Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000300

Physical Location & Seq

Genomic Coordinates Reverse (-)

35562548 .. 35567496

Gene Structure 4949 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ56997

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGTGGCCTGTCACACTGTGGTCTGTAATGCTCACTTGGATTTATGGCCGTACATTTGTGGTTGAGAGGCAGCGATTTGATAAACTCAAATTACAAACTTGGTACTTGATGCAATGGGAAAATGACGCTATCAACAACTTGCTTGAGAAAGCTATACTTGAAGCAGAGGAAAAGGGTATTTTCAGCAAATTCCTGTGGGCGGCAGCCGGTCACTGGATTCCGGTTGCCGATGACCGGAATCCGGCAAAGTCTCCTATGAGCGAGGAGCTGAATAGATATGGTGGTTTATATGTCAGCAGGCATCCACAGCTGAAAATTAGGATGGTTGATGGCAGTAGCCTGGTTGTGGCTGTGATACTAAACAGTGTTCCAAAAGAGACAACCCAAGTTCTTCTGAGAGGCAAACTCACAAAGGTTGCTGTTGCCATTGCCTTTGGTTTGATCCAGAGGGGTATAAAGGTTGCTATATTACACCAGGCCGAGTACTGGAAGCTCACCAAATCGTTAAGTGAATCTGAGAGTCGGTTGGTCCTCGAAAAAAACTATGGTCACAAGATTTGGTTAGTGGGAAACGGATTAAGTGAGCAAGAACAGTTGACTGCACCGAAAGGAACAATATTTGTTCCCTTCTCCCAATTCCCACCAAGAAAGTTGCGGAGAGACTGTTACTACCACTGCACTCCAGCCATGAAGATCCCGAAGGCTCTTGAGAAGGAACAATATTTGTTCCCTTCTCCCAATTCCCACCAAGAAAGTTGCGGAGAGACTAACTGGTTGCCAAGGAGGGTGATGAGTGCGTGGCGTATAGCTGGGATAGTGCATGCATTGGAAGGTTGGAATGACCATGAGTGTGGTTATACCATGTCCGATATTGACAAAGTTTGGCAAGCTACTCTTCGACATGGTTTTCAGCCTCTGATCCCCACCACTACTACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0008150 GO:0008152 GO:0012505 GO:0016020 GO:0016491 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071704 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko00073 ko01110 map00073 map01110

Pfam Domains

Protein Families

FA_hydroxylase Wax2_C

Protein Analysis

312

Amino Acids

35.88

Weight (kDa)

9.23

Isoelectric Point (pI)

