Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0000300

Physical Location & Seq

Genomic Coordinates Reverse (-)

22530823 .. 22532679

Gene Structure 1857 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0241400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGACCCTCCTGCTTCTATTCCTACTTCTGCTGCTGCTACTGCTACTGCCTCTGCTAGTGTTCAACATGTGACCAAGAGGTCTTCAGATGAGCTGCTCAGGAAATTTGCTGATTCCTGCAATGAGGCCGAGGCCTCAGCAAAGAAGAAGGCGATCAGGGCGCTTTCGAAGCAAAGGAAAAGAAGCCGGAAAAGCGGTGAGTTTGATCAGAGTGAGAGTCCATCAAATGGCAAGAGTAGCAGCTTAGTGGAGAGGAGGTCACTGCTTCCTGTTGTTGCTGGGACTAAAAACAAGGGATTGCTGCTTAGGCAGCTTGGGGTTCATGGCAGGTCAAGGGATATCAGGAACAAGTCCCTTTTTGGTACCATTCACAAGACTTGGAGGAGGACCATAGAAGGGGCTTCAAAGGTTTTCATGGAGAAGCATTACAATAGGCACAGGCGTTTGATAAATGACATTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0008150 GO:0008152 GO:0012505 GO:0016020 GO:0016491 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071704 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko00073 ko01110 map00073 map01110

Pfam Domains

Protein Families

FA_hydroxylase Wax2_C

Protein Analysis

154

Amino Acids

17.09

Weight (kDa)

10.99

Isoelectric Point (pI)

