Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000335.1

Orthogroup ID

OG0000300

Physical Location & Seq

Genomic Coordinates Reverse (-)

303008 .. 304640

Gene Structure 1633 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000335.1_g000058.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

atggtggtggtacgcagcggtttgtggtgtgctttgggattcaggattcaggatttaggattcaaaggatgcaggcaagttcaaaggattgaacctgctttgataccaagtagaaaagaatactttgattttaggggtgaggagctgaatagatatggtggtctatatacttggagatatcctcagctgaaagtaaaggtagtggatggaagtagcttagctgtggctgtaatcctcaacagcataccaaaagagacaacccaagttgttcttacaggcaaccttacaaaggttgcttatgaaattgcatttgctttgagccagaggggcattgaggtagctacattacacaaggatgagtatttgaagctcaccaaatcattaagtgctactaagagtgcggtggttcttgcaaaaggctctggttcaaagatttggttagtgggagatggattgagtaaagaacaactaaatgcaccaaaaggaacaatgtttgttcccttctcccaattccccctaaaaaagttgcgcagggactgcttctaccactgcactccagcaatgaagatcccccggtctcttgagaatgtttactcgtgtgagaactggttgccaagaagggtgatgagcgcatggcgcatagctggaatagtgcatgccttggaaggttggaatgaacatgagtgtggttacgccatgtccgacatcgacaaggtttgggaagctacgcttcgacatggctttcaacctctgatccccaatgctactccgaacaaatattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0008150 GO:0008152 GO:0012505 GO:0016020 GO:0016491 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071704 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko00073 ko01110 map00073 map01110

Pfam Domains

Protein Families

FA_hydroxylase Wax2_C

Protein Analysis

260

Amino Acids

29.36

Weight (kDa)

9.46

Isoelectric Point (pI)