41.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CER1-like_C	PF12076	130 - 305	3.3e-64	CER1-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000300)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02190 AT1G02190 AT1G02205 AT1G02205 AT1G02205 AT1G02205 AT1G02205 AT2G37700 AT2G37700 AT2G37700 AT2G37700
fragaria_vesca	FvH4_1g22160 FvH4_7g08560 FvH4_7g08560 FvH4_7g08560 FvH4_7g08570 FvH4_7g08570 FvH4_7g08590 FvH4_7g08590
malus_domestica	MD02G1226900.v1.1 MD07G1083700.v1.1 MD07G1083800.v1.1 MD07G1086200.v1.1 MD07G1086300.v1.1 MD07G1086700.v1.1 MD13G1075600.v1.1
prunus_persica	Prupe.2G112600_v2.0.a1 Prupe.2G112800_v2.0.a1 Prupe.2G113000_v2.0.a1 Prupe.2G113500_v2.0.a1 Prupe.2G113600_v2.0.a1
pyrus_communis	pycom02g19600 pycom02g19610 pycom07g06920 pycom07g06930
rosa_chinensis	RchiOBHm_Chr1g0343261 RchiOBHm_Chr1g0343301 RchiOBHm_Chr1g0343371 RchiOBHm_Chr1g0343431 RchiOBHm_Chr1g0343441 RchiOBHm_Chr1g0343521 RchiOBHm_Chr1g0343691 RchiOBHm_Chr1g0343791
rosa_laevigata	RLG00000028951 RLG00000028953 RLG00000028965 RLG00000028968 RLG00000028969 RLG00000028971 RLG00000028972 RLG00000028974 RLG00000029891
rosa_multiflora	Rmu_sc0000021.1_g000002 Rmu_sc0000335.1_g000046 Rmu_sc0000335.1_g000047 Rmu_sc0000335.1_g000058 Rmu_sc0000335.1_g000061 Rmu_sc0000335.1_g000106 Rmu_sc0000335.1_g000125 Rmu_sc0000544.1_g000010 Rmu_sc0003430.1_g000012 Rmu_sc0005796.1_g000004 Rmu_sc0028268.1_g000001 Rmu_ssc0000259.1_g000038
rosa_roxburghii	Rroxscaffold_2G00110090 Rroxscaffold_4G00310350 Rroxscaffold_4G00310610 Rroxscaffold_4G00310710 Rroxscaffold_4G00310740 Rroxscaffold_4G00310760 Rroxscaffold_4G00321110
rosa_rugosa	Rorug01G0080100 Rorug01G0080200 Rorug01G0166400 Rorug01G0166500 Rorug01G0166500 Rorug01G0166600 Rorug01G0166700 Rorug01G0166800 Rorug01G0168400 Rorug01G0168500 Rorug01G0168800 Rorug03G0241300 Rorug03G0241400 Rorug04G0001200 Rorug06G0031500 Rorug06G0073200 Rorug06G0264000
rosa_samantha	Rh1AG098100 Rh1AG181800 Rh1AG182100 Rh1AG182400 Rh1AG183000 Rh1AG183600 Rh1AG184300 Rh1AG185400 Rh1BG104000 Rh1BG150000 Rh1BG150400 Rh1BG152100 Rh1BG152300 Rh1CG168600 Rh1CG168900 Rh1CG169000 Rh1CG169700 Rh1CG170500 Rh1CG171200 Rh1DG182000 Rh1DG182300 Rh1DG184000 Rh1DG184200
rosa_wichuraiana	Rw0G012940 Rw1G007640 Rw1G007670 Rw1G011320 Rw1G015090 Rw1G015110 Rw1G015130 Rw1G015150 Rw1G015290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	200, 655, 759
