Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0000300

Physical Location & Seq

Genomic Coordinates Reverse (-)

18146274 .. 18147286

Gene Structure 1013 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG104000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGACTGGTACAAATTTTTATTCTTTGCAGAGCGAGGAGCTGAATAGATATGGTGGGTTATATGTCAGCAGGCATCCACAGCTGAAAATTAGGATGGTTGATGGCAGTAGCCTGGTTGTGGCTGTGATACTAAACAGTATTCCAAAAGAGACAACCCAAGTTCTTCTTAGAGGCAAACTCACAAAGGTTGCTGTTGCCATTGCCTTTGGTTTGATCCAGAGGGGTATAAAGGTTGCTACATTACACCAGGACGAGCACTGGGAGCTCACTAAATCATTAAGTGAATCTGAGTGCCGGTTGGTCCTCGAAAAAAACTATGGTCACAAGATTTGGTTAGTGGGAAACGGATTAAGTGAGCAAGAACAGTTGAGTGCACCGAAAGGAACAATATTTGTTCCCTTCTCCCAATTCCCACCAAAAAAGTTGCGAAAAGACTGTTACTATCACTGTACTCCAGCCATGAAGATCCCCAAGTCTCTTGAGAATGTTTACTCTTGTGAGAACTGGTTGCCAAGGAGGGTGATGAGTGCGTGGCGTATAGCTGGGATAGTACATGCATTGGAAGGTTGGAATGACCATGAGTGTGGTTATACCATGTCCGATATTGACAAAGTTTGGCAAGCTACTCTTCGACATGGCTTTCAGCCTCTGATCCCCACCACTACTACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0008150 GO:0008152 GO:0012505 GO:0016020 GO:0016491 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071704 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko00073 ko01110 map00073 map01110

Pfam Domains

Protein Families

FA_hydroxylase Wax2_C

Protein Analysis

223

Amino Acids

25.31

Weight (kDa)

9.06

Isoelectric Point (pI)