71.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000300)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02190 AT1G02190 AT1G02205 AT1G02205 AT1G02205 AT1G02205 AT1G02205 AT2G37700 AT2G37700 AT2G37700 AT2G37700
fragaria_vesca	FvH4_1g22160 FvH4_7g08560 FvH4_7g08560 FvH4_7g08560 FvH4_7g08570 FvH4_7g08570 FvH4_7g08590 FvH4_7g08590
malus_domestica	MD02G1226900.v1.1 MD07G1083700.v1.1 MD07G1083800.v1.1 MD07G1086200.v1.1 MD07G1086300.v1.1 MD07G1086700.v1.1 MD13G1075600.v1.1
prunus_persica	Prupe.2G112600_v2.0.a1 Prupe.2G112800_v2.0.a1 Prupe.2G113000_v2.0.a1 Prupe.2G113500_v2.0.a1 Prupe.2G113600_v2.0.a1
pyrus_communis	pycom02g19600 pycom02g19610 pycom07g06920 pycom07g06930
rosa_chinensis	RchiOBHm_Chr1g0343261 RchiOBHm_Chr1g0343301 RchiOBHm_Chr1g0343371 RchiOBHm_Chr1g0343431 RchiOBHm_Chr1g0343441 RchiOBHm_Chr1g0343521 RchiOBHm_Chr1g0343691 RchiOBHm_Chr1g0343791
rosa_laevigata	RLG00000028951 RLG00000028953 RLG00000028965 RLG00000028968 RLG00000028969 RLG00000028971 RLG00000028972 RLG00000028974 RLG00000029891
rosa_multiflora	Rmu_sc0000021.1_g000002 Rmu_sc0000335.1_g000046 Rmu_sc0000335.1_g000047 Rmu_sc0000335.1_g000058 Rmu_sc0000335.1_g000061 Rmu_sc0000335.1_g000106 Rmu_sc0000335.1_g000125 Rmu_sc0000544.1_g000010 Rmu_sc0003430.1_g000012 Rmu_sc0005796.1_g000004 Rmu_sc0028268.1_g000001 Rmu_ssc0000259.1_g000038
rosa_roxburghii	Rroxscaffold_2G00110090 Rroxscaffold_4G00310350 Rroxscaffold_4G00310610 Rroxscaffold_4G00310710 Rroxscaffold_4G00310740 Rroxscaffold_4G00310760 Rroxscaffold_4G00321110
rosa_rugosa	Rorug01G0080100 Rorug01G0080200 Rorug01G0166400 Rorug01G0166500 Rorug01G0166500 Rorug01G0166600 Rorug01G0166700 Rorug01G0166800 Rorug01G0168400 Rorug01G0168500 Rorug01G0168800 Rorug03G0241300 Rorug03G0241400 Rorug04G0001200 Rorug06G0031500 Rorug06G0073200 Rorug06G0264000
rosa_samantha	Rh1AG098100 Rh1AG181800 Rh1AG182100 Rh1AG182400 Rh1AG183000 Rh1AG183600 Rh1AG184300 Rh1AG185400 Rh1BG104000 Rh1BG150000 Rh1BG150400 Rh1BG152100 Rh1BG152300 Rh1CG168600 Rh1CG168900 Rh1CG169000 Rh1CG169700 Rh1CG170500 Rh1CG171200 Rh1DG182000 Rh1DG182300 Rh1DG184000 Rh1DG184200
rosa_wichuraiana	Rw0G012940 Rw1G007640 Rw1G007670 Rw1G011320 Rw1G015090 Rw1G015110 Rw1G015130 Rw1G015150 Rw1G015290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	79
Acc36I	ACCTGC	1 cut(s)	318
Acc65I	GGTACC	1 cut(s)	362
AccB1I	GGYRCC	1 cut(s)	362
AccB7I	CCANNNNNTGG	1 cut(s)	227
AciI	CCGC	1 cut(s)	195
AcsI	RAATTY	1 cut(s)	104
AcuI	CTGAAG	1 cut(s)	69
AfaI	GTAC	1 cut(s)	364
AfiI	CCNNNNNNNGG	2 cut(s)	227, 396
AflIII	ACRYGT	1 cut(s)	67
AgsI	TTSAA	2 cut(s)	65, 405
AluBI	AGCT	3 cut(s)	94, 243, 313
AluI	AGCT	3 cut(s)	94, 243, 313
AoxI	GGCC	2 cut(s)	126, 132
