Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000335.1

Orthogroup ID

OG0000300

Physical Location & Seq

Genomic Coordinates Reverse (-)

310703 .. 311442

Gene Structure 740 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000335.1_g000061.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

atggcttccaatcctggtattctgactgaatggccatggacacctcttggaaactttaagtacgtggtggttgctccctgggcgatacacagcatatactcgttcattgttaatgagggagaagacagagatctatcttacttcctcatatttccattcatgttgtttaggatgctgcacaaccagttatggatctctctttctcgatataaaacatccaaaggcagcggccggatcatcgacaagggtctagagttcgaacaagttgacagagaaagaaactgggatgaccaaattatattcaatggactattgttcttcctaggcagcaggcacttgaccggaggtcgaaacctaccgatgtggagaggagatggattcgttataacatttctgcttcatgctggtccagtggagtttctttactactggttgcatagagctctgcaccaccattacctatactctcgctaccattctcaccaccattcctccatcgtcactgagccaattacttgtaagtcgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0008150 GO:0008152 GO:0012505 GO:0016020 GO:0016491 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071704 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko00073 ko01110 map00073 map01110

Pfam Domains

Protein Families

FA_hydroxylase Wax2_C

Protein Analysis

175

Amino Acids

20.69

Weight (kDa)

7.98

Isoelectric Point (pI)

