Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000300

Physical Location & Seq

Genomic Coordinates Reverse (-)

32861021 .. 32861637

Gene Structure 617 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00310740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGTGGGGTGAGGGGCTCAATAGTTATGGTGGTATATATGTTCAGAGGAATCCACGGCTGCAAATCAAGGTCGTGGATGGGAGTAGCTTAGCTGTGGCTGTCATCCTTAACAACATTCCGAAAGAGACAACCCAGGTTCTCCTTGCAGGCAACCTCACAAAGGTTGCTTATGCCCTTGCCTTTTCTTTGGGCCAGAGGGATATCCAGGTAGTTACATTACAGCAGGCTGAGTATTTGAAGCTCACCAAATCACTAAATGCTACAGAGGGTAAGGTGATTCATGACAGAATCTATGGTCAAAAGGTAAGGAAAATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0008150 GO:0008152 GO:0012505 GO:0016020 GO:0016491 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071704 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko00073 ko01110 map00073 map01110

Pfam Domains

Protein Families

FA_hydroxylase Wax2_C

Protein Analysis

105

Amino Acids

11.6

Weight (kDa)

9.79

Isoelectric Point (pI)

14.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CER1-like_C	PF12076	46 - 92	1e-07	CER1-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000300)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02190 AT1G02190 AT1G02205 AT1G02205 AT1G02205 AT1G02205 AT1G02205 AT2G37700 AT2G37700 AT2G37700 AT2G37700
fragaria_vesca	FvH4_1g22160 FvH4_7g08560 FvH4_7g08560 FvH4_7g08560 FvH4_7g08570 FvH4_7g08570 FvH4_7g08590 FvH4_7g08590
malus_domestica	MD02G1226900.v1.1 MD07G1083700.v1.1 MD07G1083800.v1.1 MD07G1086200.v1.1 MD07G1086300.v1.1 MD07G1086700.v1.1 MD13G1075600.v1.1
prunus_persica	Prupe.2G112600_v2.0.a1 Prupe.2G112800_v2.0.a1 Prupe.2G113000_v2.0.a1 Prupe.2G113500_v2.0.a1 Prupe.2G113600_v2.0.a1
pyrus_communis	pycom02g19600 pycom02g19610 pycom07g06920 pycom07g06930
rosa_chinensis	RchiOBHm_Chr1g0343261 RchiOBHm_Chr1g0343301 RchiOBHm_Chr1g0343371 RchiOBHm_Chr1g0343431 RchiOBHm_Chr1g0343441 RchiOBHm_Chr1g0343521 RchiOBHm_Chr1g0343691 RchiOBHm_Chr1g0343791
rosa_laevigata	RLG00000028951 RLG00000028953 RLG00000028965 RLG00000028968 RLG00000028969 RLG00000028971 RLG00000028972 RLG00000028974 RLG00000029891
rosa_multiflora	Rmu_sc0000021.1_g000002 Rmu_sc0000335.1_g000046 Rmu_sc0000335.1_g000047 Rmu_sc0000335.1_g000058 Rmu_sc0000335.1_g000061 Rmu_sc0000335.1_g000106 Rmu_sc0000335.1_g000125 Rmu_sc0000544.1_g000010 Rmu_sc0003430.1_g000012 Rmu_sc0005796.1_g000004 Rmu_sc0028268.1_g000001 Rmu_ssc0000259.1_g000038
rosa_roxburghii	Rroxscaffold_2G00110090 Rroxscaffold_4G00310350 Rroxscaffold_4G00310610 Rroxscaffold_4G00310710 Rroxscaffold_4G00310740 Rroxscaffold_4G00310760 Rroxscaffold_4G00321110
rosa_rugosa	Rorug01G0080100 Rorug01G0080200 Rorug01G0166400 Rorug01G0166500 Rorug01G0166500 Rorug01G0166600 Rorug01G0166700 Rorug01G0166800 Rorug01G0168400 Rorug01G0168500 Rorug01G0168800 Rorug03G0241300 Rorug03G0241400 Rorug04G0001200 Rorug06G0031500 Rorug06G0073200 Rorug06G0264000
rosa_samantha	Rh1AG098100 Rh1AG181800 Rh1AG182100 Rh1AG182400 Rh1AG183000 Rh1AG183600 Rh1AG184300 Rh1AG185400 Rh1BG104000 Rh1BG150000 Rh1BG150400 Rh1BG152100 Rh1BG152300 Rh1CG168600 Rh1CG168900 Rh1CG169000 Rh1CG169700 Rh1CG170500 Rh1CG171200 Rh1DG182000 Rh1DG182300 Rh1DG184000 Rh1DG184200
rosa_wichuraiana	Rw0G012940 Rw1G007640 Rw1G007670 Rw1G011320 Rw1G015090 Rw1G015110 Rw1G015130 Rw1G015150 Rw1G015290