ApeKI	GCWGC	6 cut(s)	32, 35, 94, 240, 301, 310
ApoI	RAATTY	1 cut(s)	104
Asp718I	GGTACC	1 cut(s)	362
AspLEI	GCGC	1 cut(s)	163
AspS9I	GGNCC	2 cut(s)	4, 387
AsuHPI	GGTGA	1 cut(s)	209
AsuII	TTCGAA	1 cut(s)	167
AvaII	GGWCC	2 cut(s)	4, 387
BanI	GGYRCC	1 cut(s)	362
BbsI	GAAGAC	1 cut(s)	75
BbvCI	CCTCAGC	1 cut(s)	136
BbvI	GCAGC	6 cut(s)	19, 22, 81, 252, 288, 322
BccI	CCATC	1 cut(s)	229
BclI	TGATCA	1 cut(s)	205
BfaI	CTAG	1 cut(s)	57
BfoI	RGCGCY	1 cut(s)	164
BfuAI	ACCTGC	1 cut(s)	318
BisI	GCNGC	6 cut(s)	33, 36, 95, 241, 302, 311
BlsI	GCNGC	6 cut(s)	34, 37, 96, 242, 303, 312
Bme18I	GGWCC	2 cut(s)	4, 387
BmgT120I	GGNCC	2 cut(s)	4, 387
BmiI	GGNNCC	2 cut(s)	6, 364
BpiI	GAAGAC	1 cut(s)	75
Bpu10I	CCTNAGC	3 cut(s)	98, 136, 305
Bpu14I	TTCGAA	1 cut(s)	167
BsaJI	CCNNGG	1 cut(s)	129
BsaXI	ACNNNNNCTCC	2 cut(s)	242, 272
Bsc4I	CCNNNNNNNGG	2 cut(s)	227, 396
Bse3DI	GCAATG	1 cut(s)	127
BseDI	CCNNGG	1 cut(s)	129
BseLI	CCNNNNNNNGG	2 cut(s)	227, 396
BseMI	GCAATG	1 cut(s)	127
BseMII	CTCAG	2 cut(s)	112, 150
BseRI	GAGGAG	2 cut(s)	268, 397
BseXI	GCAGC	6 cut(s)	19, 22, 81, 252, 288, 322
BseYI	CCCAGC	1 cut(s)	278
BshFI	GGCC	2 cut(s)	128, 134
BshNI	GGYRCC	1 cut(s)	362
BsiSI	CCGG	1 cut(s)	187
BslFI	GGGAC	2 cut(s)	295, 337
BslI	CCNNNNNNNGG	2 cut(s)	227, 396
BsmFI	GGGAC	2 cut(s)	295, 337
BsnI	GGCC	2 cut(s)	128, 134
Bsp119I	TTCGAA	1 cut(s)	167
Bsp143I	GATC	2 cut(s)	153, 205
BspACI	CCGC	1 cut(s)	195
BspANI	GGCC	2 cut(s)	128, 134
BspCNI	CTCAG	2 cut(s)	111, 149
BspLI	GGNNCC	2 cut(s)	6, 364
BspMI	ACCTGC	1 cut(s)	318
BspT104I	TTCGAA	1 cut(s)	167
BspT107I	GGYRCC	1 cut(s)	362
BsrDI	GCAATG	1 cut(s)	127
BssECI	CCNNGG	1 cut(s)	129
BssMI	GATC	2 cut(s)	153, 205
BstBI	TTCGAA	1 cut(s)	167
BstDEI	CTNAG	4 cut(s)	98, 136, 244, 305
BstH2I	RGCGCY	1 cut(s)	164
BstHHI	GCGC	1 cut(s)	163
BstKTI	GATC	2 cut(s)	156, 208
BstMBI	GATC	2 cut(s)	153, 205
BstMWI	GCNNNNNNNGC	7 cut(s)	41, 158, 169, 192, 237, 307, 310
BstNSI	RCATGY	1 cut(s)	71
BstV1I	GCAGC	6 cut(s)	19, 22, 81, 252, 288, 322
BstV2I	GAAGAC	1 cut(s)	75
BsuRI	GGCC	2 cut(s)	128, 134
BtsI	GCAGTG	1 cut(s)	260
BtsIMutI	CAGTG	1 cut(s)	260
BveI	ACCTGC	1 cut(s)	318
CfoI	GCGC	1 cut(s)	163
Cfr13I	GGNCC	2 cut(s)	4, 387
Csp6I	GTAC	1 cut(s)	363
CviAII	CATG	3 cut(s)	68, 323, 415
CviJI	RGCY	7 cut(s)	94, 128, 134, 186, 243, 313, 401
CviKI_1	RGCY	7 cut(s)	94, 128, 134, 186, 243, 313, 401
CviQI	GTAC	1 cut(s)	363
DdeI	CTNAG	4 cut(s)	98, 136, 244, 305
DpnI	GATC	2 cut(s)	155, 207
DpnII	GATC	2 cut(s)	153, 205
DrdI	GACNNNNNNGTC	1 cut(s)	79
DseDI	GACNNNNNNGTC	1 cut(s)	79
Eco147I	AGGCCT	1 cut(s)	134
Eco32I	GATATC	1 cut(s)	340
Eco47I	GGWCC	2 cut(s)	4, 387
Eco57I	CTGAAG	1 cut(s)	69
EcoRV	GATATC	1 cut(s)	340
FaeI	CATG	3 cut(s)	71, 326, 418
