp700I GAANNNNTTC 2 cut(s) 31, 167
AspS9I GGNCC 2 cut(s) 70, 71
AsuII TTCGAA 1 cut(s) 171
BaeGI GKGCMC 2 cut(s) 74, 194
BanII GRGCYC 1 cut(s) 74
BbsI GAAGAC 1 cut(s) 84
BccI CCATC 2 cut(s) 47, 61
BglII AGATCT 1 cut(s) 138
BmgT120I GGNCC 2 cut(s) 70, 71
BmiI GGNNCC 2 cut(s) 34, 72
BmsI GCATC 2 cut(s) 51, 140
BpiI GAAGAC 1 cut(s) 84
Bpu14I TTCGAA 1 cut(s) 171
Bsc4I CCNNNNNNNGG 1 cut(s) 53
BseGI GGATG 2 cut(s) 42, 72
BseLI CCNNNNNNNGG 1 cut(s) 53
BseMII CTCAG 1 cut(s) 126
BseSI GKGCMC 2 cut(s) 74, 194
BshFI GGCC 1 cut(s) 72
BslI CCNNNNNNNGG 1 cut(s) 53
BsnI GGCC 1 cut(s) 72
Bsp119I TTCGAA 1 cut(s) 171
Bsp120I GGGCCC 1 cut(s) 70
Bsp1286I GDGCHC 2 cut(s) 74, 194
Bsp143I GATC 1 cut(s) 138
BspACI CCGC 1 cut(s) 94
BspANI GGCC 1 cut(s) 72
BspCNI CTCAG 1 cut(s) 127
BspLI GGNNCC 2 cut(s) 34, 72
BspT104I TTCGAA 1 cut(s) 171
BssMI GATC 1 cut(s) 138
Bst4CI ACNGT 1 cut(s) 62
BstBI TTCGAA 1 cut(s) 171
BstC8I GCNNGC 1 cut(s) 109
BstDEI CTNAG 1 cut(s) 135
BstF5I GGATG 2 cut(s) 42, 72
BstKTI GATC 1 cut(s) 141
BstMBI GATC 1 cut(s) 138
BstSLI GKGCMC 2 cut(s) 74, 194
BstV2I GAAGAC 1 cut(s) 84
BstX2I RGATCY 1 cut(s) 138
BstYI RGATCY 1 cut(s) 138
BsuRI GGCC 1 cut(s) 72
BtsCI GGATG 2 cut(s) 42, 72
Cac8I GCNNGC 1 cut(s) 109
Cfr13I GGNCC 2 cut(s) 70, 71
CviJI RGCY 3 cut(s) 12, 72, 179
CviKI_1 RGCY 3 cut(s) 12, 72, 179
DdeI CTNAG 1 cut(s) 135
DpnI GATC 1 cut(s) 140
DpnII GATC 1 cut(s) 138
Eco24I GRGCYC 1 cut(s) 74
Eco57I CTGAAG 1 cut(s) 96
EcoO109I RGGNCCY 1 cut(s) 71
EcoT38I GRGCYC 1 cut(s) 74
FauI CCCGC 1 cut(s) 101
FokI GGATG 2 cut(s) 29, 79
FriOI GRGCYC 1 cut(s) 74
HaeIII GGCC 1 cut(s) 72
Hpy188I TCNGA 1 cut(s) 136
Hpy188III TCNNGA 2 cut(s) 24, 36
HpyCH4III ACNGT 1 cut(s) 62
HpyCH4IV ACGT 1 cut(s) 165
HpyCH4V TGCA 1 cut(s) 131
HpyF3I CTNAG 1 cut(s) 135
HpySE526I ACGT 1 cut(s) 165
Kzo9I GATC 1 cut(s) 138
LpnPI CCDG 6 cut(s) 9, 49, 87, 111, 121, 172
LweI GCATC 2 cut(s) 51, 140
MaeII ACGT 1 cut(s) 165
MaeIII GTNAC 2 cut(s) 56, 100
MalI GATC 1 cut(s) 140
MboI GATC 1 cut(s) 138
MboII GAAGA 2 cut(s) 89, 185
MflI RGATCY 1 cut(s) 138
MhlI GDGCHC 2 cut(s) 74, 194
MluCI AATT 1 cut(s) 181
MmeI TCCRAC 1 cut(s) 44
MnlI CCTC 2 cut(s) 32, 149
MroXI GAANNNNTTC 2 cut(s) 31, 167
MseI TTAA 1 cut(s) 205
NdeII GATC 1 cut(s) 138
NlaIV GGNNCC 2 cut(s) 34, 72
NspV TTCGAA 1 cut(s) 171
PdmI GAANNNNTTC 2 cut(s) 31, 167
PspN4I GGNNCC 2 cut(s) 34, 72
PspOMI GGGCCC 1 cut(s) 70
PspPI GGNCC 2 cut(s) 70, 71
PsuI RGATCY 1 cut(s) 138
SaqAI TTAA 1 cut(s) 205
Sau3AI GATC 1 cut(s) 138
Sau96I GGNCC 2 cut(s) 70, 71
SduI GDGCHC 2 cut(s) 74, 194
SetI ASST 2 cut(s) 168, 181
SfaNI GCATC 2 cut(s) 51, 140
SfuI TTCGAA 1 cut(s) 171
Sse9I AATT 1 cut(s) 181
SsiI CCGC 1 cut(s) 94
TaaI ACNGT 1 cut(s) 62
TaiI ACGT 1 cut(s) 168
TaqI TCGA 1 cut(s) 171
TasI AATT 1 cut(s) 181
Tru1I TTAA 1 cut(s) 205
Tru9I TTAA 1 cut(s) 205
XmnI GAANNNNTTC 2 cut(s) 31, 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.