23.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000300)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02190 AT1G02190 AT1G02205 AT1G02205 AT1G02205 AT1G02205 AT1G02205 AT2G37700 AT2G37700 AT2G37700 AT2G37700
fragaria_vesca	FvH4_1g22160 FvH4_7g08560 FvH4_7g08560 FvH4_7g08560 FvH4_7g08570 FvH4_7g08570 FvH4_7g08590 FvH4_7g08590
malus_domestica	MD02G1226900.v1.1 MD07G1083700.v1.1 MD07G1083800.v1.1 MD07G1086200.v1.1 MD07G1086300.v1.1 MD07G1086700.v1.1 MD13G1075600.v1.1
prunus_persica	Prupe.2G112600_v2.0.a1 Prupe.2G112800_v2.0.a1 Prupe.2G113000_v2.0.a1 Prupe.2G113500_v2.0.a1 Prupe.2G113600_v2.0.a1
pyrus_communis	pycom02g19600 pycom02g19610 pycom07g06920 pycom07g06930
rosa_chinensis	RchiOBHm_Chr1g0343261 RchiOBHm_Chr1g0343301 RchiOBHm_Chr1g0343371 RchiOBHm_Chr1g0343431 RchiOBHm_Chr1g0343441 RchiOBHm_Chr1g0343521 RchiOBHm_Chr1g0343691 RchiOBHm_Chr1g0343791
rosa_laevigata	RLG00000028951 RLG00000028953 RLG00000028965 RLG00000028968 RLG00000028969 RLG00000028971 RLG00000028972 RLG00000028974 RLG00000029891
rosa_multiflora	Rmu_sc0000021.1_g000002 Rmu_sc0000335.1_g000046 Rmu_sc0000335.1_g000047 Rmu_sc0000335.1_g000058 Rmu_sc0000335.1_g000061 Rmu_sc0000335.1_g000106 Rmu_sc0000335.1_g000125 Rmu_sc0000544.1_g000010 Rmu_sc0003430.1_g000012 Rmu_sc0005796.1_g000004 Rmu_sc0028268.1_g000001 Rmu_ssc0000259.1_g000038
rosa_roxburghii	Rroxscaffold_2G00110090 Rroxscaffold_4G00310350 Rroxscaffold_4G00310610 Rroxscaffold_4G00310710 Rroxscaffold_4G00310740 Rroxscaffold_4G00310760 Rroxscaffold_4G00321110
rosa_rugosa	Rorug01G0080100 Rorug01G0080200 Rorug01G0166400 Rorug01G0166500 Rorug01G0166500 Rorug01G0166600 Rorug01G0166700 Rorug01G0166800 Rorug01G0168400 Rorug01G0168500 Rorug01G0168800 Rorug03G0241300 Rorug03G0241400 Rorug04G0001200 Rorug06G0031500 Rorug06G0073200 Rorug06G0264000
rosa_samantha	Rh1AG098100 Rh1AG181800 Rh1AG182100 Rh1AG182400 Rh1AG183000 Rh1AG183600 Rh1AG184300 Rh1AG185400 Rh1BG104000 Rh1BG150000 Rh1BG150400 Rh1BG152100 Rh1BG152300 Rh1CG168600 Rh1CG168900 Rh1CG169000 Rh1CG169700 Rh1CG170500 Rh1CG171200 Rh1DG182000 Rh1DG182300 Rh1DG184000 Rh1DG184200
rosa_wichuraiana	Rw0G012940 Rw1G007640 Rw1G007670 Rw1G011320 Rw1G015090 Rw1G015110 Rw1G015130 Rw1G015150 Rw1G015290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	386
AciI	CCGC	1 cut(s)	228
AclWI	GGATC	2 cut(s)	200, 242
AcoI	YGGCCR	2 cut(s)	32, 229
AfaI	GTAC	1 cut(s)	62
AgsI	TTSAA	1 cut(s)	304
AhdI	GACNNNNNGTC	1 cut(s)	345
AjnI	CCWGG	2 cut(s)	13, 77
AluBI	AGCT	1 cut(s)	443
AluI	AGCT	1 cut(s)	443
Alw21I	GWGCWC	1 cut(s)	445
AlwI	GGATC	2 cut(s)	200, 242
AoxI	GGCC	2 cut(s)	32, 229
ApeKI	GCWGC	3 cut(s)	175, 225, 327
AspA2I	CCTAGG	1 cut(s)	322
AspS9I	GGNCC	1 cut(s)	407
AsuHPI	GGTGA	1 cut(s)	473
AsuII	TTCGAA	1 cut(s)	258
AvaII	GGWCC	1 cut(s)	407
AvrII	CCTAGG	1 cut(s)	322
BalI	TGGCCA	1 cut(s)	34
BanII	GRGCYC	1 cut(s)	445
BbsI	GAAGAC	1 cut(s)	129
Bbv12I	GWGCWC	1 cut(s)	445
BbvI	GCAGC	3 cut(s)	162, 237, 339
BccI	CCATC	2 cut(s)	368, 503
BciT130I	CCWGG	2 cut(s)	15, 79