40.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000300)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02190 AT1G02190 AT1G02205 AT1G02205 AT1G02205 AT1G02205 AT1G02205 AT2G37700 AT2G37700 AT2G37700 AT2G37700
fragaria_vesca	FvH4_1g22160 FvH4_7g08560 FvH4_7g08560 FvH4_7g08560 FvH4_7g08570 FvH4_7g08570 FvH4_7g08590 FvH4_7g08590
malus_domestica	MD02G1226900.v1.1 MD07G1083700.v1.1 MD07G1083800.v1.1 MD07G1086200.v1.1 MD07G1086300.v1.1 MD07G1086700.v1.1 MD13G1075600.v1.1
prunus_persica	Prupe.2G112600_v2.0.a1 Prupe.2G112800_v2.0.a1 Prupe.2G113000_v2.0.a1 Prupe.2G113500_v2.0.a1 Prupe.2G113600_v2.0.a1
pyrus_communis	pycom02g19600 pycom02g19610 pycom07g06920 pycom07g06930
rosa_chinensis	RchiOBHm_Chr1g0343261 RchiOBHm_Chr1g0343301 RchiOBHm_Chr1g0343371 RchiOBHm_Chr1g0343431 RchiOBHm_Chr1g0343441 RchiOBHm_Chr1g0343521 RchiOBHm_Chr1g0343691 RchiOBHm_Chr1g0343791
rosa_laevigata	RLG00000028951 RLG00000028953 RLG00000028965 RLG00000028968 RLG00000028969 RLG00000028971 RLG00000028972 RLG00000028974 RLG00000029891
rosa_multiflora	Rmu_sc0000021.1_g000002 Rmu_sc0000335.1_g000046 Rmu_sc0000335.1_g000047 Rmu_sc0000335.1_g000058 Rmu_sc0000335.1_g000061 Rmu_sc0000335.1_g000106 Rmu_sc0000335.1_g000125 Rmu_sc0000544.1_g000010 Rmu_sc0003430.1_g000012 Rmu_sc0005796.1_g000004 Rmu_sc0028268.1_g000001 Rmu_ssc0000259.1_g000038
rosa_roxburghii	Rroxscaffold_2G00110090 Rroxscaffold_4G00310350 Rroxscaffold_4G00310610 Rroxscaffold_4G00310710 Rroxscaffold_4G00310740 Rroxscaffold_4G00310760 Rroxscaffold_4G00321110
rosa_rugosa	Rorug01G0080100 Rorug01G0080200 Rorug01G0166400 Rorug01G0166500 Rorug01G0166500 Rorug01G0166600 Rorug01G0166700 Rorug01G0166800 Rorug01G0168400 Rorug01G0168500 Rorug01G0168800 Rorug03G0241300 Rorug03G0241400 Rorug04G0001200 Rorug06G0031500 Rorug06G0073200 Rorug06G0264000
rosa_samantha	Rh1AG098100 Rh1AG181800 Rh1AG182100 Rh1AG182400 Rh1AG183000 Rh1AG183600 Rh1AG184300 Rh1AG185400 Rh1BG104000 Rh1BG150000 Rh1BG150400 Rh1BG152100 Rh1BG152300 Rh1CG168600 Rh1CG168900 Rh1CG169000 Rh1CG169700 Rh1CG170500 Rh1CG171200 Rh1DG182000 Rh1DG182300 Rh1DG184000 Rh1DG184200
rosa_wichuraiana	Rw0G012940 Rw1G007640 Rw1G007670 Rw1G011320 Rw1G015090 Rw1G015110 Rw1G015130 Rw1G015150 Rw1G015290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	530
Acc36I	ACCTGC	1 cut(s)	103
AciI	CCGC	2 cut(s)	18, 401
AclWI	GGATC	2 cut(s)	562, 748
AfaI	GTAC	1 cut(s)	12
AfiI	CCNNNNNNNGG	1 cut(s)	289
AgsI	TTSAA	6 cut(s)	64, 83, 92, 367, 429, 746
AluBI	AGCT	8 cut(s)	145, 187, 216, 221, 341, 370, 644, 725
AluI	AGCT	8 cut(s)	145, 187, 216, 221, 341, 370, 644, 725
Alw26I	GTCTC	2 cut(s)	248, 582
AlwI	GGATC	2 cut(s)	562, 748
AlwNI	CAGNNNCTG	1 cut(s)	537