40.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CER1-like_C	PF12076	54 - 216	1.4e-73	CER1-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000300)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02190 AT1G02190 AT1G02205 AT1G02205 AT1G02205 AT1G02205 AT1G02205 AT2G37700 AT2G37700 AT2G37700 AT2G37700
fragaria_vesca	FvH4_1g22160 FvH4_7g08560 FvH4_7g08560 FvH4_7g08560 FvH4_7g08570 FvH4_7g08570 FvH4_7g08590 FvH4_7g08590
malus_domestica	MD02G1226900.v1.1 MD07G1083700.v1.1 MD07G1083800.v1.1 MD07G1086200.v1.1 MD07G1086300.v1.1 MD07G1086700.v1.1 MD13G1075600.v1.1
prunus_persica	Prupe.2G112600_v2.0.a1 Prupe.2G112800_v2.0.a1 Prupe.2G113000_v2.0.a1 Prupe.2G113500_v2.0.a1 Prupe.2G113600_v2.0.a1
pyrus_communis	pycom02g19600 pycom02g19610 pycom07g06920 pycom07g06930
rosa_chinensis	RchiOBHm_Chr1g0343261 RchiOBHm_Chr1g0343301 RchiOBHm_Chr1g0343371 RchiOBHm_Chr1g0343431 RchiOBHm_Chr1g0343441 RchiOBHm_Chr1g0343521 RchiOBHm_Chr1g0343691 RchiOBHm_Chr1g0343791
rosa_laevigata	RLG00000028951 RLG00000028953 RLG00000028965 RLG00000028968 RLG00000028969 RLG00000028971 RLG00000028972 RLG00000028974 RLG00000029891
rosa_multiflora	Rmu_sc0000021.1_g000002 Rmu_sc0000335.1_g000046 Rmu_sc0000335.1_g000047 Rmu_sc0000335.1_g000058 Rmu_sc0000335.1_g000061 Rmu_sc0000335.1_g000106 Rmu_sc0000335.1_g000125 Rmu_sc0000544.1_g000010 Rmu_sc0003430.1_g000012 Rmu_sc0005796.1_g000004 Rmu_sc0028268.1_g000001 Rmu_ssc0000259.1_g000038
rosa_roxburghii	Rroxscaffold_2G00110090 Rroxscaffold_4G00310350 Rroxscaffold_4G00310610 Rroxscaffold_4G00310710 Rroxscaffold_4G00310740 Rroxscaffold_4G00310760 Rroxscaffold_4G00321110
rosa_rugosa	Rorug01G0080100 Rorug01G0080200 Rorug01G0166400 Rorug01G0166500 Rorug01G0166500 Rorug01G0166600 Rorug01G0166700 Rorug01G0166800 Rorug01G0168400 Rorug01G0168500 Rorug01G0168800 Rorug03G0241300 Rorug03G0241400 Rorug04G0001200 Rorug06G0031500 Rorug06G0073200 Rorug06G0264000
rosa_samantha	Rh1AG098100 Rh1AG181800 Rh1AG182100 Rh1AG182400 Rh1AG183000 Rh1AG183600 Rh1AG184300 Rh1AG185400 Rh1BG104000 Rh1BG150000 Rh1BG150400 Rh1BG152100 Rh1BG152300 Rh1CG168600 Rh1CG168900 Rh1CG169000 Rh1CG169700 Rh1CG170500 Rh1CG171200 Rh1DG182000 Rh1DG182300 Rh1DG184000 Rh1DG184200
rosa_wichuraiana	Rw0G012940 Rw1G007640 Rw1G007670 Rw1G011320 Rw1G015090 Rw1G015110 Rw1G015130 Rw1G015150 Rw1G015290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	208, 460, 646
AcsI	RAATTY	1 cut(s)	13
AfaI	GTAC	3 cut(s)	10, 451, 552
AfiI	CCNNNNNNNGG	1 cut(s)	118
AjnI	CCWGG	2 cut(s)	111, 246
AluBI	AGCT	5 cut(s)	40, 82, 265, 542, 623
AluI	AGCT	5 cut(s)	40, 82, 265, 542, 623
Alw21I	GWGCWC	3 cut(s)	258, 267, 376
Alw26I	GTCTC	2 cut(s)	143, 480
Alw44I	GTGCAC	1 cut(s)	372
AlwI	GGATC	3 cut(s)	208, 460, 646
AlwNI	CAGNNNCTG	1 cut(s)	649
ApaLI	GTGCAC	1 cut(s)	372
ApoI	RAATTY	1 cut(s)	13
AspS9I	GGNCC	1 cut(s)	301