BfaI	CTAG	2 cut(s)	251, 323
BglII	AGATCT	1 cut(s)	130
BisI	GCNGC	4 cut(s)	176, 226, 229, 328
BlnI	CCTAGG	1 cut(s)	322
BlsI	GCNGC	4 cut(s)	177, 227, 230, 329
Bme1390I	CCNGG	2 cut(s)	15, 79
Bme18I	GGWCC	1 cut(s)	407
BmeRI	GACNNNNNGTC	1 cut(s)	345
BmgT120I	GGNCC	1 cut(s)	407
BmrFI	CCNGG	2 cut(s)	15, 79
BmrI	ACTGGG	1 cut(s)	292
BmsI	GCATC	1 cut(s)	162
BmuI	ACTGGG	1 cut(s)	292
BoxI	GACNNNNGTC	1 cut(s)	246
BpiI	GAAGAC	1 cut(s)	129
Bpu14I	TTCGAA	1 cut(s)	258
BsaAI	YACGTR	1 cut(s)	64
BsaJI	CCNNGG	4 cut(s)	35, 77, 78, 322
BsaWI	WCCGGW	1 cut(s)	341
BsaXI	ACNNNNNCTCC	2 cut(s)	476, 506
Bse1I	ACTGG	4 cut(s)	184, 287, 410, 434
BseBI	CCWGG	2 cut(s)	15, 79
BseDI	CCNNGG	4 cut(s)	35, 77, 78, 322
BseGI	GGATG	3 cut(s)	177, 215, 292
BseMII	CTCAG	1 cut(s)	495
BseNI	ACTGG	4 cut(s)	184, 287, 410, 434
BseRI	GAGGAG	1 cut(s)	384
BseX3I	CGGCCG	1 cut(s)	229
BseXI	GCAGC	3 cut(s)	162, 237, 339
BsgI	GTGCAG	2 cut(s)	161, 431
Bsh1285I	CGRYCG	1 cut(s)	232
BshFI	GGCC	2 cut(s)	34, 231
BsiEI	CGRYCG	1 cut(s)	232
BsiHKAI	GWGCWC	1 cut(s)	445
BsiSI	CCGG	2 cut(s)	232, 342
BsnI	GGCC	2 cut(s)	34, 231
Bsp119I	TTCGAA	1 cut(s)	258
Bsp1286I	GDGCHC	1 cut(s)	445
Bsp143I	GATC	3 cut(s)	130, 192, 234
Bsp19I	CCATGG	1 cut(s)	35
BspACI	CCGC	1 cut(s)	228
BspANI	GGCC	2 cut(s)	34, 231
BspCNI	CTCAG	1 cut(s)	496
BspPI	GGATC	2 cut(s)	200, 242
BspT104I	TTCGAA	1 cut(s)	258
BsrI	ACTGG	4 cut(s)	184, 287, 410, 434
BssECI	CCNNGG	4 cut(s)	35, 77, 78, 322
BssMI	GATC	3 cut(s)	130, 192, 234
BssT1I	CCWWGG	2 cut(s)	35, 322
Bst2UI	CCWGG	2 cut(s)	15, 79
BstBAI	YACGTR	1 cut(s)	64
BstBI	TTCGAA	1 cut(s)	258
BstC8I	GCNNGC	1 cut(s)	332
BstDEI	CTNAG	1 cut(s)	504
BstDSI	CCRYGG	1 cut(s)	35
BstF5I	GGATG	3 cut(s)	177, 215, 292
BstKTI	GATC	3 cut(s)	133, 195, 237
BstMBI	GATC	3 cut(s)	130, 192, 234
BstMCI	CGRYCG	1 cut(s)	232
BstMWI	GCNNNNNNNGC	1 cut(s)	80
BstNI	CCWGG	2 cut(s)	15, 79
BstPAI	GACNNNNGTC	1 cut(s)	246
BstSCI	CCNGG	2 cut(s)	13, 77
BstV1I	GCAGC	3 cut(s)	162, 237, 339
BstV2I	GAAGAC	1 cut(s)	129
BstX2I	RGATCY	2 cut(s)	130, 192
BstYI	RGATCY	2 cut(s)	130, 192
BstZI	CGGCCG	1 cut(s)	229
BsuRI	GGCC	2 cut(s)	34, 231
BtgI	CCRYGG	1 cut(s)	35
BtsCI	GGATG	3 cut(s)	177, 215, 292
BtsIMutI	CAGTG	2 cut(s)	417, 501
Cac8I	GCNNGC	1 cut(s)	332
Cfr13I	GGNCC	1 cut(s)	407
Csp6I	GTAC	1 cut(s)	61
CviAII	CATG	3 cut(s)	36, 160, 401
CviJI	RGCY	5 cut(s)	5, 34, 231, 443, 508
CviKI_1	RGCY	5 cut(s)	5, 34, 231, 443, 508
CviQI	GTAC	1 cut(s)	61
DdeI	CTNAG	1 cut(s)	504
DpnI	GATC	3 cut(s)	132, 194, 236
DpnII	GATC	3 cut(s)	130, 192, 234
DriI	GACNNNNNGTC	1 cut(s)	345
EaeI	YGGCCR	2 cut(s)	32, 229
EagI	CGGCCG	1 cut(s)	229
Eam1105I	GACNNNNNGTC	1 cut(s)	345
Ecl136II	GAGCTC	1 cut(s)	443
EclXI	CGGCCG	1 cut(s)	229
Eco130I	CCWWGG	2 cut(s)	35, 322
Eco24I	GRGCYC	1 cut(s)	445
Eco47I	GGWCC	1 cut(s)	407
Eco52I	CGGCCG	1 cut(s)	229
Eco53kI	GAGCTC	1 cut(s)	443
EcoICRI	GAGCTC	1 cut(s)	443
EcoRII	CCWGG	2 cut(s)	13, 77
EcoT14I	CCWWGG	2 cut(s)	35, 322
EcoT38I	GRGCYC	1 cut(s)	445
ErhI	CCWWGG	2 cut(s)	35, 322
FaeI	CATG	3 cut(s)	39, 163, 404
FatI	CATG	3 cut(s)	35, 159, 400