ApeKI	GCWGC	1 cut(s)	15
AspLEI	GCGC	3 cut(s)	531, 632, 639
AsuC2I	CCSGG	1 cut(s)	574
AsuHPI	GGTGA	3 cut(s)	149, 364, 634
BauI	CACGAG	1 cut(s)	595
BbvCI	CCTCAGC	1 cut(s)	183
BbvI	GCAGC	1 cut(s)	27
BccI	CCATC	2 cut(s)	200, 443
BcnI	CCSGG	1 cut(s)	574
BcoDI	GTCTC	2 cut(s)	248, 582
BfuAI	ACCTGC	1 cut(s)	103
BglI	GCCNNNNNGGC	1 cut(s)	327
BisI	GCNGC	1 cut(s)	16
BlpI	GCTNAGC	1 cut(s)	217
BlsI	GCNGC	1 cut(s)	17
Bme1390I	CCNGG	1 cut(s)	574
BmrFI	CCNGG	1 cut(s)	574
BmsI	GCATC	1 cut(s)	59
BplI	GAGNNNNNCTC	2 cut(s)	166, 198
BpmI	CTGGAG	1 cut(s)	540
Bpu10I	CCTNAGC	1 cut(s)	183
Bpu1102I	GCTNAGC	1 cut(s)	217
BpuEI	CTTGAG	1 cut(s)	602
BpuMI	CCSGG	1 cut(s)	574
BsaI	GGTCTC	1 cut(s)	582
BsaJI	CCNNGG	2 cut(s)	572, 660
Bsc4I	CCNNNNNNNGG	1 cut(s)	289
Bse1I	ACTGG	1 cut(s)	611
Bse3DI	GCAATG	1 cut(s)	567
BseDI	CCNNGG	2 cut(s)	572, 660
BseGI	GGATG	3 cut(s)	74, 211, 361
BseLI	CCNNNNNNNGG	1 cut(s)	289
BseMI	GCAATG	1 cut(s)	567
BseMII	CTCAG	1 cut(s)	197
BseNI	ACTGG	1 cut(s)	611
BseRI	GAGGAG	1 cut(s)	155
BseXI	GCAGC	1 cut(s)	27
BsgI	GTGCAG	1 cut(s)	535
BsiSI	CCGG	1 cut(s)	574
BslFI	GGGAC	1 cut(s)	548
BslI	CCNNNNNNNGG	1 cut(s)	289
BsmAI	GTCTC	2 cut(s)	248, 582
BsmFI	GGGAC	1 cut(s)	548
Bso31I	GGTCTC	1 cut(s)	582
Bsp143I	GATC	2 cut(s)	567, 753
Bsp1720I	GCTNAGC	1 cut(s)	217
BspACI	CCGC	2 cut(s)	18, 401
BspCNI	CTCAG	1 cut(s)	196
BspMI	ACCTGC	1 cut(s)	103
BspPI	GGATC	2 cut(s)	562, 748
BspTNI	GGTCTC	1 cut(s)	582
BsrDI	GCAATG	1 cut(s)	567
BsrI	ACTGG	1 cut(s)	611
BssECI	CCNNGG	2 cut(s)	572, 660
BssMI	GATC	2 cut(s)	567, 753
BssSI	CACGAG	1 cut(s)	595
BssT1I	CCWWGG	1 cut(s)	660
Bst2BI	CACGAG	1 cut(s)	595
BstAPI	GCANNNNNTGC	1 cut(s)	537
BstC8I	GCNNGC	2 cut(s)	74, 657
BstDEI	CTNAG	3 cut(s)	183, 217, 393
BstENI	CCTNNNNNAGG	1 cut(s)	287
BstF5I	GGATG	3 cut(s)	74, 211, 361
BstHHI	GCGC	3 cut(s)	531, 632, 639
BstKTI	GATC	2 cut(s)	570, 756
BstMAI	GTCTC	2 cut(s)	248, 582
BstMBI	GATC	2 cut(s)	567, 753
BstMWI	GCNNNNNNNGC	3 cut(s)	327, 537, 636
BstNSI	RCATGY	1 cut(s)	659
BstSCI	CCNGG	1 cut(s)	572
BstV1I	GCAGC	1 cut(s)	27
BstX2I	RGATCY	1 cut(s)	567
BstYI	RGATCY	1 cut(s)	567
BtsCI	GGATG	3 cut(s)	74, 211, 361
BtsI	GCAGTG	1 cut(s)	547
BtsIMutI	CAGTG	1 cut(s)	547
BveI	ACCTGC	1 cut(s)	103
Cac8I	GCNNGC	2 cut(s)	74, 657
CaiI	CAGNNNCTG	1 cut(s)	537
CfoI	GCGC	3 cut(s)	531, 632, 639
Csp6I	GTAC	1 cut(s)	11
CviAII	CATG	5 cut(s)	633, 656, 680, 697, 737
CviQI	GTAC	1 cut(s)	11
DdeI	CTNAG	3 cut(s)	183, 217, 393
DpnI	GATC	2 cut(s)	569, 755
DpnII	GATC	2 cut(s)	567, 753
Eco130I	CCWWGG	1 cut(s)	660
Eco31I	GGTCTC	1 cut(s)	582
Eco32I	GATATC	1 cut(s)	179
EcoNI	CCTNNNNNAGG	1 cut(s)	287
EcoRV	GATATC	1 cut(s)	179
EcoT14I	CCWWGG	1 cut(s)	660
ErhI	CCWWGG	1 cut(s)	660