AsuHPI	GGTGA	1 cut(s)	532
AvaII	GGWCC	1 cut(s)	301
BaeGI	GKGCMC	1 cut(s)	376
BanII	GRGCYC	1 cut(s)	267
Bbv12I	GWGCWC	3 cut(s)	258, 267, 376
BccI	CCATC	2 cut(s)	88, 95
BciT130I	CCWGG	2 cut(s)	113, 248
BcoDI	GTCTC	2 cut(s)	143, 480
Bme1390I	CCNGG	2 cut(s)	113, 248
Bme18I	GGWCC	1 cut(s)	301
BmgT120I	GGNCC	1 cut(s)	301
BmrFI	CCNGG	2 cut(s)	113, 248
BmrI	ACTGGG	1 cut(s)	268
BmsI	GCATC	1 cut(s)	82
BmuI	ACTGGG	1 cut(s)	268
BplI	GAGNNNNNCTC	2 cut(s)	162, 194
BpmI	CTGGAG	1 cut(s)	438
BpuEI	CTTGAG	1 cut(s)	500
BsaJI	CCNNGG	1 cut(s)	512
Bsc4I	CCNNNNNNNGG	1 cut(s)	118
Bse118I	RCCGGY	1 cut(s)	294
Bse1I	ACTGG	3 cut(s)	10, 263, 509
Bse3DI	GCAATG	1 cut(s)	198
BseBI	CCWGG	2 cut(s)	113, 248
BseDI	CCNNGG	1 cut(s)	512
BseGI	GGATG	2 cut(s)	73, 99
BseLI	CCNNNNNNNGG	1 cut(s)	118
BseMI	GCAATG	1 cut(s)	198
BseMII	CTCAG	1 cut(s)	279
BseNI	ACTGG	3 cut(s)	10, 263, 509
BseRI	GAGGAG	1 cut(s)	50
BseSI	GKGCMC	1 cut(s)	376
BseYI	CCCAGC	1 cut(s)	542
BsiHKAI	GWGCWC	3 cut(s)	258, 267, 376
BsiSI	CCGG	1 cut(s)	295
BslI	CCNNNNNNNGG	1 cut(s)	118
BsmAI	GTCTC	2 cut(s)	143, 480
Bsp1286I	GDGCHC	3 cut(s)	258, 267, 376
Bsp143I	GATC	3 cut(s)	213, 465, 651
BspCNI	CTCAG	1 cut(s)	280
BspPI	GGATC	3 cut(s)	208, 460, 646
BsrDI	GCAATG	1 cut(s)	198
BsrFI	RCCGGY	1 cut(s)	294
BsrI	ACTGG	3 cut(s)	10, 263, 509
BssAI	RCCGGY	1 cut(s)	294
BssECI	CCNNGG	1 cut(s)	512
BssMI	GATC	3 cut(s)	213, 465, 651
BssT1I	CCWWGG	1 cut(s)	512
Bst2UI	CCWGG	2 cut(s)	113, 248
Bst4CI	ACNGT	4 cut(s)	137, 366, 437, 449
Bst6I	CTCTTC	1 cut(s)	633
BstC8I	GCNNGC	2 cut(s)	71, 621
BstDEI	CTNAG	2 cut(s)	167, 288
BstF5I	GGATG	2 cut(s)	73, 99
BstKTI	GATC	3 cut(s)	216, 468, 654
BstMAI	GTCTC	2 cut(s)	143, 480
BstMBI	GATC	3 cut(s)	213, 465, 651
BstMWI	GCNNNNNNNGC	2 cut(s)	79, 262
BstNI	CCWGG	2 cut(s)	113, 248
BstNSI	RCATGY	1 cut(s)	557
BstSCI	CCNGG	2 cut(s)	111, 246
BstSLI	GKGCMC	1 cut(s)	376
BstX2I	RGATCY	1 cut(s)	465
BstXI	CCANNNNNNTGG	1 cut(s)	584
BstYI	RGATCY	1 cut(s)	465
BtsCI	GGATG	2 cut(s)	73, 99
BtsIMutI	CAGTG	2 cut(s)	256, 445
Cac8I	GCNNGC	2 cut(s)	71, 621
CaiI	CAGNNNCTG	1 cut(s)	649
Cfr10I	RCCGGY	1 cut(s)	294
Cfr13I	GGNCC	1 cut(s)	301
Csp6I	GTAC	3 cut(s)	9, 450, 551
CviAII	CATG	5 cut(s)	460, 554, 578, 595, 635
CviQI	GTAC	3 cut(s)	9, 450, 551
DdeI	CTNAG	2 cut(s)	167, 288
DpnI	GATC	3 cut(s)	215, 467, 653
DpnII	GATC	3 cut(s)	213, 465, 651
Eam1104I	CTCTTC	1 cut(s)	633
EarI	CTCTTC	1 cut(s)	633
Ecl136II	GAGCTC	1 cut(s)	265
Eco130I	CCWWGG	1 cut(s)	512
Eco24I	GRGCYC	1 cut(s)	267
Eco47I	GGWCC	1 cut(s)	301
Eco53kI	GAGCTC	1 cut(s)	265
EcoICRI	GAGCTC	1 cut(s)	265
EcoRII	CCWGG	2 cut(s)	111, 246
EcoT14I	CCWWGG	1 cut(s)	512
EcoT22I	ATGCAT	1 cut(s)	559
EcoT38I	GRGCYC	1 cut(s)	267
ErhI	CCWWGG	1 cut(s)	512
FaeI	CATG	5 cut(s)	463, 557, 581, 598, 638
FalI	AAGNNNNNCTT	4 cut(s)	150, 182, 612, 644
FatI	CATG	5 cut(s)	459, 553, 577, 594, 634