AclWI	GGATC	3 cut(s)	436, 688, 913
AcoI	YGGCCR	1 cut(s)	46
AcsI	RAATTY	1 cut(s)	188
AdeI	CACNNNGTG	1 cut(s)	18
AfaI	GTAC	3 cut(s)	52, 104, 485
AfiI	CCNNNNNNNGG	6 cut(s)	199, 213, 234, 241, 346, 486
AgsI	TTSAA	1 cut(s)	161
AjnI	CCWGG	2 cut(s)	339, 474
AluBI	AGCT	6 cut(s)	152, 268, 310, 493, 809, 890
AluI	AGCT	6 cut(s)	152, 268, 310, 493, 809, 890
Alw26I	GTCTC	4 cut(s)	255, 371, 654, 758
AlwI	GGATC	3 cut(s)	436, 688, 913
AlwNI	CAGNNNCTG	1 cut(s)	916
AoxI	GGCC	3 cut(s)	5, 46, 477
ApeKI	GCWGC	2 cut(s)	70, 203
ApoI	RAATTY	1 cut(s)	188
AspS9I	GGNCC	1 cut(s)	529
AsuHPI	GGTGA	2 cut(s)	487, 799
AvaII	GGWCC	1 cut(s)	529
BbvI	GCAGC	2 cut(s)	82, 215
BccI	CCATC	2 cut(s)	316, 323
BceAI	ACGGC	1 cut(s)	33
BciT130I	CCWGG	2 cut(s)	341, 476
BcoDI	GTCTC	4 cut(s)	255, 371, 654, 758
BisI	GCNGC	3 cut(s)	71, 201, 204
BlsI	GCNGC	3 cut(s)	72, 202, 205
BmcAI	AGTACT	1 cut(s)	485
Bme1390I	CCNGG	2 cut(s)	341, 476
Bme18I	GGWCC	1 cut(s)	529
BmgT120I	GGNCC	1 cut(s)	529
BmrFI	CCNGG	2 cut(s)	341, 476
BmsI	GCATC	2 cut(s)	99, 310
BplI	GAGNNNNNCTC	2 cut(s)	390, 422
BpmI	CTGGAG	1 cut(s)	666
BpuEI	CTTGAG	2 cut(s)	164, 728
BsaJI	CCNNGG	1 cut(s)	779
BsaWI	WCCGGW	2 cut(s)	220, 234
BsaXI	ACNNNNNCTCC	2 cut(s)	649, 679
Bsc4I	CCNNNNNNNGG	6 cut(s)	199, 213, 234, 241, 346, 486
Bse118I	RCCGGY	1 cut(s)	206
Bse1I	ACTGG	3 cut(s)	218, 491, 776
Bse3DI	GCAATG	2 cut(s)	119, 426
BseBI	CCWGG	2 cut(s)	341, 476
BseDI	CCNNGG	1 cut(s)	779
BseGI	GGATG	2 cut(s)	301, 327
BseLI	CCNNNNNNNGG	6 cut(s)	199, 213, 234, 241, 346, 486
BseMI	GCAATG	2 cut(s)	119, 426
BseMII	CTCAG	2 cut(s)	386, 507
BseNI	ACTGG	3 cut(s)	218, 491, 776
BseRI	GAGGAG	1 cut(s)	278
BseXI	GCAGC	2 cut(s)	82, 215
BseYI	CCCAGC	1 cut(s)	809
BsgI	GTGCAG	2 cut(s)	585, 661
BshFI	GGCC	3 cut(s)	7, 48, 479
BsiSI	CCGG	4 cut(s)	207, 221, 235, 242
BslI	CCNNNNNNNGG	6 cut(s)	199, 213, 234, 241, 346, 486
BsmAI	GTCTC	4 cut(s)	255, 371, 654, 758
BsnI	GGCC	3 cut(s)	7, 48, 479
Bsp143I	GATC	3 cut(s)	441, 693, 918
BspACI	CCGC	3 cut(s)	200, 655, 759
BspANI	GGCC	3 cut(s)	7, 48, 479
BspCNI	CTCAG	2 cut(s)	387, 508
BspPI	GGATC	3 cut(s)	436, 688, 913
BsrDI	GCAATG	2 cut(s)	119, 426
BsrFI	RCCGGY	1 cut(s)	206
BsrI	ACTGG	3 cut(s)	218, 491, 776
BssAI	RCCGGY	1 cut(s)	206
BssECI	CCNNGG	1 cut(s)	779
BssMI	GATC	3 cut(s)	441, 693, 918
BssT1I	CCWWGG	1 cut(s)	779
Bst2UI	CCWGG	2 cut(s)	341, 476
Bst4CI	ACNGT	4 cut(s)	18, 365, 594, 665
Bst6I	CTCTTC	1 cut(s)	900