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	312
AfiI	CCNNNNNNNGG	1 cut(s)	160
AgsI	TTSAA	1 cut(s)	238
AjnI	CCWGG	2 cut(s)	132, 204
AluBI	AGCT	3 cut(s)	87, 92, 241
AluI	AGCT	3 cut(s)	87, 92, 241
Alw26I	GTCTC	1 cut(s)	119
AoxI	GGCC	1 cut(s)	190
ApeKI	GCWGC	1 cut(s)	58
ApoI	RAATTY	1 cut(s)	312
AspS9I	GGNCC	1 cut(s)	190
AsuHPI	GGTGA	3 cut(s)	20, 235, 286
BanII	GRGCYC	1 cut(s)	18
BbvI	GCAGC	1 cut(s)	45
BccI	CCATC	1 cut(s)	71
BceAI	ACGGC	1 cut(s)	71
BciT130I	CCWGG	2 cut(s)	134, 206
BcoDI	GTCTC	1 cut(s)	119
BfmI	CTRYAG	1 cut(s)	261
BisI	GCNGC	1 cut(s)	59
BlpI	GCTNAGC	1 cut(s)	88
BlsI	GCNGC	1 cut(s)	60
Bme1390I	CCNGG	2 cut(s)	134, 206
BmgT120I	GGNCC	1 cut(s)	190
BmrFI	CCNGG	2 cut(s)	134, 206
Bpu1102I	GCTNAGC	1 cut(s)	88
BsaJI	CCNNGG	2 cut(s)	53, 132
Bsc4I	CCNNNNNNNGG	1 cut(s)	160
BseBI	CCWGG	2 cut(s)	134, 206
BseDI	CCNNGG	2 cut(s)	53, 132
BseGI	GGATG	2 cut(s)	82, 102
BseLI	CCNNNNNNNGG	1 cut(s)	160
BseMII	CTCAG	1 cut(s)	219
BseXI	GCAGC	1 cut(s)	45
BshFI	GGCC	1 cut(s)	192
BslI	CCNNNNNNNGG	1 cut(s)	160
BsmAI	GTCTC	1 cut(s)	119
BsnI	GGCC	1 cut(s)	192
Bsp1286I	GDGCHC	1 cut(s)	18
Bsp1720I	GCTNAGC	1 cut(s)	88
BspANI	GGCC	1 cut(s)	192
BspCNI	CTCAG	1 cut(s)	220
BspHI	TCATGA	1 cut(s)	280
BssECI	CCNNGG	2 cut(s)	53, 132
Bst2UI	CCWGG	2 cut(s)	134, 206
BstC8I	GCNNGC	2 cut(s)	148, 225
BstDEI	CTNAG	2 cut(s)	88, 228
BstDSI	CCRYGG	1 cut(s)	53
BstENI	CCTNNNNNAGG	1 cut(s)	158
BstF5I	GGATG	2 cut(s)	82, 102
BstMAI	GTCTC	1 cut(s)	119
BstNI	CCWGG	2 cut(s)	134, 206
BstSCI	CCNGG	2 cut(s)	132, 204
BstSFI	CTRYAG	1 cut(s)	261
BstV1I	GCAGC	1 cut(s)	45
BsuRI	GGCC	1 cut(s)	192
BtgI	CCRYGG	1 cut(s)	53
BtsCI	GGATG	2 cut(s)	82, 102
Cac8I	GCNNGC	2 cut(s)	148, 225
CciI	TCATGA	1 cut(s)	280
Cfr13I	GGNCC	1 cut(s)	190
CviAII	CATG	1 cut(s)	281