FaeI	CATG	5 cut(s)	636, 659, 683, 700, 740
FalI	AAGNNNNNCTT	4 cut(s)	255, 287, 714, 746
FaqI	GGGAC	1 cut(s)	548
FatI	CATG	5 cut(s)	632, 655, 679, 696, 736
Fnu4HI	GCNGC	1 cut(s)	16
FokI	GGATG	3 cut(s)	81, 218, 368
Fsp4HI	GCNGC	1 cut(s)	16
FspI	TGCGCA	1 cut(s)	530
GlaI	GCGC	3 cut(s)	530, 631, 638
GluI	GCNGC	1 cut(s)	16
GsuI	CTGGAG	1 cut(s)	540
HapII	CCGG	1 cut(s)	574
HhaI	GCGC	3 cut(s)	531, 632, 639
Hin1II	CATG	5 cut(s)	636, 659, 683, 700, 740
Hin6I	GCGC	3 cut(s)	529, 630, 637
HinP1I	GCGC	3 cut(s)	529, 630, 637
HinfI	GANTC	3 cut(s)	39, 46, 60
HpaII	CCGG	1 cut(s)	574
HphI	GGTGA	3 cut(s)	149, 364, 634
Hpy166II	GTNNAC	1 cut(s)	592
Hpy188I	TCNGA	3 cut(s)	703, 753, 771
Hpy188III	TCNNGA	3 cut(s)	43, 50, 581
Hpy8I	GTNNAC	1 cut(s)	592
HpyAV	CCTTC	3 cut(s)	511, 612, 659
HpyCH4V	TGCA	6 cut(s)	72, 308, 413, 476, 552, 655
HpyF10VI	GCNNNNNNNGC	3 cut(s)	327, 537, 636
HpyF3I	CTNAG	3 cut(s)	183, 217, 393
Hsp92II	CATG	5 cut(s)	636, 659, 683, 700, 740
HspAI	GCGC	3 cut(s)	529, 630, 637
Kzo9I	GATC	2 cut(s)	567, 753
LmnI	GCTCC	1 cut(s)	142
Lsp1109I	GCAGC	1 cut(s)	27
LweI	GCATC	1 cut(s)	59
MaeIII	GTNAC	1 cut(s)	689
MalI	GATC	2 cut(s)	569, 755
MboI	GATC	2 cut(s)	567, 753
MboII	GAAGA	1 cut(s)	577
MflI	RGATCY	1 cut(s)	567
MluCI	AATT	2 cut(s)	303, 509
MmeI	TCCRAC	2 cut(s)	650, 726
MnlI	CCTC	6 cut(s)	133, 192, 245, 318, 328, 759
MseI	TTAA	2 cut(s)	383, 781
MslI	CAYNNNNRTG	2 cut(s)	354, 684
MspA1I	CMGCKG	2 cut(s)	18, 187
MspI	CCGG	1 cut(s)	574
MspR9I	CCNGG	1 cut(s)	574
MwoI	GCNNNNNNNGC	3 cut(s)	327, 537, 636
NciI	CCSGG	1 cut(s)	574
NdeII	GATC	2 cut(s)	567, 753
NlaIII	CATG	5 cut(s)	636, 659, 683, 700, 740
NsbI	TGCGCA	1 cut(s)	530
NspI	RCATGY	1 cut(s)	659
PaeI	GCATGC	1 cut(s)	659
PcsI	WCGNNNNNNNCGW	1 cut(s)	699
PfeI	GAWTC	3 cut(s)	39, 46, 60
PkrI	GCNGC	1 cut(s)	17
PstNI	CAGNNNCTG	1 cut(s)	537
PsuI	RGATCY	1 cut(s)	567
PvuII	CAGCTG	1 cut(s)	187
RsaI	GTAC	1 cut(s)	12
RsaNI	GTAC	1 cut(s)	11
RseI	CAYNNNNRTG	2 cut(s)	354, 684
SaqAI	TTAA	2 cut(s)	383, 781
SatI	GCNGC	1 cut(s)	16
Sau3AI	GATC	2 cut(s)	567, 753
ScrFI	CCNGG	1 cut(s)	574
SfaNI	GCATC	1 cut(s)	59
SmiMI	CAYNNNNRTG	2 cut(s)	354, 684
SmlI	CTYRAG	1 cut(s)	581
SmoI	CTYRAG	1 cut(s)	581
SphI	GCATGC	1 cut(s)	659
Sse9I	AATT	2 cut(s)	303, 509
SsiI	CCGC	2 cut(s)	18, 401
SspI	AATATT	1 cut(s)	779
StyD4I	CCNGG	1 cut(s)	572
StyI	CCWWGG	1 cut(s)	660
TaqI	TCGA	2 cut(s)	708, 733
TasI	AATT	2 cut(s)	303, 509
TfiI	GAWTC	3 cut(s)	39, 46, 60
Tru1I	TTAA	2 cut(s)	383, 781
Tru9I	TTAA	2 cut(s)	383, 781
TscAI	CASTG	1 cut(s)	554
TseI	GCWGC	1 cut(s)	15
TspDTI	ATGAA	3 cut(s)	315, 578, 690
TspRI	CASTG	1 cut(s)	554
XagI	CCTNNNNNAGG	1 cut(s)	287
XceI	RCATGY	1 cut(s)	659

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.