Fnu4HI	GCNGC	4 cut(s)	176, 226, 229, 328
FokI	GGATG	3 cut(s)	184, 202, 299
FriOI	GRGCYC	1 cut(s)	445
Fsp4HI	GCNGC	4 cut(s)	176, 226, 229, 328
FspBI	CTAG	2 cut(s)	251, 323
GluI	GCNGC	4 cut(s)	176, 226, 229, 328
HaeIII	GGCC	2 cut(s)	34, 231
HapII	CCGG	2 cut(s)	232, 342
Hin1II	CATG	3 cut(s)	39, 163, 404
HincII	GTYRAC	1 cut(s)	268
HindII	GTYRAC	1 cut(s)	268
HinfI	GANTC	1 cut(s)	378
HpaII	CCGG	2 cut(s)	232, 342
HphI	GGTGA	1 cut(s)	473
Hpy166II	GTNNAC	1 cut(s)	268
Hpy188I	TCNGA	1 cut(s)	24
Hpy188III	TCNNGA	2 cut(s)	204, 251
Hpy8I	GTNNAC	1 cut(s)	268
HpyCH4IV	ACGT	1 cut(s)	63
HpyCH4V	TGCA	3 cut(s)	178, 436, 448
HpyF10VI	GCNNNNNNNGC	1 cut(s)	80
HpyF3I	CTNAG	1 cut(s)	504
HpySE526I	ACGT	1 cut(s)	63
Hsp92II	CATG	3 cut(s)	39, 163, 404
Kzo9I	GATC	3 cut(s)	130, 192, 234
LmnI	GCTCC	1 cut(s)	79
Lsp1109I	GCAGC	3 cut(s)	162, 237, 339
LweI	GCATC	1 cut(s)	162
MaeI	CTAG	2 cut(s)	251, 323
MaeII	ACGT	1 cut(s)	63
MaeIII	GTNAC	1 cut(s)	499
MalI	GATC	3 cut(s)	132, 194, 236
MboI	GATC	3 cut(s)	130, 192, 234
MboII	GAAGA	2 cut(s)	134, 310
MflI	RGATCY	2 cut(s)	130, 192
MhlI	GDGCHC	1 cut(s)	445
MlsI	TGGCCA	1 cut(s)	34
MluCI	AATT	2 cut(s)	294, 510
MluNI	TGGCCA	1 cut(s)	34
MnlI	CCTC	6 cut(s)	54, 109, 155, 338, 362, 502
Mox20I	TGGCCA	1 cut(s)	34
MscI	TGGCCA	1 cut(s)	34
MseI	TTAA	2 cut(s)	57, 111
Msp20I	TGGCCA	1 cut(s)	34
MspA1I	CMGCKG	1 cut(s)	228
MspI	CCGG	2 cut(s)	232, 342
MspR9I	CCNGG	2 cut(s)	15, 79
MvaI	CCWGG	2 cut(s)	15, 79
MwoI	GCNNNNNNNGC	1 cut(s)	80
NcoI	CCATGG	1 cut(s)	35
NdeII	GATC	3 cut(s)	130, 192, 234
NlaIII	CATG	3 cut(s)	39, 163, 404
NmuCI	GTSAC	1 cut(s)	499
NspV	TTCGAA	1 cut(s)	258
PasI	CCCWGGG	1 cut(s)	78
PfeI	GAWTC	1 cut(s)	378
PkrI	GCNGC	4 cut(s)	177, 227, 230, 329
Ppu21I	YACGTR	1 cut(s)	64
PshAI	GACNNNNGTC	1 cut(s)	246
PsiI	TTATAA	1 cut(s)	386
Psp124BI	GAGCTC	1 cut(s)	445
Psp6I	CCWGG	2 cut(s)	13, 77
PspGI	CCWGG	2 cut(s)	13, 77
PspPI	GGNCC	1 cut(s)	407
PsuI	RGATCY	2 cut(s)	130, 192
RsaI	GTAC	1 cut(s)	62
RsaNI	GTAC	1 cut(s)	61
SacI	GAGCTC	1 cut(s)	445
SaqAI	TTAA	2 cut(s)	57, 111
SatI	GCNGC	4 cut(s)	176, 226, 229, 328
Sau3AI	GATC	3 cut(s)	130, 192, 234
Sau96I	GGNCC	1 cut(s)	407
ScrFI	CCNGG	2 cut(s)	15, 79
SduI	GDGCHC	1 cut(s)	445
SetI	ASST	6 cut(s)	46, 66, 349, 357, 445, 462
SfaNI	GCATC	1 cut(s)	162
SfuI	TTCGAA	1 cut(s)	258
SinI	GGWCC	1 cut(s)	407
Sse9I	AATT	2 cut(s)	294, 510
SsiI	CCGC	1 cut(s)	228
SspMI	CTAG	2 cut(s)	251, 323
SstI	GAGCTC	1 cut(s)	445
StyD4I	CCNGG	2 cut(s)	13, 77
StyI	CCWWGG	2 cut(s)	35, 322
TaiI	ACGT	1 cut(s)	66
TaqI	TCGA	4 cut(s)	205, 240, 258, 349
TasI	AATT	2 cut(s)	294, 510
TauI	GCSGC	1 cut(s)	231
TfiI	GAWTC	1 cut(s)	378
Tru1I	TTAA	2 cut(s)	57, 111
Tru9I	TTAA	2 cut(s)	57, 111
TscAI	CASTG	2 cut(s)	417, 508
TseFI	GTSAC	1 cut(s)	499
TseI	GCWGC	3 cut(s)	175, 225, 327
Tsp45I	GTSAC	1 cut(s)	499
TspDTI	ATGAA	3 cut(s)	94, 148, 389
TspRI	CASTG	2 cut(s)	417, 508
VpaK11BI	GGWCC	1 cut(s)	407
XbaI	TCTAGA	1 cut(s)	250
XmaJI	CCTAGG	1 cut(s)	322
XspI	CTAG	2 cut(s)	251, 323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.