FokI	GGATG	2 cut(s)	60, 106
FriOI	GRGCYC	1 cut(s)	267
GsaI	CCCAGC	1 cut(s)	546
GsuI	CTGGAG	1 cut(s)	438
HapII	CCGG	1 cut(s)	295
Hin1II	CATG	5 cut(s)	463, 557, 581, 598, 638
HinfI	GANTC	1 cut(s)	284
HpaII	CCGG	1 cut(s)	295
HphI	GGTGA	1 cut(s)	532
Hpy166II	GTNNAC	2 cut(s)	374, 490
Hpy188I	TCNGA	3 cut(s)	289, 601, 651
Hpy188III	TCNNGA	2 cut(s)	217, 479
Hpy8I	GTNNAC	2 cut(s)	374, 490
HpyAV	CCTTC	2 cut(s)	409, 557
HpyCH4III	ACNGT	4 cut(s)	137, 366, 437, 449
HpyCH4V	TGCA	3 cut(s)	28, 374, 557
HpyF10VI	GCNNNNNNNGC	2 cut(s)	79, 262
HpyF3I	CTNAG	2 cut(s)	167, 288
Hsp92II	CATG	5 cut(s)	463, 557, 581, 598, 638
Kzo9I	GATC	3 cut(s)	213, 465, 651
LmnI	GCTCC	2 cut(s)	37, 262
LweI	GCATC	1 cut(s)	82
MaeIII	GTNAC	2 cut(s)	320, 437
MalI	GATC	3 cut(s)	215, 467, 653
MboI	GATC	3 cut(s)	213, 465, 651
MboII	GAAGA	3 cut(s)	155, 475, 620
MflI	RGATCY	1 cut(s)	465
MhlI	GDGCHC	3 cut(s)	258, 267, 376
MluCI	AATT	3 cut(s)	13, 87, 407
MmeI	TCCRAC	1 cut(s)	548
MnlI	CCTC	6 cut(s)	28, 164, 213, 314, 510, 657
Mph1103I	ATGCAT	1 cut(s)	559
MseI	TTAA	3 cut(s)	278, 350, 670
MslI	CAYNNNNRTG	1 cut(s)	582
MspA1I	CMGCKG	1 cut(s)	82
MspI	CCGG	1 cut(s)	295
MspR9I	CCNGG	2 cut(s)	113, 248
MvaI	CCWGG	2 cut(s)	113, 248
MwoI	GCNNNNNNNGC	2 cut(s)	79, 262
NdeII	GATC	3 cut(s)	213, 465, 651
NlaIII	CATG	5 cut(s)	463, 557, 581, 598, 638
NmuCI	GTSAC	1 cut(s)	320
NsiI	ATGCAT	1 cut(s)	559
NspI	RCATGY	1 cut(s)	557
PfeI	GAWTC	1 cut(s)	284
Psp124BI	GAGCTC	1 cut(s)	267
Psp6I	CCWGG	2 cut(s)	111, 246
PspFI	CCCAGC	1 cut(s)	542
PspGI	CCWGG	2 cut(s)	111, 246
PspPI	GGNCC	1 cut(s)	301
PstNI	CAGNNNCTG	1 cut(s)	649
PsuI	RGATCY	1 cut(s)	465
PvuII	CAGCTG	1 cut(s)	82
RsaI	GTAC	3 cut(s)	10, 451, 552
RsaNI	GTAC	3 cut(s)	9, 450, 551
RseI	CAYNNNNRTG	1 cut(s)	582
SacI	GAGCTC	1 cut(s)	267
SaqAI	TTAA	3 cut(s)	278, 350, 670
Sau3AI	GATC	3 cut(s)	213, 465, 651
Sau96I	GGNCC	1 cut(s)	301
ScrFI	CCNGG	2 cut(s)	113, 248
SduI	GDGCHC	3 cut(s)	258, 267, 376
SetI	ASST	8 cut(s)	42, 84, 189, 234, 267, 544, 568, 625
SfaNI	GCATC	1 cut(s)	82
SinI	GGWCC	1 cut(s)	301
SmiMI	CAYNNNNRTG	1 cut(s)	582
SmlI	CTYRAG	1 cut(s)	479
SmoI	CTYRAG	1 cut(s)	479
Sse9I	AATT	3 cut(s)	13, 87, 407
SspI	AATATT	1 cut(s)	390
SstI	GAGCTC	1 cut(s)	267
StyD4I	CCNGG	2 cut(s)	111, 246
StyI	CCWWGG	1 cut(s)	512
TaaI	ACNGT	4 cut(s)	137, 366, 437, 449
TaqI	TCGA	2 cut(s)	306, 631
TasI	AATT	3 cut(s)	13, 87, 407
TatI	WGTACW	2 cut(s)	449, 550
TfiI	GAWTC	1 cut(s)	284
Tru1I	TTAA	3 cut(s)	278, 350, 670
Tru9I	TTAA	3 cut(s)	278, 350, 670
TscAI	CASTG	2 cut(s)	263, 452
TseFI	GTSAC	1 cut(s)	320
Tsp45I	GTSAC	1 cut(s)	320
TspDTI	ATGAA	1 cut(s)	476
TspGWI	ACGGA	1 cut(s)	360
TspRI	CASTG	2 cut(s)	263, 452
VneI	GTGCAC	1 cut(s)	372
VpaK11BI	GGWCC	1 cut(s)	301
XapI	RAATTY	1 cut(s)	13
XceI	RCATGY	1 cut(s)	557
Zsp2I	ATGCAT	1 cut(s)	559

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.