FaiI	YATR	4 cut(s)	69, 324, 392, 416
FaqI	GGGAC	2 cut(s)	295, 337
FatI	CATG	3 cut(s)	67, 322, 414
FbaI	TGATCA	1 cut(s)	205
Fnu4HI	GCNGC	6 cut(s)	33, 36, 95, 241, 302, 311
Fsp4HI	GCNGC	6 cut(s)	33, 36, 95, 241, 302, 311
FspBI	CTAG	1 cut(s)	57
GlaI	GCGC	1 cut(s)	162
GluI	GCNGC	6 cut(s)	33, 36, 95, 241, 302, 311
GsaI	CCCAGC	1 cut(s)	282
HaeII	RGCGCY	1 cut(s)	164
HaeIII	GGCC	2 cut(s)	128, 134
HapII	CCGG	1 cut(s)	187
HhaI	GCGC	1 cut(s)	163
Hin1II	CATG	3 cut(s)	71, 326, 418
Hin6I	GCGC	1 cut(s)	161
HinP1I	GCGC	1 cut(s)	161
HinfI	GANTC	2 cut(s)	113, 217
HpaII	CCGG	1 cut(s)	187
HphI	GGTGA	1 cut(s)	209
Hpy188I	TCNGA	2 cut(s)	88, 210
Hpy188III	TCNNGA	2 cut(s)	100, 343
HpyAV	CCTTC	2 cut(s)	142, 389
HpyCH4V	TGCA	1 cut(s)	120
HpyF10VI	GCNNNNNNNGC	7 cut(s)	41, 158, 169, 192, 237, 307, 310
HpyF3I	CTNAG	4 cut(s)	98, 136, 244, 305
Hsp92II	CATG	3 cut(s)	71, 326, 418
HspAI	GCGC	1 cut(s)	161
KpnI	GGTACC	1 cut(s)	366
Ksp22I	TGATCA	1 cut(s)	205
Kzo9I	GATC	2 cut(s)	153, 205
Lsp1109I	GCAGC	6 cut(s)	19, 22, 81, 252, 288, 322
MaeI	CTAG	1 cut(s)	57
MaeIII	GTNAC	2 cut(s)	70, 258
MalI	GATC	2 cut(s)	155, 207
MboI	GATC	2 cut(s)	153, 205
MboII	GAAGA	2 cut(s)	75, 157
MluCI	AATT	1 cut(s)	104
MlyI	GAGTC	1 cut(s)	226
MspI	CCGG	1 cut(s)	187
MwoI	GCNNNNNNNGC	7 cut(s)	41, 158, 169, 192, 237, 307, 310
NdeII	GATC	2 cut(s)	153, 205
NlaIII	CATG	3 cut(s)	71, 326, 418
NlaIV	GGNNCC	2 cut(s)	6, 364
NmeAIII	GCCGAG	1 cut(s)	154
NmuCI	GTSAC	2 cut(s)	70, 258
NspI	RCATGY	1 cut(s)	71
NspV	TTCGAA	1 cut(s)	167
PceI	AGGCCT	1 cut(s)	134
PciI	ACATGT	1 cut(s)	67
PfeI	GAWTC	1 cut(s)	113
PflMI	CCANNNNNTGG	1 cut(s)	227
PkrI	GCNGC	6 cut(s)	34, 37, 96, 242, 303, 312
PleI	GAGTC	1 cut(s)	225
PpsI	GAGTC	1 cut(s)	225
PscI	ACATGT	1 cut(s)	67
PspFI	CCCAGC	1 cut(s)	278
PspN4I	GGNNCC	2 cut(s)	6, 364
PspPI	GGNCC	2 cut(s)	4, 387
RsaI	GTAC	1 cut(s)	364
RsaNI	GTAC	1 cut(s)	363
SatI	GCNGC	6 cut(s)	33, 36, 95, 241, 302, 311
Sau3AI	GATC	2 cut(s)	153, 205
Sau96I	GGNCC	2 cut(s)	4, 387
SchI	GAGTC	1 cut(s)	226
SetI	ASST	7 cut(s)	83, 96, 245, 260, 315, 332, 411
SfuI	TTCGAA	1 cut(s)	167
SinI	GGWCC	2 cut(s)	4, 387
Sse9I	AATT	1 cut(s)	104
SseBI	AGGCCT	1 cut(s)	134
SsiI	CCGC	1 cut(s)	195
SspMI	CTAG	1 cut(s)	57
StuI	AGGCCT	1 cut(s)	134
TaqI	TCGA	1 cut(s)	167
TasI	AATT	1 cut(s)	104
TfiI	GAWTC	1 cut(s)	113
TscAI	CASTG	1 cut(s)	267
TseFI	GTSAC	2 cut(s)	70, 258
TseI	GCWGC	6 cut(s)	32, 35, 94, 240, 301, 310
Tsp45I	GTSAC	2 cut(s)	70, 258
TspDTI	ATGAA	2 cut(s)	311, 403
TspRI	CASTG	1 cut(s)	267
Van91I	CCANNNNNTGG	1 cut(s)	227
VpaK11BI	GGWCC	2 cut(s)	4, 387
XapI	RAATTY	1 cut(s)	104
XceI	RCATGY	1 cut(s)	71
XspI	CTAG	1 cut(s)	57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.