CviJI	RGCY	8 cut(s)	16, 58, 87, 92, 98, 192, 227, 241
CviKI_1	RGCY	8 cut(s)	16, 58, 87, 92, 98, 192, 227, 241
DdeI	CTNAG	2 cut(s)	88, 228
Eco24I	GRGCYC	1 cut(s)	18
Eco32I	GATATC	1 cut(s)	202
EcoNI	CCTNNNNNAGG	1 cut(s)	158
EcoRII	CCWGG	2 cut(s)	132, 204
EcoRV	GATATC	1 cut(s)	202
EcoT38I	GRGCYC	1 cut(s)	18
FaeI	CATG	1 cut(s)	284
FaiI	YATR	7 cut(s)	27, 35, 37, 39, 171, 282, 294
FatI	CATG	1 cut(s)	280
Fnu4HI	GCNGC	1 cut(s)	59
FokI	GGATG	2 cut(s)	89, 89
FriOI	GRGCYC	1 cut(s)	18
Fsp4HI	GCNGC	1 cut(s)	59
GluI	GCNGC	1 cut(s)	59
HaeIII	GGCC	1 cut(s)	192
Hin1II	CATG	1 cut(s)	284
HinfI	GANTC	3 cut(s)	49, 277, 288
HphI	GGTGA	3 cut(s)	20, 235, 286
Hpy188I	TCNGA	2 cut(s)	45, 120
Hpy188III	TCNNGA	1 cut(s)	281
HpyCH4V	TGCA	2 cut(s)	61, 146
HpyF3I	CTNAG	2 cut(s)	88, 228
Hsp92II	CATG	1 cut(s)	284
LpnPI	CCDG	7 cut(s)	119, 132, 146, 191, 206, 209, 218
Lsp1109I	GCAGC	1 cut(s)	45
MaeIII	GTNAC	1 cut(s)	211
MhlI	GDGCHC	1 cut(s)	18
MluCI	AATT	1 cut(s)	312
MnlI	CCTC	5 cut(s)	4, 39, 164, 189, 259
MseI	TTAA	1 cut(s)	108
MspR9I	CCNGG	2 cut(s)	134, 206
MvaI	CCWGG	2 cut(s)	134, 206
NlaIII	CATG	1 cut(s)	284
PagI	TCATGA	1 cut(s)	280
PfeI	GAWTC	3 cut(s)	49, 277, 288
PkrI	GCNGC	1 cut(s)	60
Psp6I	CCWGG	2 cut(s)	132, 204
PspGI	CCWGG	2 cut(s)	132, 204
PspPI	GGNCC	1 cut(s)	190
SaqAI	TTAA	1 cut(s)	108
SatI	GCNGC	1 cut(s)	59
Sau96I	GGNCC	1 cut(s)	190
ScrFI	CCNGG	2 cut(s)	134, 206
SduI	GDGCHC	1 cut(s)	18
SfcI	CTRYAG	1 cut(s)	261
Sse9I	AATT	1 cut(s)	312
StyD4I	CCNGG	2 cut(s)	132, 204
TasI	AATT	1 cut(s)	312
TfiI	GAWTC	3 cut(s)	49, 277, 288
Tru1I	TTAA	1 cut(s)	108
Tru9I	TTAA	1 cut(s)	108
TseI	GCWGC	1 cut(s)	58
TspDTI	ATGAA	1 cut(s)	269
XagI	CCTNNNNNAGG	1 cut(s)	158
XapI	RAATTY	1 cut(s)	312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.