BstC8I	GCNNGC	3 cut(s)	299, 822, 888
BstDEI	CTNAG	2 cut(s)	395, 516
BstF5I	GGATG	2 cut(s)	301, 327
BstKTI	GATC	3 cut(s)	444, 696, 921
BstMAI	GTCTC	4 cut(s)	255, 371, 654, 758
BstMBI	GATC	3 cut(s)	441, 693, 918
BstMWI	GCNNNNNNNGC	1 cut(s)	307
BstNI	CCWGG	2 cut(s)	341, 476
BstNSI	RCATGY	1 cut(s)	824
BstSCI	CCNGG	2 cut(s)	339, 474
BstV1I	GCAGC	2 cut(s)	82, 215
BstX2I	RGATCY	1 cut(s)	693
BstXI	CCANNNNNNTGG	1 cut(s)	851
BstYI	RGATCY	1 cut(s)	693
BsuRI	GGCC	3 cut(s)	7, 48, 479
BtsCI	GGATG	2 cut(s)	301, 327
BtsI	GCAGTG	1 cut(s)	673
BtsIMutI	CAGTG	4 cut(s)	14, 211, 370, 673
Cac8I	GCNNGC	3 cut(s)	299, 822, 888
CaiI	CAGNNNCTG	1 cut(s)	916
Cfr10I	RCCGGY	1 cut(s)	206
Cfr13I	GGNCC	1 cut(s)	529
CseI	GACGC	1 cut(s)	134
Csp6I	GTAC	3 cut(s)	51, 103, 484
CviAII	CATG	5 cut(s)	688, 821, 845, 862, 902
CviQI	GTAC	3 cut(s)	51, 103, 484
DdeI	CTNAG	2 cut(s)	395, 516
DpnI	GATC	3 cut(s)	443, 695, 920
DpnII	GATC	3 cut(s)	441, 693, 918
DraIII	CACNNNGTG	1 cut(s)	18
EaeI	YGGCCR	1 cut(s)	46
Eam1104I	CTCTTC	1 cut(s)	900
EarI	CTCTTC	1 cut(s)	900
Eco130I	CCWWGG	1 cut(s)	779
Eco47I	GGWCC	1 cut(s)	529
EcoRII	CCWGG	2 cut(s)	339, 474
EcoT14I	CCWWGG	1 cut(s)	779
EcoT22I	ATGCAT	1 cut(s)	826
ErhI	CCWWGG	1 cut(s)	779
FaeI	CATG	5 cut(s)	691, 824, 848, 865, 905
FalI	AAGNNNNNCTT	4 cut(s)	141, 173, 879, 911
FatI	CATG	5 cut(s)	687, 820, 844, 861, 901
Fnu4HI	GCNGC	3 cut(s)	71, 201, 204
FokI	GGATG	2 cut(s)	288, 334
Fsp4HI	GCNGC	3 cut(s)	71, 201, 204
GluI	GCNGC	3 cut(s)	71, 201, 204
GsaI	CCCAGC	1 cut(s)	813
GsuI	CTGGAG	1 cut(s)	666
HaeIII	GGCC	3 cut(s)	7, 48, 479
HapII	CCGG	4 cut(s)	207, 221, 235, 242
HgaI	GACGC	1 cut(s)	134
Hin1II	CATG	5 cut(s)	691, 824, 848, 865, 905
HincII	GTYRAC	1 cut(s)	597
HindII	GTYRAC	1 cut(s)	597
HinfI	GANTC	4 cut(s)	217, 238, 512, 520
HpaII	CCGG	4 cut(s)	207, 221, 235, 242
HphI	GGTGA	2 cut(s)	487, 799
Hpy166II	GTNNAC	1 cut(s)	597
Hpy188I	TCNGA	4 cut(s)	396, 517, 868, 918
Hpy188III	TCNNGA	3 cut(s)	445, 697, 707
Hpy8I	GTNNAC	1 cut(s)	597
HpyAV	CCTTC	5 cut(s)	637, 694, 706, 741, 824
HpyCH4III	ACNGT	4 cut(s)	18, 365, 594, 665
HpyCH4V	TGCA	5 cut(s)	112, 602, 678, 820, 824
HpyF10VI	GCNNNNNNNGC	1 cut(s)	307
HpyF3I	CTNAG	2 cut(s)	395, 516
Hsp92II	CATG	5 cut(s)	691, 824, 848, 865, 905
Kzo9I	GATC	3 cut(s)	441, 693, 918
LmnI	GCTCC	1 cut(s)	265
Lsp1109I	GCAGC	2 cut(s)	82, 215
LweI	GCATC	2 cut(s)	99, 310
MaeIII	GTNAC	4 cut(s)	10, 209, 548, 665
MalI	GATC	3 cut(s)	443, 695, 920
MboI	GATC	3 cut(s)	441, 693, 918
MboII	GAAGA	3 cut(s)	383, 703, 887
MflI	RGATCY	1 cut(s)	693
MluCI	AATT	5 cut(s)	89, 188, 315, 635, 739
MlyI	GAGTC	1 cut(s)	529
MmeI	TCCRAC	1 cut(s)	815
MnlI	CCTC	8 cut(s)	60, 160, 256, 392, 441, 542, 777, 924
Mph1103I	ATGCAT	1 cut(s)	826
MseI	TTAA	3 cut(s)	506, 578, 937
MslI	CAYNNNNRTG	1 cut(s)	849
MspA1I	CMGCKG	1 cut(s)	310
MspI	CCGG	4 cut(s)	207, 221, 235, 242
MspR9I	CCNGG	2 cut(s)	341, 476
MvaI	CCWGG	2 cut(s)	341, 476
MwoI	GCNNNNNNNGC	1 cut(s)	307
NdeII	GATC	3 cut(s)	441, 693, 918
NlaIII	CATG	5 cut(s)	691, 824, 848, 865, 905
NmeAIII	GCCGAG	1 cut(s)	505
NmuCI	GTSAC	3 cut(s)	10, 209, 548
NsiI	ATGCAT	1 cut(s)	826
NspI	RCATGY	1 cut(s)	824
PaeI	GCATGC	1 cut(s)	824
PfeI	GAWTC	3 cut(s)	217, 238, 512
PkrI	GCNGC	3 cut(s)	72, 202, 205
PleI	GAGTC	1 cut(s)	528
PpsI	GAGTC	1 cut(s)	528
Psp6I	CCWGG	2 cut(s)	339, 474
PspFI	CCCAGC	1 cut(s)	809
PspGI	CCWGG	2 cut(s)	339, 474
PspPI	GGNCC	1 cut(s)	529
PstNI	CAGNNNCTG	1 cut(s)	916
PsuI	RGATCY	1 cut(s)	693
PvuII	CAGCTG	1 cut(s)	310
RsaI	GTAC	3 cut(s)	52, 104, 485
RsaNI	GTAC	3 cut(s)	51, 103, 484
RseI	CAYNNNNRTG	1 cut(s)	849
SaqAI	TTAA	3 cut(s)	506, 578, 937
SatI	GCNGC	3 cut(s)	71, 201, 204
Sau3AI	GATC	3 cut(s)	441, 693, 918
Sau96I	GGNCC	1 cut(s)	529
ScaI	AGTACT	1 cut(s)	485
SchI	GAGTC	1 cut(s)	529
ScrFI	CCNGG	2 cut(s)	341, 476
SetI	ASST	9 cut(s)	154, 270, 312, 417, 462, 495, 811, 835, 892
SfaNI	GCATC	2 cut(s)	99, 310
SinI	GGWCC	1 cut(s)	529
SmiMI	CAYNNNNRTG	1 cut(s)	849
SmlI	CTYRAG	2 cut(s)	143, 707
SmoI	CTYRAG	2 cut(s)	143, 707
SphI	GCATGC	1 cut(s)	824
Sse9I	AATT	5 cut(s)	89, 188, 315, 635, 739
SsiI	CCGC	3 cut(s)	200, 655, 759
SspI	AATATT	2 cut(s)	618, 722
StyD4I	CCNGG	2 cut(s)	339, 474
StyI	CCWWGG	1 cut(s)	779
TaaI	ACNGT	4 cut(s)	18, 365, 594, 665
TaqI	TCGA	2 cut(s)	534, 898
TasI	AATT	5 cut(s)	89, 188, 315, 635, 739
TatI	WGTACW	1 cut(s)	483
TauI	GCSGC	1 cut(s)	203
TfiI	GAWTC	3 cut(s)	217, 238, 512
Tru1I	TTAA	3 cut(s)	506, 578, 937
Tru9I	TTAA	3 cut(s)	506, 578, 937
TscAI	CASTG	4 cut(s)	21, 218, 370, 680
TseFI	GTSAC	3 cut(s)	10, 209, 548
TseI	GCWGC	2 cut(s)	70, 203
Tsp45I	GTSAC	3 cut(s)	10, 209, 548
TspDTI	ATGAA	1 cut(s)	704
TspGWI	ACGGA	1 cut(s)	588
TspRI	CASTG	4 cut(s)	21, 218, 370, 680
VpaK11BI	GGWCC	1 cut(s)	529
XapI	RAATTY	1 cut(s)	188
XceI	RCATGY	1 cut(s)	824
ZrmI	AGTACT	1 cut(s)	485
Zsp2I	ATGCAT	1 cut(s)	826

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.